Miyakogusa Predicted Gene
- Lj4g3v0190050.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0190050.2 Non Chatacterized Hit- tr|B8AEM4|B8AEM4_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,61.8,1e-18,SUBFAMILY NOT NAMED,NULL; CCR4-NOT TRANSCRIPTION
COMPLEX RELATED,NULL; seg,NULL; ZF_RING_2,Zinc fing,CUFF.46637.2
(349 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G62910.1 | Symbols: | RING/U-box superfamily protein | chr5:... 166 2e-41
AT3G48070.1 | Symbols: | RING/U-box superfamily protein | chr3:... 159 2e-39
AT3G48070.2 | Symbols: | RING/U-box superfamily protein | chr3:... 159 3e-39
AT1G74870.1 | Symbols: | RING/U-box superfamily protein | chr1:... 76 4e-14
AT3G45630.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 67 2e-11
AT5G60170.2 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 65 7e-11
AT5G60170.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 65 7e-11
AT2G28540.2 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT2G28540.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 64 2e-10
>AT5G62910.1 | Symbols: | RING/U-box superfamily protein |
chr5:25250830-25252015 FORWARD LENGTH=327
Length = 327
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/183 (50%), Positives = 115/183 (62%), Gaps = 13/183 (7%)
Query: 172 AVADALAADDKNQCPCSDLPPSHDE-HVGQTVPPRAAANGSDSNS-------KPASGRLV 223
AVADALAA+++ + L ++ VGQ+ ++ SD++ K R+
Sbjct: 147 AVADALAAEEEIEKKSRPLESVKEQVSVGQSASNVCDSSISDASDVVGVEDPKQECLRVS 206
Query: 224 PWGSGNVRAWRADDAFRPQSLPNLSKQHSMPNPDRYCGGVPWSPNSAPSSCPICFEDLDL 283
+ RAWR DD RPQ LPNL+KQ S P D+ V + PSSCPIC+EDLDL
Sbjct: 207 SRKQTSNRAWRLDDDLRPQGLPNLAKQLSFPELDKRFSSV-----AIPSSCPICYEDLDL 261
Query: 284 TDTSFLPCLCGFRLCLFCHKRILEDDGRCPGCRKPYEREPVETEASVVGGSLTLRLARSC 343
TD++FLPC CGFRLCLFCHK I + DGRCPGCRKPYER V+ E S+ GG LT+RLARS
Sbjct: 262 TDSNFLPCPCGFRLCLFCHKTICDGDGRCPGCRKPYERNMVKAETSIQGGGLTIRLARSS 321
Query: 344 SMI 346
SM
Sbjct: 322 SMF 324
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 18 KNPGKKKRTNRSAKLKQYKIDARREQWLNQGAVKSKGCKD 57
++ GKKKR N+SAK+KQ K+ RREQWL+Q AV +K K+
Sbjct: 16 RDSGKKKRNNKSAKMKQNKLGLRREQWLSQVAVSNKEVKE 55
>AT3G48070.1 | Symbols: | RING/U-box superfamily protein |
chr3:17750878-17751978 FORWARD LENGTH=319
Length = 319
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/119 (63%), Positives = 87/119 (73%), Gaps = 4/119 (3%)
Query: 231 RAWRADDAFRPQSLPNLSKQHSMPNPDRYCGGVPWSPNSAPSSCPICFEDLDLTDTSFLP 290
+AWR DD RPQ LPNL KQ S P + + V PSSCPIC+EDLDLTD++FLP
Sbjct: 205 QAWRPDDKLRPQGLPNLEKQRSFPVMNLHFSSV----TVVPSSCPICYEDLDLTDSNFLP 260
Query: 291 CLCGFRLCLFCHKRILEDDGRCPGCRKPYEREPVETEASVVGGSLTLRLARSCSMIERA 349
C CGFRLCLFCHK I + DGRCPGCRKPYER ++ EASV GG LT+RLARS SM R+
Sbjct: 261 CPCGFRLCLFCHKTICDGDGRCPGCRKPYERNTIKFEASVQGGGLTIRLARSSSMFCRS 319
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 1 MVSDXXXXXXXXXXXNTKNPGKKKRTNRSAKLKQYKIDARREQWLNQGAVKSKGCKDGVD 60
M+SD ++ GKKKRTNRSAKLKQ K+ RREQWL+Q A+ +KG K+ ++
Sbjct: 1 MISDSITNASATSAPTARDFGKKKRTNRSAKLKQSKLGLRREQWLSQVAMINKGDKEEME 60
Query: 61 DD 62
+
Sbjct: 61 SN 62
>AT3G48070.2 | Symbols: | RING/U-box superfamily protein |
chr3:17750878-17752297 FORWARD LENGTH=350
Length = 350
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/119 (63%), Positives = 86/119 (72%), Gaps = 4/119 (3%)
Query: 231 RAWRADDAFRPQSLPNLSKQHSMPNPDRYCGGVPWSPNSAPSSCPICFEDLDLTDTSFLP 290
+AWR DD RPQ LPNL KQ S P + + V PSSCPIC+EDLDLTD++FLP
Sbjct: 205 QAWRPDDKLRPQGLPNLEKQRSFPVMNLHFSSV----TVVPSSCPICYEDLDLTDSNFLP 260
Query: 291 CLCGFRLCLFCHKRILEDDGRCPGCRKPYEREPVETEASVVGGSLTLRLARSCSMIERA 349
C CGFRLCLFCHK I + DGRCPGCRKPYER ++ EASV GG LT+RLARS SM R
Sbjct: 261 CPCGFRLCLFCHKTICDGDGRCPGCRKPYERNTIKFEASVQGGGLTIRLARSSSMFCRV 319
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 1 MVSDXXXXXXXXXXXNTKNPGKKKRTNRSAKLKQYKIDARREQWLNQGAVKSKGCKDGVD 60
M+SD ++ GKKKRTNRSAKLKQ K+ RREQWL+Q A+ +KG K+ ++
Sbjct: 1 MISDSITNASATSAPTARDFGKKKRTNRSAKLKQSKLGLRREQWLSQVAMINKGDKEEME 60
Query: 61 DD 62
+
Sbjct: 61 SN 62
>AT1G74870.1 | Symbols: | RING/U-box superfamily protein |
chr1:28127093-28128275 FORWARD LENGTH=289
Length = 289
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 36/48 (75%)
Query: 274 CPICFEDLDLTDTSFLPCLCGFRLCLFCHKRILEDDGRCPGCRKPYER 321
CPIC E +D TD F PC CGFR+CLFCH +I E++ RCP CRK Y++
Sbjct: 212 CPICSELMDATDLEFEPCTCGFRICLFCHNKISENEARCPACRKDYKK 259
>AT3G45630.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr3:16748751-16753190 REVERSE LENGTH=989
Length = 989
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 6/58 (10%)
Query: 273 SCPICFEDLDLTDTSFLPCLCGFRLCLFCHKRIL------EDDGRCPGCRKPYEREPV 324
+CP+C E++DLTD PC CG+++C++C I+ + +GRCP CR PY++E +
Sbjct: 8 TCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIMDMAEKDQSEGRCPACRTPYDKEKI 65
>AT5G60170.2 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:24228178-24232394 FORWARD LENGTH=987
Length = 987
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 6/58 (10%)
Query: 273 SCPICFEDLDLTDTSFLPCLCGFRLCLFCHKRIL------EDDGRCPGCRKPYEREPV 324
+CP+C E++DLTD PC CG+++C++C I+ + +GRCP CR PY++E +
Sbjct: 8 TCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIVDMAEKDQIEGRCPACRTPYDKEKI 65
>AT5G60170.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:24228178-24232394 FORWARD LENGTH=985
Length = 985
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 6/58 (10%)
Query: 273 SCPICFEDLDLTDTSFLPCLCGFRLCLFCHKRIL------EDDGRCPGCRKPYEREPV 324
+CP+C E++DLTD PC CG+++C++C I+ + +GRCP CR PY++E +
Sbjct: 8 TCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIVDMAEKDQIEGRCPACRTPYDKEKI 65
>AT2G28540.2 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr2:12218652-12223594 FORWARD LENGTH=960
Length = 960
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 6/58 (10%)
Query: 273 SCPICFEDLDLTDTSFLPCLCGFRLCLFCHKRILE------DDGRCPGCRKPYEREPV 324
+CP+C E++DLTD PC CG+++C++C I+E +GRCP CR Y++E +
Sbjct: 8 TCPLCTEEMDLTDQHLKPCKCGYQICVWCWHHIIEMAEKDKTEGRCPACRTRYDKEKI 65
>AT2G28540.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr2:12218652-12223446 FORWARD LENGTH=882
Length = 882
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 6/58 (10%)
Query: 273 SCPICFEDLDLTDTSFLPCLCGFRLCLFCHKRILE------DDGRCPGCRKPYEREPV 324
+CP+C E++DLTD PC CG+++C++C I+E +GRCP CR Y++E +
Sbjct: 8 TCPLCTEEMDLTDQHLKPCKCGYQICVWCWHHIIEMAEKDKTEGRCPACRTRYDKEKI 65