Miyakogusa Predicted Gene
- Lj4g3v0189760.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0189760.1 Non Chatacterized Hit- tr|I1GU67|I1GU67_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,39.84,3e-18,seg,NULL; Ring finger,Zinc finger, RING-type;
zf-C3HC4_3,NULL; coiled-coil,NULL; no description,Zinc,CUFF.46617.1
(848 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G34920.1 | Symbols: EDA18 | RING/U-box superfamily protein | ... 148 2e-35
AT1G30860.1 | Symbols: | RING/U-box superfamily protein | chr1:... 121 2e-27
AT5G04460.3 | Symbols: | RING/U-box superfamily protein | chr5:... 115 1e-25
AT5G04460.1 | Symbols: | RING/U-box superfamily protein | chr5:... 115 1e-25
AT2G27950.1 | Symbols: | Ring/U-Box superfamily protein | chr2:... 102 1e-21
AT4G20160.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:... 99 2e-20
AT5G44690.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 62 2e-09
AT5G04460.2 | Symbols: | RING/U-box superfamily protein | chr5:... 56 1e-07
AT2G38195.2 | Symbols: | RING/U-box superfamily protein | chr2:... 54 5e-07
AT2G38195.1 | Symbols: | RING/U-box superfamily protein | chr2:... 54 6e-07
AT2G38220.1 | Symbols: | RING/U-box superfamily protein | chr2:... 54 6e-07
AT3G23280.1 | Symbols: XBAT35 | XB3 ortholog 5 in Arabidopsis th... 50 5e-06
AT3G23280.2 | Symbols: XBAT35 | XB3 ortholog 5 in Arabidopsis th... 50 5e-06
>AT2G34920.1 | Symbols: EDA18 | RING/U-box superfamily protein |
chr2:14728375-14730816 REVERSE LENGTH=652
Length = 652
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 139/482 (28%), Positives = 222/482 (46%), Gaps = 98/482 (20%)
Query: 138 GASSLVQIWEKRLNKSKPCTPAASPGRITTSPDIAGLCNENASCPVEEQCRVSEEGESSD 197
GASSLVQIWE RLN+S A I S + AS S +GES
Sbjct: 85 GASSLVQIWEARLNRSNGGNSAIHSQSIEISSE--------ASVQEIHLLAPSIDGESE- 135
Query: 198 EPQCNEESSPNWESEKTSLNDQSCSLKVQSLDAAERERGRVANIIKRLAVTNQMQSPVSL 257
++ DQ+ ++ +L++ V++II+RL+ ++ +
Sbjct: 136 ------------SENESKSPDQTVEIESGTLNS-------VSDIIRRLSNEQKLTA---- 172
Query: 258 ISNDNDNNEPCSASTPKLKQSEHRVFAQVISSPRIRGRQAFNDLIMQFENERHGELNNLA 317
SN+ + TP L++S F V SPRIRGRQA++DL++ E ERH EL +L
Sbjct: 173 -SNNGGAVDMPIVKTPTLEKSS---FQVVTCSPRIRGRQAYSDLLVHLERERHRELESLL 228
Query: 318 ERGAVTKFTQRGRIQSVLRLRLLQRGVAVFEQSPTKSAASEVNRQQQGSVIVQLRERF-- 375
R AV++F QRGR+QS+LRLR L+RG+A+ ++ + S++NR Q S I+ LRE+
Sbjct: 229 GRNAVSRFPQRGRLQSMLRLRSLKRGLAIQDRH-RGTTKSDLNRFQPSSTILHLREKLRE 287
Query: 376 ---------NTGDEHRTSALAEVSDSRSPSGEIGSNTPQLDNFPTSNQLXXXXXXXXXXX 426
+++ E S+ SG + S P++ +L
Sbjct: 288 KAANAAAEAGLKKGQQSTVETESMQSKETSGILHS--------PSTERLS---------- 329
Query: 427 XXIHCKEPVQNSISQTSADKNKEAHPSSDVTFQRTL----FEAQSDDAKETTEASSSIAD 482
P + +I + KN+ S + ++ + E +SD+ T +
Sbjct: 330 -------PQKRNIEEAILRKNETETKMSYLQLKKAIVAEVLERESDNTSPLTSVTPQEPR 382
Query: 483 SNANEAVVKVEASYQKQHATAEPSYDEIVEEEEASDQN--------------YDEARYDW 528
NE K+E+ + T +E +E S Q+ Y + YDW
Sbjct: 383 ILRNEEAGKLESGTEGTQETP------FLETQEMSFQSGWEEQEEYEDEQSYYGDMSYDW 436
Query: 529 ISQISRPRSYWEELRHAWYQKMLDFGSHNDDRRNLLERRTVSTVLSCDDFRKRMDRMMKS 588
++ISRPR+YWE+LR + Y ++++ S DD LLERRTVS L R+++D+++ S
Sbjct: 437 FTEISRPRTYWEDLRKSRYLEVMNTKSDKDDICRLLERRTVSGFLQ-SGLREKIDKLIMS 495
Query: 589 HM 590
+
Sbjct: 496 RV 497
Score = 109 bits (273), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 71/111 (63%), Gaps = 18/111 (16%)
Query: 728 YDMHGQMVQLFHEMSELRKSIKSCMDMQMQLQKSKYQKVHPVKEEEAKESLNRTPKKGIC 787
+++H + QL EMSELR S+K+C+D+ LQKS VH P K C
Sbjct: 557 HNLHSTL-QL--EMSELRDSVKTCLDVNASLQKS----VHL-----------ENPFKRKC 598
Query: 788 GICYENKVNSVLYRCGHMCACFKCANELQWNRGKCPICKAEIIDVIRVHTN 838
+C E +V ++LYRCGHMC C +CANELQ+N GKCPIC A+I+DV+RV +
Sbjct: 599 CVCNETQVETLLYRCGHMCTCLRCANELQYNGGKCPICHAKILDVVRVFVD 649
>AT1G30860.1 | Symbols: | RING/U-box superfamily protein |
chr1:10986696-10989246 REVERSE LENGTH=730
Length = 730
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 71/118 (60%), Gaps = 15/118 (12%)
Query: 718 NHHSIEMEYIYDMHGQMVQLFHEMSELRKSIKSCMDMQMQLQKSKYQKVHPVKEEEAKES 777
N S EME I M Q+ QL EMS LR S+K+C+D LQ +Q+
Sbjct: 622 NPQSPEMELISGMRSQIQQLQQEMSVLRDSVKTCLDANASLQHKAHQE------------ 669
Query: 778 LNRTPKKGICGICYENKVNSVLYRCGHMCACFKCANELQWNRGKCPICKAEIIDVIRV 835
P K C +C E +V +VLYRCGHMC C KCANEL W+ GKCPIC+A+I+DV+RV
Sbjct: 670 ---NPMKRKCCVCDETQVEAVLYRCGHMCMCLKCANELHWSGGKCPICRAQIVDVVRV 724
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 133/246 (54%), Gaps = 27/246 (10%)
Query: 136 SLGASSLVQIWEKRLNKSKPCTPAASPGRITTSPDIAGLCNENASCPVEEQCRVSEEGES 195
+L ASSLVQIWE RLN+S +S +S + + V + G S
Sbjct: 70 NLVASSLVQIWEARLNRSNGGNSPSSSQSTASSSSRS-----------DSGVSVQDSGLS 118
Query: 196 SDEPQCNEESSPNWESEKTSLNDQSCSLKVQS----LDAAERERGRVANIIKRLAVTNQM 251
E SS + +SE + D++ ++ +S D+ E + GRVA++I+RL+ ++
Sbjct: 119 -------ESSSIDGDSE---IADRTVEIESRSHGLVSDSGESKWGRVADLIRRLSNEDKK 168
Query: 252 QSPVSLISNDNDNNEPCSASTPKL--KQSEHRVFAQVISSPRIRGRQAFNDLIMQFENER 309
++ S E P SE F V SP+IRGRQAF D +MQ E +R
Sbjct: 169 RTAGDNGSGGGGGLEIIRTPRPYCTSSSSEKSNFPVVSFSPKIRGRQAFTDFLMQMERDR 228
Query: 310 HGELNNLAERGAVTKFTQRGRIQSVLRLRLLQRGVAVFEQSPTKSAASEVNRQQQGSVIV 369
H EL++L ER AV++FTQRGR+QS+LRLR L R + + +++ + + + +NR + GS ++
Sbjct: 229 HRELDSLFERNAVSRFTQRGRLQSMLRLRNLNRCLVIQDRNRSNAKTTGLNRIESGSAVL 288
Query: 370 QLRERF 375
LRE+F
Sbjct: 289 HLREKF 294
>AT5G04460.3 | Symbols: | RING/U-box superfamily protein |
chr5:1260009-1263695 FORWARD LENGTH=863
Length = 863
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 80/127 (62%), Gaps = 11/127 (8%)
Query: 722 IEMEYIYDMHGQMVQLFHEMSELRKSIKSCMDMQMQLQKSKYQKVHPVKEE--------- 772
IE E + D+ G + +L MS++++ +++CMDMQ++LQ+S Q+V
Sbjct: 735 IEWEVMNDLRGDVARLQQGMSQMQRMLEACMDMQLELQRSVRQEVSAALNRSAGDQGMSA 794
Query: 773 EAKESLNRTP--KKGICGICYENKVNSVLYRCGHMCACFKCANELQWNRGKCPICKAEII 830
E E +R KG C +C +N ++++LYRCGHMC C KCANEL N GKCP+C+A II
Sbjct: 795 ETSEDGSRWSHVSKGTCCVCCDNHIDALLYRCGHMCTCSKCANELVRNGGKCPLCRAPII 854
Query: 831 DVIRVHT 837
+VIR ++
Sbjct: 855 EVIRAYS 861
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 106/440 (24%), Positives = 164/440 (37%), Gaps = 99/440 (22%)
Query: 68 EKDDSSLSALVSPRHKRIIDRWAAKQAQEAVTTTNCHDE------------VEVFDDFPH 115
E D+ + S+ R +I+ RWAA+QAQE +TT + V + D
Sbjct: 68 EGDNLAESSAARRRQSQILSRWAARQAQEMITTIERRNRESELIALAGLQTVSMLDSSFL 127
Query: 116 RREASVSPPRSDGSTKSEVSSLGASSLVQIWEKRLNKSKPCTPAASPGRITTSPDIAGLC 175
R S SP SE + AS ++Q+W + L A R +
Sbjct: 128 RESQSQSPSSRRQGAASERPNTQASGILQMW-RELEDEHVLNRARERVRERLRQQRSVES 186
Query: 176 NENASCPVEEQCRVSEEGESSDEPQCNEESSPNWESEKTSLND-QSCSLKVQSLDAAERE 234
N N S + + ++SE S + +E +W ++ D + S + QS D + E
Sbjct: 187 NTNLSSSIASESQLSENNGSLRDSSESENDFGSWSHDRNEHGDNNNTSSREQSPDLGDGE 246
Query: 235 RGRVANIIKRLAVTNQMQSPVSLISNDNDNNEP--------------------------C 268
R RV + I R + +++ S + +DN P
Sbjct: 247 RERVRH-IARGWMDSRINDHSSNVRQRDDNRRPEWLGDTERERVRIIREWMQMTSQQRGG 305
Query: 269 SASTPKLKQ-------SEHRVFAQVISSPRIRGRQAFN---------------------- 299
+ +TP+ Q H QV R+R A N
Sbjct: 306 ARATPREDQRSTSEADRNHDAAPQV---DRVRVGLAVNHEEGQPPHVRRDLRRVRGRQAL 362
Query: 300 -DLIMQFENERHGELNNLAERGAVTKFTQRGRIQSVLRLRLLQRGVAVFEQSPTKSAASE 358
DL+M+ E ER EL L E AV+ F R RIQS+LR R L+ + A+ E
Sbjct: 363 LDLLMRAERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERPTVPERTPSMASRE 422
Query: 359 VNRQQQGSVIVQLRERFNTGDEH----------------RTSALA---------EVSDSR 393
+ + ++ + LRE F+ G E+ T+ALA V+D
Sbjct: 423 LLQLRERQTVSGLREGFHNGRENIVHENTSNTDNDNSNTSTNALAIAITAGNSQRVTDES 482
Query: 394 SPSGEIGSNTPQLDNFPTSN 413
S S G+++P L + SN
Sbjct: 483 STSSRQGNDSPILPDNSESN 502
>AT5G04460.1 | Symbols: | RING/U-box superfamily protein |
chr5:1260009-1263695 FORWARD LENGTH=863
Length = 863
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 80/127 (62%), Gaps = 11/127 (8%)
Query: 722 IEMEYIYDMHGQMVQLFHEMSELRKSIKSCMDMQMQLQKSKYQKVHPVKEE--------- 772
IE E + D+ G + +L MS++++ +++CMDMQ++LQ+S Q+V
Sbjct: 735 IEWEVMNDLRGDVARLQQGMSQMQRMLEACMDMQLELQRSVRQEVSAALNRSAGDQGMSA 794
Query: 773 EAKESLNRTP--KKGICGICYENKVNSVLYRCGHMCACFKCANELQWNRGKCPICKAEII 830
E E +R KG C +C +N ++++LYRCGHMC C KCANEL N GKCP+C+A II
Sbjct: 795 ETSEDGSRWSHVSKGTCCVCCDNHIDALLYRCGHMCTCSKCANELVRNGGKCPLCRAPII 854
Query: 831 DVIRVHT 837
+VIR ++
Sbjct: 855 EVIRAYS 861
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 106/440 (24%), Positives = 164/440 (37%), Gaps = 99/440 (22%)
Query: 68 EKDDSSLSALVSPRHKRIIDRWAAKQAQEAVTTTNCHDE------------VEVFDDFPH 115
E D+ + S+ R +I+ RWAA+QAQE +TT + V + D
Sbjct: 68 EGDNLAESSAARRRQSQILSRWAARQAQEMITTIERRNRESELIALAGLQTVSMLDSSFL 127
Query: 116 RREASVSPPRSDGSTKSEVSSLGASSLVQIWEKRLNKSKPCTPAASPGRITTSPDIAGLC 175
R S SP SE + AS ++Q+W + L A R +
Sbjct: 128 RESQSQSPSSRRQGAASERPNTQASGILQMW-RELEDEHVLNRARERVRERLRQQRSVES 186
Query: 176 NENASCPVEEQCRVSEEGESSDEPQCNEESSPNWESEKTSLND-QSCSLKVQSLDAAERE 234
N N S + + ++SE S + +E +W ++ D + S + QS D + E
Sbjct: 187 NTNLSSSIASESQLSENNGSLRDSSESENDFGSWSHDRNEHGDNNNTSSREQSPDLGDGE 246
Query: 235 RGRVANIIKRLAVTNQMQSPVSLISNDNDNNEP--------------------------C 268
R RV + I R + +++ S + +DN P
Sbjct: 247 RERVRH-IARGWMDSRINDHSSNVRQRDDNRRPEWLGDTERERVRIIREWMQMTSQQRGG 305
Query: 269 SASTPKLKQ-------SEHRVFAQVISSPRIRGRQAFN---------------------- 299
+ +TP+ Q H QV R+R A N
Sbjct: 306 ARATPREDQRSTSEADRNHDAAPQV---DRVRVGLAVNHEEGQPPHVRRDLRRVRGRQAL 362
Query: 300 -DLIMQFENERHGELNNLAERGAVTKFTQRGRIQSVLRLRLLQRGVAVFEQSPTKSAASE 358
DL+M+ E ER EL L E AV+ F R RIQS+LR R L+ + A+ E
Sbjct: 363 LDLLMRAERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERPTVPERTPSMASRE 422
Query: 359 VNRQQQGSVIVQLRERFNTGDEH----------------RTSALA---------EVSDSR 393
+ + ++ + LRE F+ G E+ T+ALA V+D
Sbjct: 423 LLQLRERQTVSGLREGFHNGRENIVHENTSNTDNDNSNTSTNALAIAITAGNSQRVTDES 482
Query: 394 SPSGEIGSNTPQLDNFPTSN 413
S S G+++P L + SN
Sbjct: 483 STSSRQGNDSPILPDNSESN 502
>AT2G27950.1 | Symbols: | Ring/U-Box superfamily protein |
chr2:11899422-11903171 REVERSE LENGTH=839
Length = 839
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 80/132 (60%), Gaps = 13/132 (9%)
Query: 719 HHSIEMEY--IYDMHGQMVQLFHEMSELRKSIKSCMDMQMQLQKSKYQKVH--------- 767
H I M++ I D+ M ++ M L++ +++CM+MQ++LQ+S Q+V
Sbjct: 706 HQGIGMDWDSINDLRVDMGRIQQRMDNLQRMLEACMEMQLELQRSIRQEVSAAMHRSTDQ 765
Query: 768 --PVKEEEAKESLNRTPKKGICGICYENKVNSVLYRCGHMCACFKCANELQWNRGKCPIC 825
P K+ + ES +KGIC +C E+ ++S+LYRCGHM C KCA +L GKCP+C
Sbjct: 766 PGPSKDTASYESKWEYVRKGICCVCCESNIDSLLYRCGHMNTCEKCAKKLVEAGGKCPMC 825
Query: 826 KAEIIDVIRVHT 837
+A +I+V+R ++
Sbjct: 826 QAPVIEVVRAYS 837
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 29/185 (15%)
Query: 209 WESEKTSLNDQSCSLKVQS-----LDAAERERGRVANIIKRLAVTNQMQSPVSLISNDND 263
W S T + S S S L E+ER R II+ + N Q P D
Sbjct: 145 WTSSGTGQHTDSASQATNSSRAEWLGETEQERVR---IIREMVQMNSQQRPAL---GDLR 198
Query: 264 NNEPCSASTPKLKQSEHRVFAQVISSP-------------RIRGRQAFNDLIMQFENERH 310
+P + RV ++ +P ++ GRQ + D++ E ER
Sbjct: 199 EEQPIEGANQI-----ERVLDGIVVNPNSIQNEHARRGIRKLCGRQVWVDMLKMAEMERQ 253
Query: 311 GELNNLAERGAVTKFTQRGRIQSVLRLRLLQRGVAVFEQSPTKSAASEVNRQQQGSVIVQ 370
EL L + AV+ F R RIQ++LR R L+ G ++ PT SAA+E+ ++ + +
Sbjct: 254 RELEGLMQHHAVSNFAHRNRIQALLRGRFLRNGDNDDKEKPTSSAATELGFLRERHTVSE 313
Query: 371 LRERF 375
LRE F
Sbjct: 314 LREEF 318
>AT4G20160.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 6
plant structures; EXPRESSED DURING: L mature pollen
stage, M germinated pollen stage, 4 anthesis, petal
differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: RING/U-box superfamily
protein (TAIR:AT1G30860.1); Has 64917 Blast hits to
39974 proteins in 1949 species: Archae - 279; Bacteria -
7425; Metazoa - 26604; Fungi - 5788; Plants - 3193;
Viruses - 275; Other Eukaryotes - 21353 (source: NCBI
BLink). | chr4:10890983-10894971 FORWARD LENGTH=1188
Length = 1188
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 98/159 (61%), Gaps = 12/159 (7%)
Query: 228 LDAAERERG--RVANIIKRLAVTNQMQSPVSLISNDNDNNEPCSASTPKLKQSEHRVFAQ 285
L++ E++R RV +II++L+ ++ I+N NDN + ++ +++ +E R F Q
Sbjct: 206 LESGEKDREGVRVMDIIRKLSNDSET------ITN-NDNGSSGNDNSKEVQTTEARSFPQ 258
Query: 286 VISSPRIRGRQAFNDLIMQFENERHGELNNLAERGAVTKFTQRGRIQSVLRLRLLQRGVA 345
V SPRIRGRQA DL++Q +R +L L ER V+KFT RGRIQS LR+R +R +A
Sbjct: 259 VACSPRIRGRQALADLLVQMTRDREKDLACLRERHCVSKFTNRGRIQSTLRIRCYERCLA 318
Query: 346 V--FEQSPTKSAASEVNRQQQGSVIVQ-LRERFNTGDEH 381
+ +S + SA S+ NR +GS ++ LRE++ E+
Sbjct: 319 IQGRHRSKSTSAGSDSNRSSRGSGVMHLLREKYKANSEN 357
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 5/69 (7%)
Query: 527 DWISQISRPRSYWEELRHAWYQKMLDFGSHNDDRRNLLERRTVSTVLSCDDFRKRMDRMM 586
DWI ISRPRSYWE+LR Y ++L+ S D NL+ERRTVS L+ D R+++D +M
Sbjct: 936 DWIHDISRPRSYWEDLRKERYLEVLNTESEKKDICNLIERRTVSNFLTS-DLRQKIDNLM 994
Query: 587 ----KSHMG 591
+SH+G
Sbjct: 995 ITRVQSHIG 1003
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 686 TWSYRDPDAGDDSDRVAXXXXXXXXXXXXXXANHHSIEMEYIYDMHGQMVQLFHEMSELR 745
+W++RD D D++ N + +M+ I D+ QM QL EM ELR
Sbjct: 1061 SWNFRDQDIDKDNE----PTTSLSLPEPLVPTNQSTQDMQTISDLKEQMEQLQREMLELR 1116
Query: 746 KSIKSCMDMQMQLQKSKYQKV-HPVKEEEAKESLNRTPKKGICGICYENKVNSVLYRCGH 804
++KSC+DMQ+ QKS Q + E + + P K C +C E V+S+LYR +
Sbjct: 1117 NTVKSCIDMQLHFQKSVTQDLSRSGSSAEQRVDPKKDPLKRKCCVCSEMPVDSLLYR--Y 1174
Query: 805 MCACFK 810
C ++
Sbjct: 1175 FCLIYR 1180
>AT5G44690.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G20160.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:18029707-18032293 REVERSE LENGTH=662
Length = 662
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 526 YDWISQISRPRSYWEELRHAWYQKMLDFGSHNDDRRNLLERRTVSTVLSCDDFRKRMDRM 585
YDWIS ISRPRSYWE+L+ ++++ S D NL++ RTVS+ L DFR+++D++
Sbjct: 505 YDWISDISRPRSYWEDLKKQRVLEVMNNISEKGDMWNLIKWRTVSSFLE-GDFREKIDKI 563
Query: 586 MKSHMGTQTDL 596
M S + ++++
Sbjct: 564 MISCVQKRSEI 574
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 7/92 (7%)
Query: 279 EHRVFAQVIS--SPRIRGRQAFNDLIMQFENERHGELNNLAERGAVTKFTQR--GRIQSV 334
E R F ++ S +PRIRGRQA D+ +R EL L R AV+KF+ R GR+Q +
Sbjct: 164 EGRCFLELASCSTPRIRGRQASEDVCKMILRDRENELELLGGRYAVSKFSPRGCGRLQYM 223
Query: 335 LRLRLLQRGVAVFEQSPTKSAASEVNRQQQGS 366
L +R L+R + + E+ +K S+VNR +GS
Sbjct: 224 LMIRSLERCIVIQERYRSK---SDVNRFSRGS 252
>AT5G04460.2 | Symbols: | RING/U-box superfamily protein |
chr5:1260009-1263502 FORWARD LENGTH=825
Length = 825
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 11/91 (12%)
Query: 722 IEMEYIYDMHGQMVQLFHEMSELRKSIKSCMDMQMQLQKSKYQKVHPVKEE--------- 772
IE E + D+ G + +L MS++++ +++CMDMQ++LQ+S Q+V
Sbjct: 735 IEWEVMNDLRGDVARLQQGMSQMQRMLEACMDMQLELQRSVRQEVSAALNRSAGDQGMSA 794
Query: 773 EAKESLNRTP--KKGICGICYENKVNSVLYR 801
E E +R KG C +C +N ++++LYR
Sbjct: 795 ETSEDGSRWSHVSKGTCCVCCDNHIDALLYR 825
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 93/382 (24%), Positives = 144/382 (37%), Gaps = 74/382 (19%)
Query: 68 EKDDSSLSALVSPRHKRIIDRWAAKQAQEAVTTTNCHDE------------VEVFDDFPH 115
E D+ + S+ R +I+ RWAA+QAQE +TT + V + D
Sbjct: 68 EGDNLAESSAARRRQSQILSRWAARQAQEMITTIERRNRESELIALAGLQTVSMLDSSFL 127
Query: 116 RREASVSPPRSDGSTKSEVSSLGASSLVQIWEKRLNKSKPCTPAASPGRITTSPDIAGLC 175
R S SP SE + AS ++Q+W + L A R +
Sbjct: 128 RESQSQSPSSRRQGAASERPNTQASGILQMW-RELEDEHVLNRARERVRERLRQQRSVES 186
Query: 176 NENASCPVEEQCRVSEEGESSDEPQCNEESSPNWESEKTSLND-QSCSLKVQSLDAAERE 234
N N S + + ++SE S + +E +W ++ D + S + QS D + E
Sbjct: 187 NTNLSSSIASESQLSENNGSLRDSSESENDFGSWSHDRNEHGDNNNTSSREQSPDLGDGE 246
Query: 235 RGRVANIIKRLAVTNQMQSPVSLISNDNDNNEP--------------------------C 268
R RV + I R + +++ S + +DN P
Sbjct: 247 RERVRH-IARGWMDSRINDHSSNVRQRDDNRRPEWLGDTERERVRIIREWMQMTSQQRGG 305
Query: 269 SASTPKLKQ-------SEHRVFAQVISSPRIRGRQAFN---------------------- 299
+ +TP+ Q H QV R+R A N
Sbjct: 306 ARATPREDQRSTSEADRNHDAAPQV---DRVRVGLAVNHEEGQPPHVRRDLRRVRGRQAL 362
Query: 300 -DLIMQFENERHGELNNLAERGAVTKFTQRGRIQSVLRLRLLQRGVAVFEQSPTKSAASE 358
DL+M+ E ER EL L E AV+ F R RIQS+LR R L+ + A+ E
Sbjct: 363 LDLLMRAERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERPTVPERTPSMASRE 422
Query: 359 VNRQQQGSVIVQLRERFNTGDE 380
+ + ++ + LRE F+ G E
Sbjct: 423 LLQLRERQTVSGLREGFHNGRE 444
>AT2G38195.2 | Symbols: | RING/U-box superfamily protein |
chr2:16002654-16006261 FORWARD LENGTH=326
Length = 326
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%)
Query: 784 KGICGICYENKVNSVLYRCGHMCACFKCANELQWNRGKCPICKAEIIDVIRVHT 837
K +C IC++ + CGH +C++C +++ +G+CPIC+ +I+ V R++T
Sbjct: 272 KSLCAICFDAPRDCCFLPCGHCVSCYQCGTKIKRTKGRCPICRKKIMHVKRIYT 325
>AT2G38195.1 | Symbols: | RING/U-box superfamily protein |
chr2:16003836-16006261 FORWARD LENGTH=399
Length = 399
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%)
Query: 784 KGICGICYENKVNSVLYRCGHMCACFKCANELQWNRGKCPICKAEIIDVIRVHT 837
K +C IC++ + CGH +C++C +++ +G+CPIC+ +I+ V R++T
Sbjct: 345 KSLCAICFDAPRDCCFLPCGHCVSCYQCGTKIKRTKGRCPICRKKIMHVKRIYT 398
>AT2G38220.1 | Symbols: | RING/U-box superfamily protein |
chr2:16008112-16010538 FORWARD LENGTH=404
Length = 404
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%)
Query: 784 KGICGICYENKVNSVLYRCGHMCACFKCANELQWNRGKCPICKAEIIDVIRVHT 837
K +C IC++ + CGH +C++C +++ +G+CPIC+ ++I V R++T
Sbjct: 350 KSLCAICFDAPRDCCFLPCGHCVSCYQCGTKIKRTKGRCPICRKKMIHVKRIYT 403
>AT3G23280.1 | Symbols: XBAT35 | XB3 ortholog 5 in Arabidopsis
thaliana | chr3:8321588-8324109 FORWARD LENGTH=462
Length = 462
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 771 EEEAKESLNRTPKKGICGICYENKVNSVLYRCGHMCACFKCANELQWNRGKCPICKAEII 830
E E KE N G C IC + +V CGH+ C C E++ CP+C+A+I
Sbjct: 399 EGERKEDGN----TGTCAICLDAPSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKID 454
Query: 831 DVIRVH 836
VI+++
Sbjct: 455 QVIKLY 460
>AT3G23280.2 | Symbols: XBAT35 | XB3 ortholog 5 in Arabidopsis
thaliana | chr3:8321588-8324109 FORWARD LENGTH=438
Length = 438
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 771 EEEAKESLNRTPKKGICGICYENKVNSVLYRCGHMCACFKCANELQWNRGKCPICKAEII 830
E E KE N G C IC + +V CGH+ C C E++ CP+C+A+I
Sbjct: 375 EGERKEDGN----TGTCAICLDAPSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKID 430
Query: 831 DVIRVH 836
VI+++
Sbjct: 431 QVIKLY 436