Miyakogusa Predicted Gene

Lj4g3v0151520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0151520.1 Non Chatacterized Hit- tr|G7JJ82|G7JJ82_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,68.06,9e-17,seg,NULL,CUFF.46530.1
         (72 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11740.1 | Symbols:  | ankyrin repeat family protein | chr1:3...    53   4e-08
AT1G62045.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    50   3e-07

>AT1G11740.1 | Symbols:  | ankyrin repeat family protein |
           chr1:3963317-3966824 REVERSE LENGTH=644
          Length = 644

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 1/48 (2%)

Query: 1   MATEAPSWADQWGAGGIGAL-EDDNSGSQKDIGKTKNSGAKNGFSKAK 47
           MA+EAPSWADQWG GGIG +  ++ +  +KD+   K+   K G +KAK
Sbjct: 573 MASEAPSWADQWGTGGIGVMAAEETTDGKKDVTGKKSGKTKAGINKAK 620


>AT1G62045.1 | Symbols:  | BEST Arabidopsis thaliana protein match
          is: ankyrin repeat family protein (TAIR:AT1G11740.1);
          Has 26 Blast hits to 26 proteins in 7 species: Archae -
          0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26;
          Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
          | chr1:22934905-22935108 REVERSE LENGTH=67
          Length = 67

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 32/39 (82%), Gaps = 2/39 (5%)

Query: 1  MATEAPSWADQWGAGGIGAL-EDDNSGSQKDIGKTKNSG 38
          MA+EAPSWADQWG GGIG + E+DN+ S+KD G  KNSG
Sbjct: 1  MASEAPSWADQWGTGGIGEMPEEDNTKSKKDAG-GKNSG 38