Miyakogusa Predicted Gene
- Lj4g3v0189930.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0189930.1 tr|Q84UE8|Q84UE8_LOTJA Proliferating floral
organs protein OS=Lotus japonicus GN=Pfo PE=2 SV=1,100,0,A Receptor
for Ubiquitination Targets,F-box domain, cyclin-like; FBOX,F-box
domain, cyclin-like; no ,CUFF.46628.1
(449 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G30950.1 | Symbols: UFO | F-box family protein | chr1:1103618... 482 e-136
AT5G15710.1 | Symbols: | Galactose oxidase/kelch repeat superfa... 94 2e-19
AT1G27340.1 | Symbols: | Galactose oxidase/kelch repeat superfa... 87 2e-17
AT3G61590.2 | Symbols: HWS | Galactose oxidase/kelch repeat supe... 62 7e-10
AT3G61590.1 | Symbols: HWS, HS | Galactose oxidase/kelch repeat ... 62 7e-10
AT5G43190.1 | Symbols: | Galactose oxidase/kelch repeat superfa... 53 6e-07
>AT1G30950.1 | Symbols: UFO | F-box family protein |
chr1:11036180-11037508 FORWARD LENGTH=442
Length = 442
Score = 482 bits (1241), Expect = e-136, Method: Compositional matrix adjust.
Identities = 244/402 (60%), Positives = 286/402 (71%), Gaps = 14/402 (3%)
Query: 53 WMNSRIWSKLPQKLLDRVIAFLPTPAFFRARSVCKRWYSLLFSNTFLELYLHLSPRRH-W 111
WM+ RIWSKLP LLDRVIAFLP PAFFR R VCKR+YSLLFSNTFLE YL L P RH
Sbjct: 41 WMDGRIWSKLPPPLLDRVIAFLPPPAFFRTRCVCKRFYSLLFSNTFLETYLQLLPLRHNC 100
Query: 112 FIFFKHKTRXXXXXXXXXXXXXTGSAGTASCEGYLFDPAEMAWYRISFAMIXXXXXXXXX 171
F+FFKHKT T + EG+LFDP E+ WYR+SFA I
Sbjct: 101 FLFFKHKT----LKSYIYKRGGTNDDDSNKAEGFLFDPNEIRWYRLSFAYIPSGFYPSGS 156
Query: 172 XXXLLCWASDEAGPKTMLLSNPILGSXXXXXXXXXXXXXXSIGLTITPTCIDVTVAGDDM 231
L+ W S+EAG KT+LL NP++GS SIGL++TPT IDVTVAGDD+
Sbjct: 157 SGGLVSWVSEEAGLKTILLCNPLVGSVSQLPPISRPRLFPSIGLSVTPTSIDVTVAGDDL 216
Query: 232 ISPYAVKNLTSESFHIDGGGFYSMWGTTSPLPRLCSLESGRMVCAEGKFYCMNCSPFSVL 291
ISPYAVKNL+SESFH+D GGF+S+W TS LPRLCSLESG+MV +GKFYCMN SPFSVL
Sbjct: 217 ISPYAVKNLSSESFHVDAGGFFSLWAMTSSLPRLCSLESGKMVYVQGKFYCMNYSPFSVL 276
Query: 292 AYDIASTTWFKIQAPMRRFLRSPNLVECREKLMLVAAVEKSKLNVPRSLRVWTLQACGTM 351
+Y++ W KIQAPMRRFLRSP+L+E + +L+LVAAVEKSKLNVP+SLR+W+LQ
Sbjct: 277 SYEVTGNRWIKIQAPMRRFLRSPSLLESKGRLILVAAVEKSKLNVPKSLRLWSLQQDNAT 336
Query: 352 WVESERMPQQLYIQFAEIEGGNGFECVGHGEFVVIMIKGTDKALLYDLVRKRWQWIPPCP 411
WVE ERMPQ LY QFA EGG GFECVG+ EFV+I+++GT LL+D+VRK W W+PPCP
Sbjct: 337 WVEIERMPQPLYTQFAAEEGGKGFECVGNQEFVMIVLRGTSLQLLFDIVRKSWLWVPPCP 396
Query: 412 Y---------AGYDGFELHGFAYEPRLATPVTALLDQLALPF 444
Y G DG L GFAY+P L TPV +LLDQL LPF
Sbjct: 397 YSGSGGGSSGGGSDGEVLQGFAYDPVLTTPVVSLLDQLTLPF 438
>AT5G15710.1 | Symbols: | Galactose oxidase/kelch repeat
superfamily protein | chr5:5122791-5124137 FORWARD
LENGTH=448
Length = 448
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/382 (23%), Positives = 146/382 (38%), Gaps = 35/382 (9%)
Query: 54 MNSRIWSKLPQKLLDRVIAFLPTPAFFRARSVCKRWYSLLFSNTFLELYLHLSPRRHWFI 113
M IW+ LP+ LL+ ++A +P FR RSVCK+W +L N+FL+ + ++S +
Sbjct: 99 MEDGIWAMLPEDLLNEILARVPPFMIFRIRSVCKKWNLILQDNSFLKFHSNVSSHGPCLL 158
Query: 114 FFKHKTRXXXXXXXXXXXXXTGSAGTASCEGYLFDPAEMAWYRISFAMIXX-XXXXXXXX 172
F S C +F WY+I F +
Sbjct: 159 TF-----------------WKNSPQIPQCS--VFSLPLKTWYKIPFTFLPPWAFWLVGSS 199
Query: 173 XXLLCWASDEAGPKTMLLSNPILGSXXXXXXXXXXXXXXSIGLTITPTCIDVTVAGDDMI 232
L+C++ + L+ NP++ S I + +A D+
Sbjct: 200 GGLVCFSGLDGLTFRTLVCNPLMQSWRTLPSMHYNQQRQLIMVVDRSDKSFKVIATSDI- 258
Query: 233 SPYAVKNLTSESFHIDGGGFYSMWGTTSPLPRLCSLESGRMVCAEGKFYCMNCSPFSVLA 292
Y K+L +E + W +P + +L S +M + + Y SP ++
Sbjct: 259 --YGDKSLPTEVYDSK----TDKWSLHQIMPAV-NLCSSKMAYCDSRLYLETLSPLGLMM 311
Query: 293 YDIASTTWFKIQAPMRRFLRSPNLVE-CREKLMLVAAVEKSKLNVPRSLRVWTLQACGTM 351
Y + S W I A R L LV +++L LV + + +S+R+W L
Sbjct: 312 YRLDSGQWEHIPAKFPRSLLDGYLVAGTQKRLFLVGRI--GLYSTLQSMRIWELDHTKVS 369
Query: 352 WVESERMPQQLYIQFAEIEGGNGFECVGHGEFVVIMIKGTDKALLYDLVRKRWQWIPPCP 411
WVE RMP + + + FEC G + K LLY++ +K W WI C
Sbjct: 370 WVEISRMPPKYFRALLRLSAER-FECFGQDNLICFTSWNQGKGLLYNVDKKIWSWISGCA 428
Query: 412 YAGYDGFELHGFAYEPRLATPV 433
+ YEPR V
Sbjct: 429 LQSCNS---QVCFYEPRFDASV 447
>AT1G27340.1 | Symbols: | Galactose oxidase/kelch repeat
superfamily protein | chr1:9495741-9497857 FORWARD
LENGTH=467
Length = 467
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/370 (21%), Positives = 141/370 (38%), Gaps = 52/370 (14%)
Query: 54 MNSRIWSKLPQKLLDRVIAFLPTPAFFRARSVCKRWYSLLFSNTFLELYLHLSPRRHWFI 113
M+ IW + PQ L + V++ LP FF+ R+VC++W +L+ S++F + L WF
Sbjct: 112 MDQEIWQEFPQDLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTELPQTIPWFY 171
Query: 114 FFKHKTRXXXXXXXXXXXXXTGSAGTASCEGYLFDPAEMAWYRISFAMIXXXXXX--XXX 171
H+ G ++DP+ W+ +
Sbjct: 172 TITHENVN---------------------SGQVYDPSLKKWHHPIIPALPKKSIVLPMAS 210
Query: 172 XXXLLCWASDEAGPKTMLLSNPILGSXXXXXXXXXXX-XXXSIGLTITPTCIDVTVAGDD 230
L+C+ + G + +SNP+ S ++G+T+ G+
Sbjct: 211 AGGLVCFL--DIGHRNFYVSNPLTKSFRELPARSFKVWSRVAVGMTLN---------GNS 259
Query: 231 MISPYAVKNLTSESFHIDGGGFYSMWGTTSPLPRLCSLE-----SGRMVCAEGKFYCMNC 285
Y V + E + ++W +P L + V Y M
Sbjct: 260 TSHGYKVLWVGCEGEYEVYDSLSNVWTKRGTIPSNIKLPVLLNFKSQPVAIHSTLYFMLT 319
Query: 286 SPFSVLAYDIASTTWFKIQAPMRRFLRSPNLVECREKLMLVAAVEKSKLNVPRSLRVWTL 345
P +L+YD+ S W + P L L C E+LMLV + K N + +W L
Sbjct: 320 DPEGILSYDMVSGKWKQFIIPGPPDLSDHTLAACGERLMLVGLLTK---NAATCVCIWEL 376
Query: 346 QACGTMWVESERMPQQLYIQF--AEIEGGNGFECVGHGEFVVIM---IKGTDKALLYDLV 400
Q +W E +RMP ++F I C+G+ ++++ + ++ + Y+ V
Sbjct: 377 QKMTLLWKEVDRMPNIWCLEFYGKHIR----MNCLGNKGCLILLSLRSRQMNRLITYNAV 432
Query: 401 RKRWQWIPPC 410
+ W +P C
Sbjct: 433 TREWTKVPGC 442
>AT3G61590.2 | Symbols: HWS | Galactose oxidase/kelch repeat
superfamily protein | chr3:22792914-22794149 FORWARD
LENGTH=411
Length = 411
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 307 MRRFLRSP------NLVECREKLMLVAAVEK-SKLNVPRSLRVWTLQACGTMWVESERMP 359
MR F+ P L+ RE+L++V + K + V + + +W L+ G WVE +MP
Sbjct: 281 MRSFIPMPCSLTCGRLMNLRERLVIVGGIGKHDRPEVIKGIGIWVLK--GKEWVEMAKMP 338
Query: 360 QQLYIQFAEIEGGNGFECVGHGEFVVIMIKGTDKALLYDLVRKRWQWIPPCPYAGYDGFE 419
Q+ + F E + F G + V I G+ L +D+ K W+W CP +
Sbjct: 339 QRFFQGFGEFD--EVFASSGTDDLVYIQSYGSPALLTFDMNLKYWRWSQKCPVTKKFPLQ 396
Query: 420 LH-GFAYEPRL 429
L GF +EPRL
Sbjct: 397 LFTGFCFEPRL 407
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 23/136 (16%)
Query: 60 SKLPQKLLDRVIAFLPTPAFFRARSVCKRWYSLLFSNTFLELYLHLS-PRRHWFIFFKHK 118
S LP LL+R+++FLP + FRA +VCKRW ++ S FL + + S +R W+ F
Sbjct: 41 SLLPDDLLERILSFLPIASIFRAGTVCKRWNEIVSSRRFLCNFSNNSVSQRPWYFMF--- 97
Query: 119 TRXXXXXXXXXXXXXTGSAGTASCEGYLFDPAEMAWYRISFAMIXXXXXXXXXXXXLLCW 178
T GY +DP WY I L+C+
Sbjct: 98 ------------------TTTDDPSGYAYDPIIRKWYSFDLPCIETSNWFVASSCGLVCF 139
Query: 179 ASDEAGPKTMLLSNPI 194
++ K + +SNPI
Sbjct: 140 MDNDCRNK-IYVSNPI 154
>AT3G61590.1 | Symbols: HWS, HS | Galactose oxidase/kelch repeat
superfamily protein | chr3:22792914-22794149 FORWARD
LENGTH=411
Length = 411
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 307 MRRFLRSP------NLVECREKLMLVAAVEK-SKLNVPRSLRVWTLQACGTMWVESERMP 359
MR F+ P L+ RE+L++V + K + V + + +W L+ G WVE +MP
Sbjct: 281 MRSFIPMPCSLTCGRLMNLRERLVIVGGIGKHDRPEVIKGIGIWVLK--GKEWVEMAKMP 338
Query: 360 QQLYIQFAEIEGGNGFECVGHGEFVVIMIKGTDKALLYDLVRKRWQWIPPCPYAGYDGFE 419
Q+ + F E + F G + V I G+ L +D+ K W+W CP +
Sbjct: 339 QRFFQGFGEFD--EVFASSGTDDLVYIQSYGSPALLTFDMNLKYWRWSQKCPVTKKFPLQ 396
Query: 420 LH-GFAYEPRL 429
L GF +EPRL
Sbjct: 397 LFTGFCFEPRL 407
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 23/136 (16%)
Query: 60 SKLPQKLLDRVIAFLPTPAFFRARSVCKRWYSLLFSNTFLELYLHLS-PRRHWFIFFKHK 118
S LP LL+R+++FLP + FRA +VCKRW ++ S FL + + S +R W+ F
Sbjct: 41 SLLPDDLLERILSFLPIASIFRAGTVCKRWNEIVSSRRFLCNFSNNSVSQRPWYFMF--- 97
Query: 119 TRXXXXXXXXXXXXXTGSAGTASCEGYLFDPAEMAWYRISFAMIXXXXXXXXXXXXLLCW 178
T GY +DP WY I L+C+
Sbjct: 98 ------------------TTTDDPSGYAYDPIIRKWYSFDLPCIETSNWFVASSCGLVCF 139
Query: 179 ASDEAGPKTMLLSNPI 194
++ K + +SNPI
Sbjct: 140 MDNDCRNK-IYVSNPI 154
>AT5G43190.1 | Symbols: | Galactose oxidase/kelch repeat
superfamily protein | chr5:17340300-17341511 REVERSE
LENGTH=403
Length = 403
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 6/141 (4%)
Query: 277 EGKFYCMNCSPFSVLAYDIASTTWFKIQA----PMRRFLRSPNLVECREKLMLVAAVEKS 332
G Y PF +++ D+ W P + LV EK +L
Sbjct: 240 NGSLYFARSEPFLIVSVDLNDGKWTTATGDGVFPADDEITFARLVSDPEKKILYMVGGIG 299
Query: 333 KLNVPRSLRVWTLQACGTMWVESERMPQQLYIQFAEIEGGN--GFECVGHGEFVVIMIKG 390
+ RS+++W + W+E E +P + +F + N C+ H E + +
Sbjct: 300 SNGICRSIKIWEFKEETESWIEVETLPDIVCRKFTSVCYHNYEHVYCLWHKEMICVCCYN 359
Query: 391 TDKALLYDLVRKRWQWIPPCP 411
+ L + + R+ W W+P CP
Sbjct: 360 WPEILFFHVGRRTWHWVPKCP 380