Miyakogusa Predicted Gene

Lj4g3v0151620.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0151620.1 tr|Q5QNL2|Q5QNL2_ORYSJ DNA polymerase delta p66
subunit-like OS=Oryza sativa subsp. japonica
GN=P045,38.14,7e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.46540.1
         (283 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78650.1 | Symbols: POLD3 | DNA-directed DNA polymerases | ch...    82   3e-16

>AT1G78650.1 | Symbols: POLD3 | DNA-directed DNA polymerases |
           chr1:29582987-29585508 FORWARD LENGTH=509
          Length = 509

 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 112/241 (46%), Gaps = 19/241 (7%)

Query: 47  AEDYANKTTPDKGRALPLPTDKNIVQSNKNGPVTGGSLASFWGRASAKSKPCSPPAENSS 106
           A++ + K++ DK +A  +P +K   Q  K+   TGG L + WGR   K++  SP  +  +
Sbjct: 210 AKNQSAKSSLDKEKAFHVPANKKNGQGEKSVTGTGGLLKNMWGRVPVKTEDDSPTVDVKN 269

Query: 107 TVSNPSEATEVAQTCAHEV--RXXXXXXXXXXXIAXXXXXXXXXXVVLDFSDED-EDVIS 163
            ++N SE     Q  +H+   +                       V+ DFSD++ EDVIS
Sbjct: 270 HITNHSEP----QKPSHDADKKGGSDDETRDANFMRAPKDNRKRKVIFDFSDDEYEDVIS 325

Query: 164 LASPDFPYXXXXXXXXXXXXXXX-EKPTLNFDLEIENKSRVKEERVTQQKAHQPHRGDSS 222
           LASP  P                 EKP  +   EI+++         + +A +  R +++
Sbjct: 326 LASPSSPKVNSRPDVELSSEDSGPEKPDADVSPEIKSE---------EPEASKEDRQNTA 376

Query: 223 VISKCTNTGRXXXXXXXXXXXEICVNKDSIKNATPGSPKRKKVMKTRIDERGREVTEVVW 282
            +   T T             E+  +K     A P SPKRKKV+K+RID+RGREVTEVVW
Sbjct: 377 SVDAST-TLSTEKIQAIGSEAEVNPSKRRT-TAVPSSPKRKKVLKSRIDDRGREVTEVVW 434

Query: 283 E 283
           E
Sbjct: 435 E 435