Miyakogusa Predicted Gene

Lj4g3v0151510.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0151510.1 tr|D7KMI1|D7KMI1_ARALL Ankyrin repeat family
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRA,41.8,1e-16,seg,NULL; GPCR_chapero_1,Ankyrin repeat
domain-containing protein 13,CUFF.46529.1
         (132 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G62050.1 | Symbols:  | Ankyrin repeat family protein | chr1:2...    55   1e-08
AT1G11740.1 | Symbols:  | ankyrin repeat family protein | chr1:3...    55   2e-08

>AT1G62050.1 | Symbols:  | Ankyrin repeat family protein |
           chr1:22936323-22938874 REVERSE LENGTH=624
          Length = 624

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 42/93 (45%), Gaps = 12/93 (12%)

Query: 24  FTKFVELQPVEQFYTPFSSPRHLSSETGRVDEEHKPERHRXXXXXXXVAYKWLRR---NN 80
           FTKFVEL P E FYTP SSPR L S T   +E+H                 WLR      
Sbjct: 516 FTKFVELPPAETFYTPLSSPRFLYSATAG-EEDHSDGEKPDARNSISRPSTWLRLATGKG 574

Query: 81  SMSRAGNKQQQPQCSSMTLDCDTFAIPAGYTWT 113
           S  R   ++QQ          D FAIP GY WT
Sbjct: 575 SHRRVEEEEQQ--------TPDPFAIPIGYKWT 599


>AT1G11740.1 | Symbols:  | ankyrin repeat family protein |
           chr1:3963317-3966824 REVERSE LENGTH=644
          Length = 644

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 24  FTKFVELQPVEQFYTPFSSPRHLSS---ETGRVDEEHKPERHRXXXXXXXVAYKWLRRNN 80
           F+KFV L P+++FYTP SSP+HL +   +   V ++ K +R             WLR N 
Sbjct: 437 FSKFVALPPLDEFYTPLSSPKHLLAAMEDQHDVHDDEKLDRRISSSRPSFSTPSWLRLNI 496

Query: 81  SMSRAGNKQQQPQCSSMTLDCDTFAIPAGYTWT 113
           +   A  K  + +        D F IP GY WT
Sbjct: 497 N---ATGKSSRRRLVDEEQVVDPFTIPTGYKWT 526