Miyakogusa Predicted Gene

Lj4g3v0094910.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0094910.3 Non Chatacterized Hit- tr|E0VZ46|E0VZ46_PEDHC
snRNA-activating protein complex subunit, putative
OS=,26.4,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,snRNA-activating protein complex, subunit 3; seg,NULL;
zf,CUFF.46395.3
         (361 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28560.2 | Symbols: SRD2 | snRNA activating complex family pr...   328   3e-90
AT1G28560.1 | Symbols: SRD2 | snRNA activating complex family pr...   328   4e-90

>AT1G28560.2 | Symbols: SRD2 | snRNA activating complex family
           protein | chr1:10038197-10040382 REVERSE LENGTH=386
          Length = 386

 Score =  328 bits (842), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 167/317 (52%), Positives = 222/317 (70%), Gaps = 15/317 (4%)

Query: 51  LDKVEQIVTIKRNQEEDMAAARLHSFNPVCRTNESSGKSLRT-----ERMMALRSTSST- 104
           L KVEQ+  +K+ QEED AA  LH F+   +T+E+ GK +       E+M +LR   +  
Sbjct: 79  LVKVEQLAKLKQKQEEDKAAVTLHCFS---KTSET-GKDVVAPPEGFEQMQSLRFIDNNY 134

Query: 105 RKVNSGGLHEHTPVQYPEVVLSVEIYHNVRKGLKTQELLVLGRQTLTSLRDKIFCSTDQV 164
            K+    +       +PEV+L VEIY N RK +KTQE LVLGRQ LT L+D I C+TDQV
Sbjct: 135 TKLKPSDIQGQVDPLFPEVILCVEIY-NSRK-VKTQEFLVLGRQMLTELKDNIHCATDQV 192

Query: 165 MQKAGQHDPSGFFLIEDIFYTDLRDPSAIDLTRPILDWVQNSNEEAQKKWEYIITGELKQ 224
           MQKAG++DPSG+FLIED+F+ DLR+PSA D + PILDW+ NS +EA KKWE ++TGEL++
Sbjct: 193 MQKAGKYDPSGYFLIEDVFHNDLRNPSAKDYSYPILDWLWNSKDEALKKWECVLTGELQK 252

Query: 225 KQKAIMGTVSTPRMPHFSSIEMHKIRFCDLSFRLGAGYLYCHQGECSHTLVVRDMRLMHP 284
           KQK ++G   +  +P + + +M    FCD+ FR+GA Y+YCHQG+C HT+V+RDMR+ HP
Sbjct: 253 KQKLVLGEAKSVDLPRYRTADMQSTHFCDIRFRVGASYVYCHQGDCKHTIVIRDMRMSHP 312

Query: 285 DDVNNRAVYPRVTFQLKLRFQKCRVCKIFRATKVTVDDRWTSENPCYFCDDCFALLHLAE 344
           +DV NRA YP + F  K R QKC VCKI RA+KV VDD+W SEN  YFCD CF LLH +E
Sbjct: 313 EDVQNRAAYP-IMFWPKRRIQKCGVCKIKRASKVAVDDKWASENSSYFCDVCFELLH-SE 370

Query: 345 DGSPLYTEYLEYDYHHD 361
           +G PL  ++  +DY H+
Sbjct: 371 EG-PLNCDFPVFDYVHE 386


>AT1G28560.1 | Symbols: SRD2 | snRNA activating complex family
           protein | chr1:10038197-10040382 REVERSE LENGTH=375
          Length = 375

 Score =  328 bits (841), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 167/317 (52%), Positives = 222/317 (70%), Gaps = 15/317 (4%)

Query: 51  LDKVEQIVTIKRNQEEDMAAARLHSFNPVCRTNESSGKSLRT-----ERMMALRSTSST- 104
           L KVEQ+  +K+ QEED AA  LH F+   +T+E+ GK +       E+M +LR   +  
Sbjct: 68  LVKVEQLAKLKQKQEEDKAAVTLHCFS---KTSET-GKDVVAPPEGFEQMQSLRFIDNNY 123

Query: 105 RKVNSGGLHEHTPVQYPEVVLSVEIYHNVRKGLKTQELLVLGRQTLTSLRDKIFCSTDQV 164
            K+    +       +PEV+L VEIY N RK +KTQE LVLGRQ LT L+D I C+TDQV
Sbjct: 124 TKLKPSDIQGQVDPLFPEVILCVEIY-NSRK-VKTQEFLVLGRQMLTELKDNIHCATDQV 181

Query: 165 MQKAGQHDPSGFFLIEDIFYTDLRDPSAIDLTRPILDWVQNSNEEAQKKWEYIITGELKQ 224
           MQKAG++DPSG+FLIED+F+ DLR+PSA D + PILDW+ NS +EA KKWE ++TGEL++
Sbjct: 182 MQKAGKYDPSGYFLIEDVFHNDLRNPSAKDYSYPILDWLWNSKDEALKKWECVLTGELQK 241

Query: 225 KQKAIMGTVSTPRMPHFSSIEMHKIRFCDLSFRLGAGYLYCHQGECSHTLVVRDMRLMHP 284
           KQK ++G   +  +P + + +M    FCD+ FR+GA Y+YCHQG+C HT+V+RDMR+ HP
Sbjct: 242 KQKLVLGEAKSVDLPRYRTADMQSTHFCDIRFRVGASYVYCHQGDCKHTIVIRDMRMSHP 301

Query: 285 DDVNNRAVYPRVTFQLKLRFQKCRVCKIFRATKVTVDDRWTSENPCYFCDDCFALLHLAE 344
           +DV NRA YP + F  K R QKC VCKI RA+KV VDD+W SEN  YFCD CF LLH +E
Sbjct: 302 EDVQNRAAYP-IMFWPKRRIQKCGVCKIKRASKVAVDDKWASENSSYFCDVCFELLH-SE 359

Query: 345 DGSPLYTEYLEYDYHHD 361
           +G PL  ++  +DY H+
Sbjct: 360 EG-PLNCDFPVFDYVHE 375