Miyakogusa Predicted Gene

Lj4g3v0165050.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0165050.1 tr|D7KBM7|D7KBM7_ARALL Predicted protein
OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_679191
PE,35.67,0.0000000000002,seg,NULL,
NODE_5542_length_945_cov_50.869843.path1.1
         (229 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G14630.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    92   2e-19
AT2G01990.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    75   5e-14

>AT1G14630.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT2G01990.1); Has 125 Blast hits to 123 proteins
           in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr1:5019995-5021445 FORWARD
           LENGTH=226
          Length = 226

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 89/216 (41%), Gaps = 50/216 (23%)

Query: 20  AWDYHNLGVL-----NADRMSLMPEAMEGSVSAAVSFSSPHQET-DFSTGYLEDALVEFG 73
           +WD HNLG L     N D   L+ E+ E        F SP  E  D STGYLEDAL+EF 
Sbjct: 10  SWDLHNLGSLFNQNFNLDAWGLIDESPENI------FCSPEMEIGDVSTGYLEDALIEFS 63

Query: 74  ERAKRRRLLLPCIXXXXXXXXXXXXXXLEKGLWDFNPTWHQPVENLYCMDQIERICGFSD 133
            R+KRRRL                          FN    +P  +L   D  +   G S+
Sbjct: 64  GRSKRRRL-------------------------SFNGAEDKPDNDL---DHSQNHWGLSE 95

Query: 134 EHISTFRSRISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTTEIQQNKRVITR 193
            +  T     S                                   K  +  + KRV   
Sbjct: 96  NYSCT-----SSQFADESPNSSINICSEEKSSISSRNSFEPSSSTSKKNDYDEKKRV--- 147

Query: 194 SVVYPFALVKPGGREGDVTLNDINERILMPPTRPVR 229
             VYPF +VKPGGRE D+TLNDIN+RILMP  RPVR
Sbjct: 148 --VYPFGVVKPGGREEDITLNDINKRILMPSARPVR 181


>AT2G01990.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G14630.1); Has 118 Blast hits to 118 proteins
           in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr2:465197-466497 REVERSE
           LENGTH=213
          Length = 213

 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/45 (75%), Positives = 40/45 (88%), Gaps = 1/45 (2%)

Query: 185 QQNKRVITRSVVYPFALVKPGGREGDVTLNDINERILMPPTRPVR 229
            +NKR+IT+ +VYPF LVKPGGRE DVTLNDINERILM P+RP+R
Sbjct: 125 NKNKRLITK-LVYPFGLVKPGGRENDVTLNDINERILMAPSRPIR 168