Miyakogusa Predicted Gene
- Lj4g3v0134610.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0134610.3 Non Chatacterized Hit- tr|I1KNG6|I1KNG6_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,88.09,0,leuS_bact:
leucine--tRNA ligase,Leucine-tRNA ligase, bacterial/mitochondrial;
Nucleotidylyl transfer,CUFF.46506.3
(873 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G04350.1 | Symbols: EMB2369 | tRNA synthetase class I (I, L, ... 1360 0.0
AT1G14610.1 | Symbols: TWN2, VALRS | valyl-tRNA synthetase / val... 104 3e-22
AT5G49030.3 | Symbols: OVA2 | tRNA synthetase class I (I, L, M a... 81 2e-15
AT5G49030.1 | Symbols: OVA2 | tRNA synthetase class I (I, L, M a... 81 3e-15
AT5G49030.2 | Symbols: OVA2 | tRNA synthetase class I (I, L, M a... 80 5e-15
AT5G16715.1 | Symbols: EMB2247 | ATP binding;valine-tRNA ligases... 67 4e-11
AT4G10320.1 | Symbols: | tRNA synthetase class I (I, L, M and V... 59 1e-08
AT1G09620.1 | Symbols: | ATP binding;leucine-tRNA ligases;amino... 57 4e-08
>AT4G04350.1 | Symbols: EMB2369 | tRNA synthetase class I (I, L, M
and V) family protein | chr4:2128129-2133030 FORWARD
LENGTH=973
Length = 973
Score = 1360 bits (3521), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 629/810 (77%), Positives = 718/810 (88%), Gaps = 2/810 (0%)
Query: 59 NEPEQQKLPVTRAYPFNEIEPKWQRFWDQHRTFRTPDDDELDMSKPKFYVLDMFPYPSGA 118
+E + + R YPF+EIEPKWQR+W+ +R FRTPDD +D SKPKFYVLDMFPYPSGA
Sbjct: 72 SETATTSIELKRVYPFHEIEPKWQRYWEDNRIFRTPDD--VDTSKPKFYVLDMFPYPSGA 129
Query: 119 GLHVGHPLGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKLTTVRNIN 178
GLHVGHPLGYTATDILAR +RMQGYNVLHPMGWDAFGLPAEQYAIETGTHPK TT++NI+
Sbjct: 130 GLHVGHPLGYTATDILARLRRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKTTTLKNID 189
Query: 179 RFRSQLKSLGFSYDWDREISTIEPDYYKWTQWIFLQLFKRGLAYQAEVPVNWCPALGTVL 238
RFR QLKSLGFSYDWDRE+ST EPDYYKWTQWIFLQL+K+GLAYQAEVPVNWCPALGTVL
Sbjct: 190 RFRLQLKSLGFSYDWDRELSTTEPDYYKWTQWIFLQLYKKGLAYQAEVPVNWCPALGTVL 249
Query: 239 ANEEVIDGVSERGGHPVVRKPMRQWMLKITAYADRLFEDLDDLDWPESVKEMQRNWIGRS 298
ANEEV+DGVSERGGHPV+RKPMRQWMLKITAYADRL EDLD+L+WPES+KEMQRNWIGRS
Sbjct: 250 ANEEVVDGVSERGGHPVIRKPMRQWMLKITAYADRLLEDLDELEWPESIKEMQRNWIGRS 309
Query: 299 EGAEMEFCILDNDGKERDINIIVYTTRPDTIFGATYLVVAPEHPLLLSLVSVAQSKQVED 358
EGAE+ F ILD +G+E D I VYTTRPDT+FGATY+VVAPEH LL V+ Q +QVE+
Sbjct: 310 EGAELNFSILDGEGRETDKEITVYTTRPDTLFGATYMVVAPEHQLLSYFVTAEQKQQVEE 369
Query: 359 YVDLASRKSDLERTELQKEKTGVFTGCYAKNPANGEAIPIWVADYVLGSYGTGAIMAVPA 418
Y D ASRKSDLERTELQK+KTGVFTGCYAKNPANG+AIPIWVADYVL SYGTGAIMAVPA
Sbjct: 370 YKDFASRKSDLERTELQKDKTGVFTGCYAKNPANGDAIPIWVADYVLASYGTGAIMAVPA 429
Query: 419 HDSRDYEFALKYDVPVRWVVLPDGKSVNESGKAFPGEGIIANSSNKVVGLDINGLSSKEA 478
HD+RD EFALKY++P++WVV + S +++ + +PG GII NSS GLDIN LSSKEA
Sbjct: 430 HDTRDNEFALKYNIPIKWVVRNEANSSDDAKQVYPGLGIIENSSTLETGLDINQLSSKEA 489
Query: 479 ALKVIKWAEKSGNGKRKVNYKLRDWLFARQRYWGEPIPVIFLDDSGETIPLSETELPIIL 538
ALKVI+WAE++GNGK+KVNYKLRDWLFARQRYWGEPIP++ LD+SGETI +SE+ELP+ L
Sbjct: 490 ALKVIEWAERTGNGKKKVNYKLRDWLFARQRYWGEPIPILILDESGETIAISESELPLTL 549
Query: 539 PELDDFSPSGTGEPPLSKAVSWVKTTDSLSGRPATRETNTMPQWAGSCWYYLRFMDPNNS 598
PEL+DF+P+GTGEPPLSKAVSWV T D +G+PA RET+TMPQWAGSCWYYLRFMDP N
Sbjct: 550 PELNDFTPTGTGEPPLSKAVSWVNTVDPSTGKPAKRETSTMPQWAGSCWYYLRFMDPKNP 609
Query: 599 KELVDKTKERYWGPVDVYVGGAEHAVLHLLYARFWHKVLFDIGVVSTKEPFQCVINQGII 658
+ LVDK KE+YW PVDVYVGGAEHAVLHLLY+RFWHKVL+DIGVVSTKEPF+CVINQGII
Sbjct: 610 EALVDKEKEKYWSPVDVYVGGAEHAVLHLLYSRFWHKVLYDIGVVSTKEPFKCVINQGII 669
Query: 659 LGEVQYMAYRDQDGNLISAELTDMLNEHSLEKIPEEKVMKSGDYFVLKENPDMRVVARTH 718
LGEVQY A++DQ+GN +SA+ + LNEH IPEEKV+KSGD+FVLKE+P +R++ R +
Sbjct: 670 LGEVQYTAWKDQEGNYVSADTEERLNEHQQVTIPEEKVIKSGDHFVLKEDPSIRLIPRVY 729
Query: 719 KMSKSRGNVVNPDDVISEYGADSLRLYEMFMGPLRDSKTWSTGGIEGVYRFLGRTWRLIV 778
KMSKSRGNVVNPDDV+ EYGADSLRLYEMFMGP RDSKTW+T GIEGV+RFL RTWRL++
Sbjct: 730 KMSKSRGNVVNPDDVVLEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLARTWRLVI 789
Query: 779 GSPLSDGTFNDRTVSVDEEPTMEQLRCLHKCIAKVTEEIEGTRFNTGISAMMEFLNAAYK 838
G P SDG+F D T+ D+EPT+EQLR LHKCIAKVTEEIE TRFNTGIS MMEF+NAAYK
Sbjct: 790 GLPQSDGSFKDGTLVTDDEPTLEQLRTLHKCIAKVTEEIESTRFNTGISGMMEFVNAAYK 849
Query: 839 WDKHPKSVVEAFVLLLSPYAPHMAEELWSR 868
W+ P+ ++E FVLLLSPYAPHMAEELWSR
Sbjct: 850 WNNQPRGIIEPFVLLLSPYAPHMAEELWSR 879
>AT1G14610.1 | Symbols: TWN2, VALRS | valyl-tRNA synthetase /
valine--tRNA ligase (VALRS) | chr1:5008502-5014486
REVERSE LENGTH=1108
Length = 1108
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 204/903 (22%), Positives = 330/903 (36%), Gaps = 231/903 (25%)
Query: 68 VTRAYPFNEIEPKWQRFWDQHRTFRTPDDDELDMSKPKFYVLDMFPYPSGAGLHVGHPLG 127
+ + Y +E W +W++ F+ + SKP F ++ P +GA LH+GH L
Sbjct: 136 MAKQYSPATVEKSWYAWWEKSDLFKA----DAKSSKPPFVIVLPPPNVTGA-LHIGHALT 190
Query: 128 YTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKLTTVRNINR-------- 179
D + R+KRM GYN L G D G+ + + + T ++ R
Sbjct: 191 SAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKIMRDRGMTRHDVGREEFVKEVW 250
Query: 180 ---------FRSQLKSLGFSYDWDREISTIEPDYYKWTQWIFLQLFKRGLAYQAEVPVNW 230
+QL+ LG S DW RE T++ K F++L+K GL Y+ VNW
Sbjct: 251 KWKNQYGGTILTQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNW 310
Query: 231 CPALGTVLANEEV--IDGVSERGGHPVVRKPMRQWMLKITAYADRL-FEDLDDLDWPESV 287
L T +++ EV ID + E+ +LK+ Y + F L +P
Sbjct: 311 DCILRTAISDVEVEYID-IKEKT------------LLKVPGYEKPVEFGLLTSFAYP--- 354
Query: 288 KEMQRNWIGRSEGAEMEFCILDNDGKERDINIIVYTTRPDTIFGATYLVVAPEHPLLLSL 347
EG E +IV TTR +T+ G T + + P+
Sbjct: 355 ----------LEGGLGE--------------VIVATTRVETMLGDTAIAIHPDD------ 384
Query: 348 VSVAQSKQVEDYVDLASRKSDLERTELQKEKTGVFTGCYAKNPANGEAIPIWVADYVL-- 405
A+ K + G +A +P NG +PI + D +L
Sbjct: 385 ---ARYKHLH--------------------------GKFAVHPFNGRKLPI-ICDGILVD 414
Query: 406 GSYGTGAIMAVPAHDSRDYEFALKYDVPVRWVVLPDGKSVNESGKAFPG----------- 454
++GTG + PAHD D E ++ + + DGK G F G
Sbjct: 415 PNFGTGCVKITPAHDPNDCEVGKRHKLEFINIFTDDGKINTNGGSDFAGMPRFAAREAVV 474
Query: 455 -----EGIIANSSNKVVGLDINGLSSK-----EAALKVIKWAEKSGNGKRKV-------N 497
+G+ + N + L GL S+ E +K + S GK + N
Sbjct: 475 EALQKQGLYRGAKNNEMRL---GLCSRTNDVIEPMIKPQWYVNCSMIGKEALDVAITDEN 531
Query: 498 YKL------------------RDWLFARQRYWGEPIPVIFLDDSGETIPLSETELPIILP 539
KL RDW +RQ +WG IP + L E +L +
Sbjct: 532 KKLEFVPKQYTAEWRRWLENIRDWCISRQLWWGHRIPAWY-------ATLEEDQLKEVGA 584
Query: 540 ELDDFSPSGTGEPPLSKAVSWVKTTDSLSGRP--ATRETNTMPQWAGSCWYYLRFMDPNN 597
D + + T + +A G+ TR+ + + W S + L +
Sbjct: 585 YSDHWVVARTEDDAREEAAQ------KFLGKKFELTRDPDVLDTWFSSGLFPLSVL---G 635
Query: 598 SKELVDKTKERYWGPVDVYVGGAEHAVLHLLYARFWHKVLFDIGV-VSTKEPFQCVINQG 656
++ D K Y P V G H +L FW + +G+ + + PF V
Sbjct: 636 WPDVTDDFKAFY--PTSVLETG--HDILF-----FWVARMVMMGMKLGGEVPFSKVYFHP 686
Query: 657 IILGEVQYMAYRDQDGNLISAELTDMLNEHSLEKIPEEKVMKSGDYFVLKE---NPDMRV 713
+I RD G +S L ++++ LE I V G + L+E +P +
Sbjct: 687 MI---------RDAHGRKMSKSLGNVID--PLEVI--NGVTLEGLHKRLEEGNLDPKEVI 733
Query: 714 VARTHKMSKSRGNVVNPDDVISEYGADSLRLYEMFMGPLRDSKTWSTGGIEGVYRFLGRT 773
VA+ G V + + I E G D+LR + D + G ++ +
Sbjct: 734 VAK-------EGQVKDFPNGIPECGTDALRFALVSYTAQSDKINLDILRVVGYRQWCNKL 786
Query: 774 WRLI--VGSPLSDGTFNDRTVSVDEEPTMEQ--LRCLHKCIAKVTEEIEGTRFNTGISAM 829
W + L DG +T+S + P Q L L+K I+K ++ F+ + +
Sbjct: 787 WNAVRFAMMKLGDGYTPPQTLSPETMPFSCQWILSVLNKAISKTVVSLDAFEFSDAANTI 846
Query: 830 ------------MEFLNAAYKWDK--------HPKSV----VEAFVLLLSPYAPHMAEEL 865
+E + + D H + +E + LL P+ P + EEL
Sbjct: 847 YAWWQYQFCDVYIEAIKPYFAGDNPTFASERAHAQHALWISLETGLRLLHPFMPFVTEEL 906
Query: 866 WSR 868
W R
Sbjct: 907 WQR 909
>AT5G49030.3 | Symbols: OVA2 | tRNA synthetase class I (I, L, M and
V) family protein | chr5:19875091-19883251 REVERSE
LENGTH=1279
Length = 1279
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 18/180 (10%)
Query: 78 EPKWQRFWDQHRTFRTPDDDELDMSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARY 137
EP+ Q+ W++++ F+ D+ + F + D PY +G LH+GH L DI+ RY
Sbjct: 309 EPELQKLWEENQVFKRVSDNN---NGGSFILHDGPPYANG-DLHMGHALNKILKDIINRY 364
Query: 138 KRMQGYNVLHPMGWDAFGLPAEQYAIET---GTHPKLTTVRNINRFRS-----------Q 183
K +Q Y V + GWD GLP E +++ +LT ++ +
Sbjct: 365 KLLQNYKVQYVPGWDCHGLPIELKVLQSLDQEVRKELTPLKLRAKAAKFAKATVKTQMES 424
Query: 184 LKSLGFSYDWDREISTIEPDYYKWTQWIFLQLFKRGLAYQAEVPVNWCPALGTVLANEEV 243
K G DW+ T++P+Y +F Q+ +G Y+ PV+W P+ T LA E+
Sbjct: 425 FKRFGVWADWNNPYLTLDPEYEAAQIEVFGQMALKGYIYRGRKPVHWSPSSRTALAEAEL 484
>AT5G49030.1 | Symbols: OVA2 | tRNA synthetase class I (I, L, M and
V) family protein | chr5:19875091-19882291 REVERSE
LENGTH=1093
Length = 1093
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 18/180 (10%)
Query: 78 EPKWQRFWDQHRTFRTPDDDELDMSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARY 137
EP+ Q+ W++++ F+ D+ S F + D PY +G LH+GH L DI+ RY
Sbjct: 123 EPELQKLWEENQVFKRVSDNNNGGS---FILHDGPPYANG-DLHMGHALNKILKDIINRY 178
Query: 138 KRMQGYNVLHPMGWDAFGLPAEQYAIET---GTHPKLTTVRNINRFR-----------SQ 183
K +Q Y V + GWD GLP E +++ +LT ++ +
Sbjct: 179 KLLQNYKVQYVPGWDCHGLPIELKVLQSLDQEVRKELTPLKLRAKAAKFAKATVKTQMES 238
Query: 184 LKSLGFSYDWDREISTIEPDYYKWTQWIFLQLFKRGLAYQAEVPVNWCPALGTVLANEEV 243
K G DW+ T++P+Y +F Q+ +G Y+ PV+W P+ T LA E+
Sbjct: 239 FKRFGVWADWNNPYLTLDPEYEAAQIEVFGQMALKGYIYRGRKPVHWSPSSRTALAEAEL 298
>AT5G49030.2 | Symbols: OVA2 | tRNA synthetase class I (I, L, M and
V) family protein | chr5:19876365-19882291 REVERSE
LENGTH=955
Length = 955
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 18/180 (10%)
Query: 78 EPKWQRFWDQHRTFRTPDDDELDMSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARY 137
EP+ Q+ W++++ F+ D+ S F + D PY +G LH+GH L DI+ RY
Sbjct: 123 EPELQKLWEENQVFKRVSDNNNGGS---FILHDGPPYANG-DLHMGHALNKILKDIINRY 178
Query: 138 KRMQGYNVLHPMGWDAFGLPAEQYAIET---GTHPKLTTVRNINRFR-----------SQ 183
K +Q Y V + GWD GLP E +++ +LT ++ +
Sbjct: 179 KLLQNYKVQYVPGWDCHGLPIELKVLQSLDQEVRKELTPLKLRAKAAKFAKATVKTQMES 238
Query: 184 LKSLGFSYDWDREISTIEPDYYKWTQWIFLQLFKRGLAYQAEVPVNWCPALGTVLANEEV 243
K G DW+ T++P+Y +F Q+ +G Y+ PV+W P+ T LA E+
Sbjct: 239 FKRFGVWADWNNPYLTLDPEYEAAQIEVFGQMALKGYIYRGRKPVHWSPSSRTALAEAEL 298
>AT5G16715.1 | Symbols: EMB2247 | ATP binding;valine-tRNA
ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP
binding;aminoacyl-tRNA ligases | chr5:5485353-5493229
FORWARD LENGTH=974
Length = 974
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 71/164 (43%), Gaps = 24/164 (14%)
Query: 103 KPKF------YVLDMFPYPSGAGLHVGHPLGYTATDILARYKRMQGYNVLHPMGWDAFGL 156
KP F +V+ M P LH+GH + T DI+ RY RM G L G D G+
Sbjct: 92 KPNFDQGGSPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMNGRPTLWLPGTDHAGI 151
Query: 157 PAEQYAIETGTHPKLTTVRNINR-----------------FRSQLKSLGFSYDWDREIST 199
A Q +E + ++ R +Q+K LG S DW RE T
Sbjct: 152 -ATQLVVEKMLASEGIKRVDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFT 210
Query: 200 IEPDYYKWTQWIFLQLFKRGLAYQAEVPVNWCPALGTVLANEEV 243
++ + F++L +GL YQ VNW P L T +++ EV
Sbjct: 211 LDEQLSRAVVEAFVKLHDKGLIYQGSYMVNWSPNLQTAVSDLEV 254
>AT4G10320.1 | Symbols: | tRNA synthetase class I (I, L, M and V)
family protein | chr4:6397526-6404509 REVERSE
LENGTH=1190
Length = 1190
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 30/195 (15%)
Query: 70 RAYPFNEIEPKWQRFWDQHRTFRTPDDDELDMSKPKFYVLDMFPYPSGAGLHVGHPLGYT 129
+ + F E FW + F+T ++ P++ D P+ +G H GH L T
Sbjct: 8 KEFSFPRQEEDVLSFWTEIDAFKTQLKRTENL--PEYIFYDGPPFATGLP-HYGHILAGT 64
Query: 130 ATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKLTTVRN-------INRFRS 182
DI+ RY+ M G++V GWD GLP +E KL R I+++
Sbjct: 65 IKDIVTRYQTMTGHHVTRRFGWDCHGLP-----VENEIDRKLNIKRRDEVIKMGIDKYNE 119
Query: 183 QLKSLGFSY--DWDREIS-------------TIEPDYYKWTQWIFLQLFKRGLAYQAEVP 227
+ +S+ Y +W++ I+ T++ + + W+F QL+++ L Y+
Sbjct: 120 ECRSIVTRYVAEWEKVITRCGRWIDFKNDYKTMDLPFMESVWWVFSQLWEKNLVYRGFKV 179
Query: 228 VNWCPALGTVLANEE 242
+ + T L+N E
Sbjct: 180 MPYSTGCKTPLSNFE 194
>AT1G09620.1 | Symbols: | ATP binding;leucine-tRNA
ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP
binding;aminoacyl-tRNA ligases | chr1:3113077-3116455
REVERSE LENGTH=1091
Length = 1091
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 76 EIEPKWQRFWDQHRTFRTPDDDELDMSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILA 135
EIE +++W+ FR + L KF+ FPY +G LH+GH + D +
Sbjct: 16 EIEATVRKWWEDEDVFRAESCENLPKPGEKFFSTFPFPYMNGY-LHIGHAFSLSKVDFAS 74
Query: 136 RYKRMQGYNVLHPMGWDAFGLPAEQYA------IETGTHPKLTTVRNINR 179
Y R++G NVL P G+ G+P + A IE +P + T + +
Sbjct: 75 AYHRLRGANVLLPFGFHCTGMPIKASADKLRREIEQFGNPPVFTAEDTTK 124