Miyakogusa Predicted Gene

Lj4g3v0189910.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0189910.1 CUFF.46633.1
         (283 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G31210.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   100   2e-21
AT2G31220.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    77   2e-14
AT1G06170.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    72   6e-13
AT1G06170.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    72   6e-13

>AT2G31210.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:13296655-13298139 FORWARD
           LENGTH=428
          Length = 428

 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 128/314 (40%), Gaps = 98/314 (31%)

Query: 1   MHEQTGCFDPNTMAEG--------------------VSSQKDSFPQTLLDPQPQSLMV-- 38
           M+E++ CFDPN+M +                     + S  +SF   L  P      V  
Sbjct: 1   MYEESSCFDPNSMVDNNGGFCAAETTFTVSHQFQPPLGSTTNSFDDDLKLPTMDEFSVFP 60

Query: 39  ------TENTTNSNNIMDNHLVQEVIDAPLYQQSTWDPNVQEVQDMSYANHPEQQFQHID 92
                    T N N   +NHL+ ++I     Q+S W  +          +HP        
Sbjct: 61  SVISLPNSETQNQNISNNNHLINQMI-----QESNWGVSEDNSNFFMNTSHPNT------ 109

Query: 93  AQNYCQSYTPSILDPSYPSPDLLNFLHLPTCSASSLLTNPPNICISNPTQRTPNFQNSMT 152
                          + P PDLL+ LHLP CS S                          
Sbjct: 110 --------------TTTPIPDLLSLLHLPRCSMS-------------------------- 129

Query: 153 FLGDLPMGPDNTSASSVLYDPLFHLNLPPQPPALRELFQSLPRGYRL-----PTSSRDDS 207
               LP   D  + S   YDPLFHLNLPPQPP +     S   GY L      T+ RD+S
Sbjct: 130 ----LP-SSDIMAGSCFTYDPLFHLNLPPQPPLIPSNDYS---GYLLGIDTNTTTQRDES 181

Query: 208 LFGGGDEMEGDGSQLDMGVLDFNRDTASVGKGREGKGAKPFATEKDRREQLNGKYKILRS 267
             G     E + +Q D G+++F+++    G+G+  +  KPF TE++RR  LN +Y+ L+ 
Sbjct: 182 NVGD----ENNNAQFDSGIIEFSKEIRRKGRGK--RKNKPFTTERERRCHLNERYEALKL 235

Query: 268 LIPNPTKVHRIYAL 281
           LIP+P+K  R   L
Sbjct: 236 LIPSPSKGDRASIL 249


>AT2G31220.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:13303014-13304661 FORWARD
           LENGTH=458
          Length = 458

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 130/304 (42%), Gaps = 70/304 (23%)

Query: 6   GCFDPNTMAEGVSSQKDSFPQTLLDPQPQSLMVTENTTNSNNIMDNHLVQE--------- 56
           GCFDPNT AE   + + SF Q    P P  ++V  +T+NSN  ++   + E         
Sbjct: 13  GCFDPNTPAE--VTVESSFSQAEPPPPPPQVLVAGSTSNSNCSVEVEELSEFHLSPQDCP 70

Query: 57  -VIDAPLYQQSTWDPNVQEVQDMSYANHPEQ----QFQHIDAQNYCQSYTPSILDP-SYP 110
                PL       P      D  + N   Q    Q QH +  N  Q +    L P S  
Sbjct: 71  QASSTPLQFHINPPPPPPPPCDQLHNNLIHQMASHQQQHSNWDNGYQDFVN--LGPNSAT 128

Query: 111 SPDLLNFLHLPTCSASSLLTNPPNICISNPTQRTPNFQNSMTFLGDLPMGPDNTSASSVL 170
           +PDLL+ LHLP CS       PPN    +P+   P   + +           ++SA++V+
Sbjct: 129 TPDLLSLLHLPRCSL------PPN---HHPSSMLPTSFSDIM---------SSSSAAAVM 170

Query: 171 YDPLFHLNLPPQPPALRELFQSLPRGYRLPTSSRDDS-LFGGGDEMEGDGS--------- 220
           YDPLFHLN P QP    +L              R+ S L G  D+++ D +         
Sbjct: 171 YDPLFHLNFPMQPRDQNQL--------------RNGSCLLGVEDQIQMDANGGMNVLYFE 216

Query: 221 -------QLDMGVLDFNRDTASVGKGREGKGAKPFATEKDRREQLNGKYKILRSLIPNPT 273
                    +  +L+FN      G+G       P  TE++RR   N ++  L++LIPNPT
Sbjct: 217 GANNNNGGFENEILEFNNGVTRKGRGSRKSRTSP--TERERRVHFNDRFFDLKNLIPNPT 274

Query: 274 KVHR 277
           K+ R
Sbjct: 275 KIDR 278


>AT1G06170.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:1885146-1886564 REVERSE
           LENGTH=420
          Length = 420

 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 130/302 (43%), Gaps = 85/302 (28%)

Query: 1   MHEQTGCFDPNTMAEGVSSQKDSFPQTLLDPQPQSLMVTENTTNSNNIMDN----HLVQE 56
           M E+ GCFDPN  AE  +    S  +      P ++ V  + +NSN  +++    HL  +
Sbjct: 6   MFEEIGCFDPNAPAEMTAESSFSPSEP-----PPTITVIGSNSNSNCSLEDLSAFHLSPQ 60

Query: 57  VIDAP---------LYQQSTWDPNV---------QEVQDMSYANHPEQQFQHIDAQNYCQ 98
               P         L+  +T  PN          Q +QD SYA    QQ  H D  N  Q
Sbjct: 61  DSSLPASASAYAHQLHINAT--PNCDHQFQSSMHQTLQDPSYA----QQSNHWD--NGYQ 112

Query: 99  SYTPSILDPSYPSPDLLNFLHLPTCSASSLLTNPPNICISNPTQRTPNFQNSMTFLGDLP 158
            +    L P++ +PDLL+ L LP  S       PP    +NP+            + D+ 
Sbjct: 113 DFVN--LGPNHTTPDLLSLLQLPRSSL------PP---FANPS------------IQDII 149

Query: 159 MGPDNTSASSVLYDPLFHLNLPPQPPALRELFQSLPRGYRLPTSSRDDSLFGGGDEMEGD 218
           M    TS+S   YDPLFHLN P QPP                     +  F G D+ + +
Sbjct: 150 M---TTSSSVAAYDPLFHLNFPLQPP---------------------NGSFMGVDQDQTE 185

Query: 219 GSQLDMGVLDFNRDTASVGKGREGKGAKP---FATEKDRREQLNGKYKILRSLIPNPTKV 275
            +Q    + D   +    G  R+G+G+K    F TE++RR     ++  L++LIPNPTK 
Sbjct: 186 TNQGVNLMYDEENNNLDDGLNRKGRGSKKRKIFPTERERRVHFKDRFGDLKNLIPNPTKN 245

Query: 276 HR 277
            R
Sbjct: 246 DR 247


>AT1G06170.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:1885146-1886564 REVERSE
           LENGTH=420
          Length = 420

 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 130/302 (43%), Gaps = 85/302 (28%)

Query: 1   MHEQTGCFDPNTMAEGVSSQKDSFPQTLLDPQPQSLMVTENTTNSNNIMDN----HLVQE 56
           M E+ GCFDPN  AE  +    S  +      P ++ V  + +NSN  +++    HL  +
Sbjct: 6   MFEEIGCFDPNAPAEMTAESSFSPSEP-----PPTITVIGSNSNSNCSLEDLSAFHLSPQ 60

Query: 57  VIDAP---------LYQQSTWDPNV---------QEVQDMSYANHPEQQFQHIDAQNYCQ 98
               P         L+  +T  PN          Q +QD SYA    QQ  H D  N  Q
Sbjct: 61  DSSLPASASAYAHQLHINAT--PNCDHQFQSSMHQTLQDPSYA----QQSNHWD--NGYQ 112

Query: 99  SYTPSILDPSYPSPDLLNFLHLPTCSASSLLTNPPNICISNPTQRTPNFQNSMTFLGDLP 158
            +    L P++ +PDLL+ L LP  S       PP    +NP+            + D+ 
Sbjct: 113 DFVN--LGPNHTTPDLLSLLQLPRSSL------PP---FANPS------------IQDII 149

Query: 159 MGPDNTSASSVLYDPLFHLNLPPQPPALRELFQSLPRGYRLPTSSRDDSLFGGGDEMEGD 218
           M    TS+S   YDPLFHLN P QPP                     +  F G D+ + +
Sbjct: 150 M---TTSSSVAAYDPLFHLNFPLQPP---------------------NGSFMGVDQDQTE 185

Query: 219 GSQLDMGVLDFNRDTASVGKGREGKGAKP---FATEKDRREQLNGKYKILRSLIPNPTKV 275
            +Q    + D   +    G  R+G+G+K    F TE++RR     ++  L++LIPNPTK 
Sbjct: 186 TNQGVNLMYDEENNNLDDGLNRKGRGSKKRKIFPTERERRVHFKDRFGDLKNLIPNPTKN 245

Query: 276 HR 277
            R
Sbjct: 246 DR 247