Miyakogusa Predicted Gene

Lj4g3v0151580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0151580.1 Non Chatacterized Hit- tr|J3MR14|J3MR14_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB08G1,30.54,0.0000001,CBM_25,Carbohydrate binding module family
25; Carbohydrate binding domain,Carbohydrate binding
modul,CUFF.46536.1
         (219 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11720.2 | Symbols: SS3 | starch synthase 3 | chr1:3951597-39...   199   2e-51
AT1G11720.1 | Symbols: ATSS3, SS3 | starch synthase 3 | chr1:395...   199   2e-51

>AT1G11720.2 | Symbols: SS3 | starch synthase 3 |
           chr1:3951597-3956840 FORWARD LENGTH=1094
          Length = 1094

 Score =  199 bits (505), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 127/174 (72%), Gaps = 6/174 (3%)

Query: 48  DRSLARVETERKRDKLQQLLNKAVKFMDNVWYIEHGEFNGKDSVRLYYNRSSGPLSNSKE 107
           DR+ A+ ET+++R+ LQ  + KAV   +NVWYIE  +F  +D+V+LYYN+ SGPL+NSKE
Sbjct: 340 DRAQAKAETQKRRELLQPAIKKAVVSAENVWYIEPSDFKAEDTVKLYYNKRSGPLTNSKE 399

Query: 108 VWIHGGHNKWKDGLTIVERLVKSGSKDAD-----WWHADVVLPYQALVLDWVFADGPPHN 162
           +W+HGG N W DGL+IV +LV +  KD D     WW A+VV+P  ALV+DWVFADGPP  
Sbjct: 400 LWLHGGFNNWVDGLSIVVKLVNAELKDVDPKSGNWWFAEVVVPGGALVIDWVFADGPPKG 459

Query: 163 ASVYDNNHSEDFHAIVTKATDKE-YWTREEQLIYRKLQEHRRLREKAMREKVVK 215
           A +YDNN  +DFHA+V +   +E YW  EE +I+RKLQE RRL+E+ MR K+ K
Sbjct: 460 AFLYDNNGYQDFHALVPQKLPEELYWLEEENMIFRKLQEDRRLKEEVMRAKMEK 513



 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 9/125 (7%)

Query: 89  DSVRLYYNRSSGPLSNSKEVWIHGGHNKWKDGLTIVERLVKSGSKDADWWHADVVLPYQA 148
           + + ++ NR+   L+N  +V I G  N+W+   +   RL K+   + DW    + +P +A
Sbjct: 206 EDIEVFLNRNLSTLNNEPDVLIMGAFNEWR-WKSFTRRLEKTWIHE-DWLSCLLHIPKEA 263

Query: 149 LVLDWVFADGPPHNASVYDNNHSEDFHAIVTKATDKEYWTREEQLIYRKLQEHRRL-REK 207
             +D+VF +G     SVYDNN S+DF   +    DK  +  E  L+  KL+E  +L +E+
Sbjct: 264 YKMDFVFFNG----QSVYDNNDSKDFCVEIKGGMDKVDF--ENFLLEEKLREQEKLAKEE 317

Query: 208 AMREK 212
           A RE+
Sbjct: 318 AERER 322



 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 7/135 (5%)

Query: 52  ARVETERKRDKLQQLLNKAVKFMDNVWYIEHGEFNGKDSVRLYYNRSSGPLSNSKEVWIH 111
           AR++ E K   L++ L        +V Y E  E    + V + YN ++  L+   EVW  
Sbjct: 515 ARLKAETKERTLKKFLLS----QKDVVYTEPLEIQAGNPVTVLYNPANTVLNGKPEVWFR 570

Query: 112 GGHNKWKDGL-TIVERLVKSGSKDADWWHADVVLPYQALVLDWVFADGPPHNASVYDNNH 170
           G  N+W   L  +  + +++   ++        +P  A ++D+VF++    +  ++DN +
Sbjct: 571 GSFNRWTHRLGPLPPQKMEATDDESSHVKTTAKVPLDAYMMDFVFSE--KEDGGIFDNKN 628

Query: 171 SEDFHAIVTKATDKE 185
             D+H  V     KE
Sbjct: 629 GLDYHLPVVGGISKE 643


>AT1G11720.1 | Symbols: ATSS3, SS3 | starch synthase 3 |
           chr1:3952460-3956840 FORWARD LENGTH=1042
          Length = 1042

 Score =  199 bits (505), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 127/174 (72%), Gaps = 6/174 (3%)

Query: 48  DRSLARVETERKRDKLQQLLNKAVKFMDNVWYIEHGEFNGKDSVRLYYNRSSGPLSNSKE 107
           DR+ A+ ET+++R+ LQ  + KAV   +NVWYIE  +F  +D+V+LYYN+ SGPL+NSKE
Sbjct: 288 DRAQAKAETQKRRELLQPAIKKAVVSAENVWYIEPSDFKAEDTVKLYYNKRSGPLTNSKE 347

Query: 108 VWIHGGHNKWKDGLTIVERLVKSGSKDAD-----WWHADVVLPYQALVLDWVFADGPPHN 162
           +W+HGG N W DGL+IV +LV +  KD D     WW A+VV+P  ALV+DWVFADGPP  
Sbjct: 348 LWLHGGFNNWVDGLSIVVKLVNAELKDVDPKSGNWWFAEVVVPGGALVIDWVFADGPPKG 407

Query: 163 ASVYDNNHSEDFHAIVTKATDKE-YWTREEQLIYRKLQEHRRLREKAMREKVVK 215
           A +YDNN  +DFHA+V +   +E YW  EE +I+RKLQE RRL+E+ MR K+ K
Sbjct: 408 AFLYDNNGYQDFHALVPQKLPEELYWLEEENMIFRKLQEDRRLKEEVMRAKMEK 461



 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 9/125 (7%)

Query: 89  DSVRLYYNRSSGPLSNSKEVWIHGGHNKWKDGLTIVERLVKSGSKDADWWHADVVLPYQA 148
           + + ++ NR+   L+N  +V I G  N+W+   +   RL K+   + DW    + +P +A
Sbjct: 154 EDIEVFLNRNLSTLNNEPDVLIMGAFNEWR-WKSFTRRLEKTWIHE-DWLSCLLHIPKEA 211

Query: 149 LVLDWVFADGPPHNASVYDNNHSEDFHAIVTKATDKEYWTREEQLIYRKLQEHRRL-REK 207
             +D+VF +G     SVYDNN S+DF   +    DK  +  E  L+  KL+E  +L +E+
Sbjct: 212 YKMDFVFFNG----QSVYDNNDSKDFCVEIKGGMDKVDF--ENFLLEEKLREQEKLAKEE 265

Query: 208 AMREK 212
           A RE+
Sbjct: 266 AERER 270



 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 7/135 (5%)

Query: 52  ARVETERKRDKLQQLLNKAVKFMDNVWYIEHGEFNGKDSVRLYYNRSSGPLSNSKEVWIH 111
           AR++ E K   L++ L        +V Y E  E    + V + YN ++  L+   EVW  
Sbjct: 463 ARLKAETKERTLKKFLLS----QKDVVYTEPLEIQAGNPVTVLYNPANTVLNGKPEVWFR 518

Query: 112 GGHNKWKDGL-TIVERLVKSGSKDADWWHADVVLPYQALVLDWVFADGPPHNASVYDNNH 170
           G  N+W   L  +  + +++   ++        +P  A ++D+VF++    +  ++DN +
Sbjct: 519 GSFNRWTHRLGPLPPQKMEATDDESSHVKTTAKVPLDAYMMDFVFSE--KEDGGIFDNKN 576

Query: 171 SEDFHAIVTKATDKE 185
             D+H  V     KE
Sbjct: 577 GLDYHLPVVGGISKE 591