Miyakogusa Predicted Gene

Lj4g3v0189780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0189780.1 tr|A9RYS0|A9RYS0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_179489,52.63,4e-17,coiled-coil,NULL,CUFF.46619.1
         (81 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20150.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   134   9e-33

>AT4G20150.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: mitochondrion,
          plasma membrane, mitochondrial respiratory chain
          complex I, respiratory chain complex I; EXPRESSED IN:
          24 plant structures; EXPRESSED DURING: 15 growth
          stages; Has 30201 Blast hits to 17322 proteins in 780
          species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
          Fungi - 3422; Plants - 5037; Viruses - 0; Other
          Eukaryotes - 2996 (source: NCBI BLink). |
          chr4:10888529-10889500 REVERSE LENGTH=81
          Length = 81

 Score =  134 bits (338), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 60/81 (74%), Positives = 71/81 (87%)

Query: 1  MVLSATAIGALLGLGTQMYSNALRKLPYMRHPWEHVLGMGIGVVFVNQLLKWEAQVERDL 60
          M +SAT +GALLGLGTQMYSNALRKLPYMRHPWEHV+GMG+G VF NQL+KW+ +++ DL
Sbjct: 1  MPISATMVGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFANQLVKWDVKLKEDL 60

Query: 61 DVMLERAKAANERRYIDADED 81
          DVML +A+AANERRY D D D
Sbjct: 61 DVMLAKARAANERRYFDEDRD 81