Miyakogusa Predicted Gene

Lj4g3v0073480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0073480.1 Non Chatacterized Hit- tr|A5B095|A5B095_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,85.45,1e-18,Vps53_N,Vps53-like,
N-terminal,gene.Ljchr4_pseudomol_20120830.path1.gene105.1
         (135 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G50500.1 | Symbols: HIT1, ATVPS53, VPS53 | Membrane trafficki...   120   2e-28
AT1G50500.2 | Symbols: HIT1 | Membrane trafficking VPS53 family ...   112   6e-26
AT1G50970.1 | Symbols:  | Membrane trafficking VPS53 family prot...    92   1e-19

>AT1G50500.1 | Symbols: HIT1, ATVPS53, VPS53 | Membrane trafficking
           VPS53 family protein | chr1:18708217-18715597 REVERSE
           LENGTH=828
          Length = 828

 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/129 (57%), Positives = 75/129 (58%), Gaps = 44/129 (34%)

Query: 1   MFPNEASLSGVEPLMQKIQNEIRTVDAGILSAVRQQSNSGTKAKEDLAAATCAVELTYH- 59
           MFP EASL+GVEPLMQKIQ EIR VDA ILSAVRQQSNSGTKAKEDLA AT AVE   H 
Sbjct: 13  MFPTEASLTGVEPLMQKIQGEIRRVDASILSAVRQQSNSGTKAKEDLADATRAVEELSHK 72

Query: 60  -------------------------------------------MAVSAVEQLQVMASKRQ 76
                                                      M VSAVEQLQVMASKRQ
Sbjct: 73  IQEIKSKAEQSEAMVQEICRDIKKLDFAKKNITTTITALHRLTMLVSAVEQLQVMASKRQ 132

Query: 77  YKEAAAQLE 85
           YKEAAAQLE
Sbjct: 133 YKEAAAQLE 141


>AT1G50500.2 | Symbols: HIT1 | Membrane trafficking VPS53 family
           protein | chr1:18708217-18715597 REVERSE LENGTH=847
          Length = 847

 Score =  112 bits (281), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/125 (56%), Positives = 72/125 (57%), Gaps = 44/125 (35%)

Query: 5   EASLSGVEPLMQKIQNEIRTVDAGILSAVRQQSNSGTKAKEDLAAATCAVELTYH----- 59
           EASL+GVEPLMQKIQ EIR VDA ILSAVRQQSNSGTKAKEDLA AT AVE   H     
Sbjct: 36  EASLTGVEPLMQKIQGEIRRVDASILSAVRQQSNSGTKAKEDLADATRAVEELSHKIQEI 95

Query: 60  ---------------------------------------MAVSAVEQLQVMASKRQYKEA 80
                                                  M VSAVEQLQVMASKRQYKEA
Sbjct: 96  KSKAEQSEAMVQEICRDIKKLDFAKKNITTTITALHRLTMLVSAVEQLQVMASKRQYKEA 155

Query: 81  AAQLE 85
           AAQLE
Sbjct: 156 AAQLE 160


>AT1G50970.1 | Symbols:  | Membrane trafficking VPS53 family protein
           | chr1:18896323-18900268 FORWARD LENGTH=569
          Length = 569

 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/129 (46%), Positives = 65/129 (50%), Gaps = 44/129 (34%)

Query: 1   MFPNEASLSGVEPLMQKIQNEIRTVDAGILSAVRQQSNSGTKAKEDLAAATCAVELTYH- 59
           MFP EASLS VE  MQKI +EIR VDA IL+ V QQ NSGT+AKE+L  A CA E   H 
Sbjct: 13  MFPVEASLSCVESFMQKICDEIRRVDATILAVVSQQGNSGTRAKENLNDAICAAEELSHK 72

Query: 60  -------------------------------------------MAVSAVEQLQVMASKRQ 76
                                                      M VSAV+QLQVM SKRQ
Sbjct: 73  IQEIKSKAEQTEAMVQDICSDIKKLDFAKKNITTAVTALSRLTMLVSAVQQLQVMTSKRQ 132

Query: 77  YKEAAAQLE 85
           YKEAA QLE
Sbjct: 133 YKEAATQLE 141