Miyakogusa Predicted Gene

Lj4g3v0132500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0132500.1 Non Chatacterized Hit- tr|D7ME59|D7ME59_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,45.03,0.000000000000008,seg,NULL,CUFF.46495.1
         (150 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G03965.1 | Symbols:  | RING/U-box superfamily protein | chr4:...    62   1e-10
AT4G22250.1 | Symbols:  | RING/U-box superfamily protein | chr4:...    55   2e-08

>AT4G03965.1 | Symbols:  | RING/U-box superfamily protein |
           chr4:1889576-1890205 FORWARD LENGTH=209
          Length = 209

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 66/155 (42%), Gaps = 33/155 (21%)

Query: 1   MSQLGLILQESLRNEREARTIFGLLTEQIDAGDTAHXXXXXXXXXXXFTGMGCCGATWVF 60
           MSQLG+   ++     ++ T   LL  Q+D  D +            F  +GCCG TW  
Sbjct: 1   MSQLGVETSQAQPETPQSTTFLDLLRLQMDGLDRSRRRKRTLKERLGFKRIGCCGPTWGL 60

Query: 61  RPVRQ-----DHHEEARGEEGTRTVXXXXXXXXXXXXXDPDPLVPECVGPGPSGTGMNLA 115
           R         D   E R   G+  V                         GP   GMNLA
Sbjct: 61  RLTSNTGEDDDEPFENRLVSGSDHVT------------------------GPLNQGMNLA 96

Query: 116 AALAAERQFRGSGESEGE---TPLRVSLMRLLEET 147
            ALAAER +R + E+E     TPL+VSLMRLLEET
Sbjct: 97  TALAAERNYR-TEETEASGSLTPLKVSLMRLLEET 130


>AT4G22250.1 | Symbols:  | RING/U-box superfamily protein |
           chr4:11767685-11768329 REVERSE LENGTH=214
          Length = 214

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 52/112 (46%), Gaps = 35/112 (31%)

Query: 48  FTGMGCCGATWVFRPV----------RQDHHEEARGEEGTRTVXXXXXXXXXXXXXDPDP 97
           F  +GCCG TW  R            R D  EE + E G                     
Sbjct: 49  FKCIGCCGPTWNLRLTNNTTLHSPTSRDDEIEELQIETG--------------------- 87

Query: 98  LVPECVGPGPSGTGMNLAAALAAERQFRG-SGESEGE-TPLRVSLMRLLEET 147
           LV E      SGTGMNLA AL AER  RG S E+E + TP RVSLMRLLEET
Sbjct: 88  LVLE--SDHGSGTGMNLATALEAERYNRGESTEAEADMTPRRVSLMRLLEET 137