Miyakogusa Predicted Gene
- Lj4g3v0166130.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0166130.1 tr|D7KBM7|D7KBM7_ARALL Predicted protein
OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_679191
PE,35.67,0.0000000000002,seg,NULL,
NODE_5542_length_945_cov_50.869843.path2.1
(229 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14630.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 92 2e-19
AT2G01990.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 75 5e-14
>AT1G14630.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G01990.1); Has 125 Blast hits to 123 proteins
in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:5019995-5021445 FORWARD
LENGTH=226
Length = 226
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 89/216 (41%), Gaps = 50/216 (23%)
Query: 20 AWDYHNLGVL-----NADRMSLMPEAMEGSVSAAVSFSSPHQET-DFSTGYLEDALVEFG 73
+WD HNLG L N D L+ E+ E F SP E D STGYLEDAL+EF
Sbjct: 10 SWDLHNLGSLFNQNFNLDAWGLIDESPENI------FCSPEMEIGDVSTGYLEDALIEFS 63
Query: 74 ERAKRRRLLLPCIXXXXXXXXXXXXXXLEKGLWDFNPTWHQPVENLYCMDQIERICGFSD 133
R+KRRRL FN +P +L D + G S+
Sbjct: 64 GRSKRRRL-------------------------SFNGAEDKPDNDL---DHSQNHWGLSE 95
Query: 134 EHISTFRSRISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTTEIQQNKRVITR 193
+ T S K + + KRV
Sbjct: 96 NYSCT-----SSQFADESPNSSINICSEEKSSISSRNSFEPSSSTSKKNDYDEKKRV--- 147
Query: 194 SVVYPFALVKPGGREGDVTLNDINERILMPPTRPVR 229
VYPF +VKPGGRE D+TLNDIN+RILMP RPVR
Sbjct: 148 --VYPFGVVKPGGREEDITLNDINKRILMPSARPVR 181
>AT2G01990.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G14630.1); Has 118 Blast hits to 118 proteins
in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:465197-466497 REVERSE
LENGTH=213
Length = 213
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 40/45 (88%), Gaps = 1/45 (2%)
Query: 185 QQNKRVITRSVVYPFALVKPGGREGDVTLNDINERILMPPTRPVR 229
+NKR+IT+ +VYPF LVKPGGRE DVTLNDINERILM P+RP+R
Sbjct: 125 NKNKRLITK-LVYPFGLVKPGGRENDVTLNDINERILMAPSRPIR 168