Miyakogusa Predicted Gene

Lj4g3v0153890.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0153890.1 Non Chatacterized Hit- tr|K4DB49|K4DB49_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,40.26,2e-18,seg,NULL,CUFF.46570.1
         (466 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21895.1 | Symbols:  | DNA binding | chr4:11613523-11614242 R...    96   7e-20
AT5G52890.2 | Symbols:  | AT hook motif-containing protein | chr...    91   2e-18
AT5G52890.1 | Symbols:  | AT hook motif-containing protein | chr...    91   2e-18
AT5G54930.2 | Symbols:  | AT hook motif-containing protein | chr...    86   5e-17
AT5G54930.1 | Symbols:  | AT hook motif-containing protein | chr...    86   5e-17

>AT4G21895.1 | Symbols:  | DNA binding | chr4:11613523-11614242
           REVERSE LENGTH=239
          Length = 239

 Score = 95.5 bits (236), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 77/152 (50%), Gaps = 51/152 (33%)

Query: 8   PGSSSGAPLKRKRGRPRKEQSVVQGQNVPPMQRTNNVLSSNQTMGTVPAMPRPDSGLLSS 67
           P SS+    KRKRGRPRK+++                           + P+PD  L   
Sbjct: 5   PPSSNDGLAKRKRGRPRKDEN---------------------------STPKPDMNL--- 34

Query: 68  NQTMGTTTNDCDDEMVGNVVTGVVEAAFNAGYLINVKVEGSDTLLRGLVFIPGKVSPVTA 127
                          VG VVTGV+E +F+AGYL+NVKV+ SDT LRGLVFI G+V+P+T 
Sbjct: 35  ---------------VGKVVTGVIEGSFDAGYLLNVKVKDSDTQLRGLVFIRGRVTPITP 79

Query: 128 ENDVAPHINMIKRKELPVPTLNPQTQVQGSFP 159
           ENDVAP + M  R+++         Q   SFP
Sbjct: 80  ENDVAPLVKMYGREDI------KNNQTDHSFP 105


>AT5G52890.2 | Symbols:  | AT hook motif-containing protein |
           chr5:21445040-21446197 REVERSE LENGTH=385
          Length = 385

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 84/173 (48%), Gaps = 42/173 (24%)

Query: 1   MNQQNPGPGSSSGAPLKRKRGRPRKEQSVVQGQNVPPMQRTNNVLSSNQTMGTVPAMPRP 60
           M+Q N G  SSS    KRKRGRPR+++S  Q    PP+                      
Sbjct: 9   MDQLNQG--SSSSLTNKRKRGRPRRDESQTQQPVNPPV---------------------- 44

Query: 61  DSGLLSSNQTMGTTTNDCDDEMVGNVVTGVVEAAFNAGYLINVKVEGSDTLLRGLVFIPG 120
                             D+ ++G VV+GVVE +F AGY +NVKV  ++  L+G+VF+P 
Sbjct: 45  ------------------DENLIGRVVSGVVEGSFEAGYFLNVKVADTEKQLKGVVFLPQ 86

Query: 121 KVSPVTAENDVAPHINMIKRKELPVPTLNPQTQVQGSFPAPVQCSKQSSQPET 173
           KV+P+T   D+ P   M  R ++P+P+   QT +Q    A  Q     S+P+T
Sbjct: 87  KVTPLTPATDLFPQAKMYARNDIPIPSSYQQTPLQEKKNAGNQTDDIGSEPQT 139


>AT5G52890.1 | Symbols:  | AT hook motif-containing protein |
           chr5:21445040-21446197 REVERSE LENGTH=357
          Length = 357

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 84/173 (48%), Gaps = 42/173 (24%)

Query: 1   MNQQNPGPGSSSGAPLKRKRGRPRKEQSVVQGQNVPPMQRTNNVLSSNQTMGTVPAMPRP 60
           M+Q N G  SSS    KRKRGRPR+++S  Q    PP+                      
Sbjct: 9   MDQLNQG--SSSSLTNKRKRGRPRRDESQTQQPVNPPV---------------------- 44

Query: 61  DSGLLSSNQTMGTTTNDCDDEMVGNVVTGVVEAAFNAGYLINVKVEGSDTLLRGLVFIPG 120
                             D+ ++G VV+GVVE +F AGY +NVKV  ++  L+G+VF+P 
Sbjct: 45  ------------------DENLIGRVVSGVVEGSFEAGYFLNVKVADTEKQLKGVVFLPQ 86

Query: 121 KVSPVTAENDVAPHINMIKRKELPVPTLNPQTQVQGSFPAPVQCSKQSSQPET 173
           KV+P+T   D+ P   M  R ++P+P+   QT +Q    A  Q     S+P+T
Sbjct: 87  KVTPLTPATDLFPQAKMYARNDIPIPSSYQQTPLQEKKNAGNQTDDIGSEPQT 139


>AT5G54930.2 | Symbols:  | AT hook motif-containing protein |
           chr5:22305897-22306839 REVERSE LENGTH=283
          Length = 283

 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 71/124 (57%), Gaps = 24/124 (19%)

Query: 17  KRKRGRPRKEQSVVQGQNVPPMQRTNNVLSSNQTMGTVPAMPRPDSGLLSSNQTMGTTTN 76
           KRKRGRPRK+  +                S+  ++G  P+         S +Q      N
Sbjct: 20  KRKRGRPRKQLKLE---------------SNEHSLGHSPS--------FSRSQQQSRQRN 56

Query: 77  DCDDEMVGNVVTGVVEAAFNAGYLINVKVEGSDTLLRGLVFIPGKVSPVTAENDVAPHIN 136
           D D+ MVG  ++GV+EA F AG+L++VKV  SD++LRG+VF PG   PV+ +NDVAP + 
Sbjct: 57  D-DEAMVGQPISGVIEATFEAGFLLSVKVGNSDSMLRGVVFKPGHCDPVSVDNDVAPDVP 115

Query: 137 MIKR 140
           MI+R
Sbjct: 116 MIRR 119


>AT5G54930.1 | Symbols:  | AT hook motif-containing protein |
           chr5:22305897-22306839 REVERSE LENGTH=286
          Length = 286

 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 71/124 (57%), Gaps = 24/124 (19%)

Query: 17  KRKRGRPRKEQSVVQGQNVPPMQRTNNVLSSNQTMGTVPAMPRPDSGLLSSNQTMGTTTN 76
           KRKRGRPRK+  +                S+  ++G  P+         S +Q      N
Sbjct: 20  KRKRGRPRKQLKLE---------------SNEHSLGHSPS--------FSRSQQQSRQRN 56

Query: 77  DCDDEMVGNVVTGVVEAAFNAGYLINVKVEGSDTLLRGLVFIPGKVSPVTAENDVAPHIN 136
           D D+ MVG  ++GV+EA F AG+L++VKV  SD++LRG+VF PG   PV+ +NDVAP + 
Sbjct: 57  D-DEAMVGQPISGVIEATFEAGFLLSVKVGNSDSMLRGVVFKPGHCDPVSVDNDVAPDVP 115

Query: 137 MIKR 140
           MI+R
Sbjct: 116 MIRR 119