Miyakogusa Predicted Gene

Lj4g3v0166390.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0166390.1 Non Chatacterized Hit- tr|A5B306|A5B306_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,33.33,5e-17,zinc finger,Zinc finger, CCCH-type; zf-CCCH,Zinc
finger, CCCH-type; CCCH zinc finger,NULL; ZF_C3H1,Z,CUFF.46591.1
         (699 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G02160.1 | Symbols:  | CCCH-type zinc finger family protein |...   320   2e-87

>AT2G02160.1 | Symbols:  | CCCH-type zinc finger family protein |
           chr2:553407-555899 REVERSE LENGTH=669
          Length = 669

 Score =  320 bits (820), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 243/583 (41%), Positives = 318/583 (54%), Gaps = 85/583 (14%)

Query: 22  DEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCYYWLNGNCLNPKCSFRHPP 81
           ++ALK NTDCVYFLASPLTCKKG ECEYRHSEYAR+NPRDCYYWLNGNCLNPKC FRHPP
Sbjct: 26  EDALKWNTDCVYFLASPLTCKKGPECEYRHSEYARMNPRDCYYWLNGNCLNPKCGFRHPP 85

Query: 82  LDGLIXXXXXXXXXXXXXXXXXQIATAAATHAPYNSAKQAVPCIFFQKGLCLKGDRCAFL 141
           L+GL+                 Q   A A H   + AKQ VPC+FFQKG+C+KGD C+FL
Sbjct: 86  LEGLL------GNQGGAPAVSVQPIHATAQHP--SVAKQPVPCLFFQKGMCMKGDMCSFL 137

Query: 142 HGPNPTTSSKVATQGPMASQGFENPSL-KKPFGGIEKYTQERKSSQGNFSSSVGG---FE 197
           H PNP    K   Q P+ ++   +P   KKP   IE  T+E+K    N S  V G     
Sbjct: 138 HTPNPAAYKK---QHPVEAKPATDPQCSKKP---IENNTEEKKLPDVNLSKVVKGHTDIS 191

Query: 198 AKPAQKAETAR--FHLEKHVPPPPAGFDNEASRFKITSSP--PPMTNGPTVARSNRVHQA 253
           A P   +   R    +E ++ P   G++    R      P  P  T G     S ++ Q 
Sbjct: 192 AAPRVASTGLRDSRSVEGYI-PNHVGYEPVVQR----KGPGFPSFTEG---GHSTQLLQK 243

Query: 254 RLPDD-HSFHSGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKGRGQDDRNLDSL 312
              DD +SFH+GKD+D+ LRESSPGFDVLV +E  +S+YYH ED +G+ R Q+  N    
Sbjct: 244 YGSDDNNSFHNGKDADDVLRESSPGFDVLVDNEAGDSEYYHVEDRYGR-RSQERGN---- 298

Query: 313 NEYDIGHSADYSLAADVDRERYRVPHAYDSYDHTQEPYAWEQRRKAPA---HVERRTQRR 369
           +EYD     D+S  AD D+E  R    +DSYD  +E   W  RR +      ++RR    
Sbjct: 299 SEYD----PDFSAIADGDKEALR-EQRFDSYDR-REDRGWGHRRVSSEREDRLDRRVYAE 352

Query: 370 SGSPENVEVSDLRHRLSKRRKVNGLK-SVVTNDY-APGS---HGEEQSHRXXXXXXXXXX 424
               EN+  SDLR+RL+K+RK NG++ SV  +DY AP S    G  +S R          
Sbjct: 353 DERSENILESDLRYRLAKQRKGNGMRLSVGGHDYAAPDSSMDRGYRESRRDTPRENSISS 412

Query: 425 XXXXXXXXXXLPANGADS-HLERDSDRGINRGRLSSGRLHAPHQGRIQDRIRGSSQD--- 480
                       +NG +  H +R S+RG +R  L       P QGR++DRI+G  ++   
Sbjct: 413 SRLQGRIKLRERSNGEEGHHFDRRSERGRDRSEL-------PSQGRLRDRIKGRLEENHS 465

Query: 481 -DERRNF-----RGRELMGNRSDFAAPKSLSELKVGRNTESKEQHSLGKRKSFMD----H 530
            ++ R F     R RE+   R   +APKS  E       ESK + SLGKRKSF +    H
Sbjct: 466 GNQERGFGAPWARRREMEDERK--SAPKSSRE-------ESKPEPSLGKRKSFEEDHHSH 516

Query: 531 QQSDDDIPFEGPKPLSEILKEKRGVGATSHGGKSSDDKNREIA 573
           ++S D   F  P P SEILK K+   A + GG  +++K+  I+
Sbjct: 517 KRSRDS--FAAPLPFSEILKRKK---AAASGGSRNNNKDETIS 554