Miyakogusa Predicted Gene

Lj4g3v0133570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0133570.1 Non Chatacterized Hit- tr|D7L0V3|D7L0V3_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,42,0.000000003,seg,NULL; PHOSPHATASE-RELATED,NULL; UBX DOMAIN
CONTAINING PROTEIN,NULL; UBX,UBX; SEP,SEP domain; NSF,CUFF.46498.1
         (306 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G04210.1 | Symbols: PUX4 | plant UBX domain containing protei...   357   8e-99
AT4G22150.1 | Symbols: PUX3 | plant UBX domain-containing protei...   350   8e-97
AT4G15410.1 | Symbols: PUX5 | serine/threonine protein phosphata...   306   2e-83
AT3G21660.1 | Symbols:  | UBX domain-containing protein | chr3:7...   140   9e-34

>AT4G04210.1 | Symbols: PUX4 | plant UBX domain containing protein 4
           | chr4:2030391-2031670 FORWARD LENGTH=303
          Length = 303

 Score =  357 bits (915), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 187/289 (64%), Positives = 215/289 (74%), Gaps = 6/289 (2%)

Query: 21  IRTLSDLNR-PXXXXXXXXXXPQEYYTGGEKSGMLVQDPSKGTDVDAIFNQARQLGAIER 79
           IRTLSDLNR            PQEYYTGGEKSGMLVQDPSK  DVD IFNQARQLGA+E 
Sbjct: 18  IRTLSDLNRRSGPDSDSDSDGPQEYYTGGEKSGMLVQDPSKKDDVDEIFNQARQLGAVEG 77

Query: 80  PIDQLQEPPRSTSFTGTGRLLSGESIQSAPQQPESVVHNIVFWTNGFTVNDGPLRSLDDP 139
           P   L+ PP S SFTGTGRLLSGE++ +  QQPE VVHNIVFW+NGFT++DGPLR LDDP
Sbjct: 78  P---LEPPPSSRSFTGTGRLLSGENVPTGNQQPEPVVHNIVFWSNGFTIDDGPLRKLDDP 134

Query: 140 ENASFLESIKKSECPKELEPADRRSSVNVNLIRRNEKYHEPEKPHVPFQGVGRTLGXXXX 199
           ENASFLESI+KSECPKELEPADRR+ V+VNL+R+ EK  E +K  V FQGVGRTLG    
Sbjct: 135 ENASFLESIRKSECPKELEPADRRAPVHVNLMRKEEKCPERQKRRVSFQGVGRTLGGSNE 194

Query: 200 XXXXXXXXXXXXX--XXXXXXXXXAGLVVDQSLPSTQIQLRLADGTRLISNFNYHHTVSD 257
                                     LV+D+++P+T IQLRLADGTRL++ FN+HHTV+D
Sbjct: 195 GSGSSSPVAPDSAPIPIQTEPAPSQSLVIDETVPTTSIQLRLADGTRLVAKFNHHHTVND 254

Query: 258 IRAFIDASRPEGARNYQLQIMGFPPKLLSDETQTIEQAGLANSVVIQKF 306
           IR FID+SRP  + NYQLQ MGFPPK L+D TQTIE+AGLANSVV+QKF
Sbjct: 255 IRGFIDSSRPGASLNYQLQTMGFPPKPLTDLTQTIEEAGLANSVVLQKF 303


>AT4G22150.1 | Symbols: PUX3 | plant UBX domain-containing protein 3
           | chr4:11731272-11732800 REVERSE LENGTH=367
          Length = 367

 Score =  350 bits (897), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 185/296 (62%), Positives = 214/296 (72%), Gaps = 10/296 (3%)

Query: 15  TSRADRIRTLSDLNR-PXXXXXXXXXXPQEYYTGGEKSGMLVQDPSK---GTDVDAIFNQ 70
           + R   IRTLSDLNR            PQEY+TGGEKSGMLVQDP+K     DVD IFNQ
Sbjct: 78  SGRTGGIRTLSDLNRRSEPDSDSDSDGPQEYFTGGEKSGMLVQDPTKEPKHDDVDEIFNQ 137

Query: 71  ARQLGAIERPIDQLQEPPRSTSFTGTGRLLSGESIQSAPQQPESVVHNIVFWTNGFTVND 130
           ARQLGA+E P   L+ P  S SFTGTGRLLSGES+ +A QQPE V+HNI+FW+NGFTV+D
Sbjct: 138 ARQLGAVEGP---LEHPSSSRSFTGTGRLLSGESVPTALQQPEPVIHNIIFWSNGFTVDD 194

Query: 131 GPLRSLDDPENASFLESIKKSECPKELEPADRRSSVNVNLIRRNEKYHEPEKPHVPFQGV 190
           GPLR LDDPENASFL+SI+KSECPKELEP D+R+ V+VNL+RR+EK  E EK  V FQGV
Sbjct: 195 GPLRKLDDPENASFLDSIRKSECPKELEPVDKRAPVHVNLMRRDEKCPEKEKLKVSFQGV 254

Query: 191 GRTLGXXXXXXXXXXXXXXXXXXXXXXXXXXAGLVVDQSLPSTQIQLRLADGTRLISNFN 250
           GRTLG                            LVVD++LPST IQLRLADGTR+++ FN
Sbjct: 255 GRTLGGASSSTASSQSNLTDVAAVQSPLQ---SLVVDETLPSTSIQLRLADGTRMVAKFN 311

Query: 251 YHHTVSDIRAFIDASRPEGARNYQLQIMGFPPKLLSDETQTIEQAGLANSVVIQKF 306
            HHTV+DIR FI+ SRP    NY LQ+MGFPPK L+D +QTIEQAGLA+SVVIQKF
Sbjct: 312 NHHTVNDIRGFIEFSRPGNPNNYTLQVMGFPPKPLTDPSQTIEQAGLASSVVIQKF 367


>AT4G15410.1 | Symbols: PUX5 | serine/threonine protein phosphatase
           2A 55 kDa regulatory subunit B prime gamma |
           chr4:8814868-8816596 FORWARD LENGTH=421
          Length = 421

 Score =  306 bits (783), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 167/297 (56%), Positives = 200/297 (67%), Gaps = 15/297 (5%)

Query: 18  ADRIRTLSDLNR-PXXXXXXXXXXPQEYYTGGEKSGMLVQDPSKGTDVDAIFNQARQLGA 76
           A  IRT +DLNR P            EYYTGG+KSGM+VQDP K  DVD +F+QARQ  A
Sbjct: 132 AGNIRTFADLNRSPADGEGSDSDEANEYYTGGQKSGMMVQDPKKVKDVDELFDQARQ-SA 190

Query: 77  IERPIDQLQEPPRS--TSFTGTGRLLSGESIQSAPQQPES-----VVHNIVFWTNGFTVN 129
           ++RP+    EP RS  TSFTG  RLLSGE++ S+PQQ +      ++H I FW NGFTVN
Sbjct: 191 VDRPV----EPSRSASTSFTGAARLLSGEAVSSSPQQQQQEQPQRIMHTITFWLNGFTVN 246

Query: 130 DGPLRSLDDPENASFLESIKKSECPKELEPADRRSSVNVNLIRRNEKYHEPEKPHVPFQG 189
           DGPLR   DPENA+F+ SI +SECP ELEPAD++  V+V+L+RR E + EP KP  PFQG
Sbjct: 247 DGPLRGFSDPENAAFMNSISRSECPSELEPADKKIPVHVDLVRRGENFTEPPKPKNPFQG 306

Query: 190 VGRTLGXXXXXXXXXXXXXXXXXXXXXXXXXXAGLVVDQSLPSTQIQLRLADGTRLISNF 249
           VGRTLG                           GLVVD + P+T IQLRLADGTRL+S F
Sbjct: 307 VGRTLGASGSGSSSAPQASSAPMNVAPAPSR--GLVVDPAAPTTSIQLRLADGTRLVSRF 364

Query: 250 NYHHTVSDIRAFIDASRPEGARNYQLQIMGFPPKLLSDETQTIEQAGLANSVVIQKF 306
           N HHTV D+R FIDASRP G++ YQL  MGFPPK L++  QTIEQAG+AN+VVIQKF
Sbjct: 365 NNHHTVRDVRGFIDASRPGGSKEYQLLTMGFPPKQLTELDQTIEQAGIANAVVIQKF 421


>AT3G21660.1 | Symbols:  | UBX domain-containing protein |
           chr3:7624495-7626654 REVERSE LENGTH=435
          Length = 435

 Score =  140 bits (354), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 79/194 (40%), Positives = 103/194 (53%), Gaps = 25/194 (12%)

Query: 113 ESVVHNIVFWTNGFTVNDGPLRSLDDPENASFLESIKKSECPKELEPADRRSSVNVNLIR 172
           E V + +  W NGFTV+D P +SLDDPENA+FL          E  P D +  V      
Sbjct: 267 EVVTYTVTIWRNGFTVDDDPFKSLDDPENAAFL----------EYMPEDNKFGVPTTTRS 316

Query: 173 RNEKYHEPEKPHVPFQGVGRTLGXXXXXXXXXXXXXXXXXXXXXXXXXXAGLVVDQSLPS 232
            +         H   Q +  +                            + LVVD + P+
Sbjct: 317 TSCSSQT----HQELQTLAGS-----------ESTSTEPPLTTTQPPSMSSLVVDPAAPT 361

Query: 233 TQIQLRLADGTRLISNFNYHHTVSDIRAFIDASRPEGARNYQLQIMGFPPKLLSDETQTI 292
           T IQL LAD TR+++ FN HHT+ DIR FID SRP+G+++YQL IMG PP  LSD  QTI
Sbjct: 362 TSIQLILADSTRIVTQFNTHHTIRDIRCFIDTSRPDGSKDYQLLIMGSPPTPLSDFDQTI 421

Query: 293 EQAGLANSVVIQKF 306
           E+AG+ANSV++QKF
Sbjct: 422 EKAGIANSVLVQKF 435



 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 6/85 (7%)

Query: 96  TGRLLSGESIQSA-PQQPESV-VHNIVFWTNGFTVNDGPLRSLDDPENASFLESIKKSEC 153
           + R +S E++ S   ++P+ V  H +  W+NGFTV+D  L++LDDPENA+FLE I   E 
Sbjct: 130 SSRSMSEETVSSELEEEPQKVFTHTVTSWSNGFTVDDSSLKTLDDPENATFLEIISSMES 189

Query: 154 PKELEPADRRSSVNVNLIRRNEKYH 178
           P+EL     +  V V +I R E+ +
Sbjct: 190 PREL----GQVRVQVKIISREEENY 210