Miyakogusa Predicted Gene

Lj4g3v0120330.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0120330.1 tr|Q9S9W1|Q9S9W1_ARATH AT4g05520 protein
OS=Arabidopsis thaliana GN=T1J24.10 PE=2 SV=1,64.18,2e-19,no
description,EF-hand-like domain; EH,EPS15 homology (EH);
EF_HAND_2,EF-HAND 2; EH DOMAIN
CONTAININ,NODE_70091_length_312_cov_8.496795.path2.1
         (111 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20290.2 | Symbols: ATEHD1, EHD1 | EPS15 homology domain 1 | ...   162   4e-41
AT3G20290.1 | Symbols: ATEHD1, EHD1 | EPS15 homology domain 1 | ...   162   4e-41
AT4G05520.1 | Symbols: ATEHD2, EHD2 | EPS15 homology domain 2 | ...   147   2e-36
AT4G05520.2 | Symbols: ATEHD2, EHD2 | EPS15 homology domain 2 | ...   147   2e-36
AT1G21630.2 | Symbols:  | Calcium-binding EF hand family protein...    66   4e-12
AT1G21630.1 | Symbols:  | Calcium-binding EF hand family protein...    66   4e-12
AT1G20760.1 | Symbols:  | Calcium-binding EF hand family protein...    62   8e-11

>AT3G20290.2 | Symbols: ATEHD1, EHD1 | EPS15 homology domain 1 |
           chr3:7075057-7078655 REVERSE LENGTH=545
          Length = 545

 Score =  162 bits (410), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 73/111 (65%), Positives = 89/111 (80%)

Query: 1   MEFKPVLFGWCSKEHHAIYQEWFNYADSDSDGRITASDATMFLAMSILSRQDLKQVWAIA 60
           ME + V  G CSKE+  IY+EWF ++DSD DGRIT +DA  F  MS L R +LKQ+WAIA
Sbjct: 1   MEIESVAAGSCSKENQMIYKEWFEFSDSDGDGRITGNDAIKFFTMSNLPRPELKQIWAIA 60

Query: 61  DSKRQGYLGFQEFIIAMQLVSLAQSGHPVTHDLLTSDVDLKNLKPPTMGGL 111
           DSKRQGYLGF+EFI+AMQLVSLAQ+GH ++H++L SDVD KN+ PPTM GL
Sbjct: 61  DSKRQGYLGFKEFIVAMQLVSLAQTGHEISHEVLISDVDFKNINPPTMEGL 111


>AT3G20290.1 | Symbols: ATEHD1, EHD1 | EPS15 homology domain 1 |
           chr3:7075057-7078655 REVERSE LENGTH=545
          Length = 545

 Score =  162 bits (410), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 73/111 (65%), Positives = 89/111 (80%)

Query: 1   MEFKPVLFGWCSKEHHAIYQEWFNYADSDSDGRITASDATMFLAMSILSRQDLKQVWAIA 60
           ME + V  G CSKE+  IY+EWF ++DSD DGRIT +DA  F  MS L R +LKQ+WAIA
Sbjct: 1   MEIESVAAGSCSKENQMIYKEWFEFSDSDGDGRITGNDAIKFFTMSNLPRPELKQIWAIA 60

Query: 61  DSKRQGYLGFQEFIIAMQLVSLAQSGHPVTHDLLTSDVDLKNLKPPTMGGL 111
           DSKRQGYLGF+EFI+AMQLVSLAQ+GH ++H++L SDVD KN+ PPTM GL
Sbjct: 61  DSKRQGYLGFKEFIVAMQLVSLAQTGHEISHEVLISDVDFKNINPPTMEGL 111


>AT4G05520.1 | Symbols: ATEHD2, EHD2 | EPS15 homology domain 2 |
           chr4:2804522-2807833 FORWARD LENGTH=546
          Length = 546

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 82/106 (77%)

Query: 6   VLFGWCSKEHHAIYQEWFNYADSDSDGRITASDATMFLAMSILSRQDLKQVWAIADSKRQ 65
           +  G C KEH  IY+EWFN ADSD DGR++ +DAT F AMS LSRQ+LKQVWA+ADSKRQ
Sbjct: 7   ISIGSCLKEHQKIYKEWFNIADSDGDGRVSGNDATKFFAMSKLSRQELKQVWAVADSKRQ 66

Query: 66  GYLGFQEFIIAMQLVSLAQSGHPVTHDLLTSDVDLKNLKPPTMGGL 111
           G+LG  EFI AM+LVSLAQ GH +T DLL   +D+K+++ P + GL
Sbjct: 67  GFLGLSEFITAMKLVSLAQEGHEITSDLLKGSIDMKSVELPVLEGL 112


>AT4G05520.2 | Symbols: ATEHD2, EHD2 | EPS15 homology domain 2 |
           chr4:2804522-2807833 FORWARD LENGTH=545
          Length = 545

 Score =  147 bits (370), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 82/106 (77%)

Query: 6   VLFGWCSKEHHAIYQEWFNYADSDSDGRITASDATMFLAMSILSRQDLKQVWAIADSKRQ 65
           +  G C KEH  IY+EWFN ADSD DGR++ +DAT F AMS LSRQ+LKQVWA+ADSKRQ
Sbjct: 7   ISIGSCLKEHQKIYKEWFNIADSDGDGRVSGNDATKFFAMSKLSRQELKQVWAVADSKRQ 66

Query: 66  GYLGFQEFIIAMQLVSLAQSGHPVTHDLLTSDVDLKNLKPPTMGGL 111
           G+LG  EFI AM+LVSLAQ GH +T DLL   +D+K+++ P + GL
Sbjct: 67  GFLGLSEFITAMKLVSLAQEGHEITSDLLKGSIDMKSVELPVLEGL 112


>AT1G21630.2 | Symbols:  | Calcium-binding EF hand family protein
          | chr1:7581457-7587796 FORWARD LENGTH=1247
          Length = 1247

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 49/77 (63%)

Query: 18 IYQEWFNYADSDSDGRITASDATMFLAMSILSRQDLKQVWAIADSKRQGYLGFQEFIIAM 77
          ++  +F  AD D DG I+ ++A  F   S L +  L QVW+ ADSK+ GYLG  EF  A+
Sbjct: 12 LFDTYFRRADLDGDGHISGAEAVAFFQGSNLPKHVLAQVWSYADSKKAGYLGRAEFYNAL 71

Query: 78 QLVSLAQSGHPVTHDLL 94
          +LV++AQS   +T +++
Sbjct: 72 KLVTVAQSRRELTAEIV 88



 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%)

Query: 19  YQEWFNYADSDSDGRITASDATMFLAMSILSRQDLKQVWAIADSKRQGYLGFQEFIIAMQ 78
           Y + F   D+D DG+IT + A        L R  LKQVW ++D      L  +EF IA+ 
Sbjct: 428 YTKVFVQVDTDRDGKITGNQARNLFLSWRLPRDALKQVWDLSDQDNDSMLSLREFCIAVY 487

Query: 79  LVSLAQSGHPV 89
           L+   + G P+
Sbjct: 488 LMERYREGRPL 498


>AT1G21630.1 | Symbols:  | Calcium-binding EF hand family protein
          | chr1:7581457-7587796 FORWARD LENGTH=1218
          Length = 1218

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 49/77 (63%)

Query: 18 IYQEWFNYADSDSDGRITASDATMFLAMSILSRQDLKQVWAIADSKRQGYLGFQEFIIAM 77
          ++  +F  AD D DG I+ ++A  F   S L +  L QVW+ ADSK+ GYLG  EF  A+
Sbjct: 12 LFDTYFRRADLDGDGHISGAEAVAFFQGSNLPKHVLAQVWSYADSKKAGYLGRAEFYNAL 71

Query: 78 QLVSLAQSGHPVTHDLL 94
          +LV++AQS   +T +++
Sbjct: 72 KLVTVAQSRRELTAEIV 88



 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%)

Query: 19  YQEWFNYADSDSDGRITASDATMFLAMSILSRQDLKQVWAIADSKRQGYLGFQEFIIAMQ 78
           Y + F   D+D DG+IT + A        L R  LKQVW ++D      L  +EF IA+ 
Sbjct: 428 YTKVFVQVDTDRDGKITGNQARNLFLSWRLPRDALKQVWDLSDQDNDSMLSLREFCIAVY 487

Query: 79  LVSLAQSGHPV 89
           L+   + G P+
Sbjct: 488 LMERYREGRPL 498


>AT1G20760.1 | Symbols:  | Calcium-binding EF hand family protein |
           chr1:7209515-7214773 FORWARD LENGTH=1019
          Length = 1019

 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 56/93 (60%), Gaps = 3/93 (3%)

Query: 19  YQEWFNYADSDSDGRITASDATMFLAMSILSRQDLKQVWAIADSKRQGYLGFQEFIIAMQ 78
           ++ +F  AD D DGRI+ ++A  F   S LS+Q L Q+W+++D    G+L  Q F  +++
Sbjct: 11  FEAYFKRADLDGDGRISGAEAVGFFQGSGLSKQVLAQIWSLSDRSHSGFLDRQNFYNSLR 70

Query: 79  LVSLAQSGHPVTHDLLTSDVDLK---NLKPPTM 108
           LV++AQS   +T +++ + ++      + PP +
Sbjct: 71  LVTVAQSKRDLTPEIVNAALNTPAAAKIPPPKI 103



 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 38/78 (48%)

Query: 19  YQEWFNYADSDSDGRITASDATMFLAMSILSRQDLKQVWAIADSKRQGYLGFQEFIIAMQ 78
           Y + F   DSD DG+IT   A        L R+ LK VW ++D      L  +EF I++ 
Sbjct: 363 YTKVFMEVDSDKDGKITGEQARNLFLSWRLPREVLKHVWELSDQDNDTMLSLREFCISLY 422

Query: 79  LVSLAQSGHPVTHDLLTS 96
           L+   + G P+   L +S
Sbjct: 423 LMERYREGRPLPTALPSS 440