Miyakogusa Predicted Gene

Lj4g3v0070820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0070820.1 tr|B9H0U7|B9H0U7_POPTR Chromatin remodeling
complex subunit (Fragment) OS=Populus trichocarpa
GN=CHR,74.07,1e-18,ATP BINDING / DNA BINDING / HELICASE,NULL;
SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT
REGULAT,NODE_62797_length_208_cov_14.543269.path1.1
         (68 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containin...    76   4e-15
AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 | chr2:91...    71   1e-13
AT3G32330.1 | Symbols:  | DNA repair protein-related | chr3:1327...    48   2e-06
AT3G32280.1 | Symbols:  | ATP-dependent helicase family protein ...    47   3e-06
AT3G31900.1 | Symbols:  | ATP-dependent helicase family protein ...    46   5e-06

>AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containing
           protein / helicase domain-containing protein |
           chr2:7097638-7101182 FORWARD LENGTH=888
          Length = 888

 Score = 76.3 bits (186), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 39/53 (73%)

Query: 16  INVAEDDIMFTEISAHPRHMKQMKSHQIEGFNFLVRNLVGDNPGGCILAHAPG 68
           +  +E+ +M   ++AHP H  +MK HQIEGF FL  NLV D+PGGCI+AHAPG
Sbjct: 328 LKFSEEGLMIGGLAAHPTHAAEMKPHQIEGFQFLCSNLVADDPGGCIMAHAPG 380


>AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 |
           chr2:9179622-9182356 REVERSE LENGTH=816
          Length = 816

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 41/68 (60%)

Query: 1   MADSWNTKAKVDVYGINVAEDDIMFTEISAHPRHMKQMKSHQIEGFNFLVRNLVGDNPGG 60
           M +  N +   D  GI  +  +I+  ++  HP H ++M+ HQ EGF FL  NL  D PGG
Sbjct: 228 MREKENGETSRDFSGIQSSHTNILGEKMFIHPWHDQEMRPHQTEGFRFLCNNLAADEPGG 287

Query: 61  CILAHAPG 68
           CILAHAPG
Sbjct: 288 CILAHAPG 295


>AT3G32330.1 | Symbols:  | DNA repair protein-related |
          chr3:13276082-13277155 FORWARD LENGTH=327
          Length = 327

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 28/52 (53%)

Query: 16 INVAEDDIMFTEISAHPRHMKQMKSHQIEGFNFLVRNLVGDNPGGCILAHAP 67
          + V +D    T I  HP H   MK H  E  NFL +NLV +N  GCI+A  P
Sbjct: 1  MRVPKDGFSGTGIFPHPFHKMIMKPHHFEILNFLYKNLVVENSNGCIIAQTP 52


>AT3G32280.1 | Symbols:  | ATP-dependent helicase family protein |
           chr3:13233832-13240154 FORWARD LENGTH=474
          Length = 474

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 28/52 (53%)

Query: 16  INVAEDDIMFTEISAHPRHMKQMKSHQIEGFNFLVRNLVGDNPGGCILAHAP 67
           + V +D    T I  HP H   MK H  E  NFL +NLV +N  GCI+A  P
Sbjct: 290 MRVPKDGFSGTGIFPHPLHRMIMKPHHFEILNFLYKNLVVENSNGCIIAQTP 341


>AT3G31900.1 | Symbols:  | ATP-dependent helicase family protein |
           chr3:12875071-12877422 FORWARD LENGTH=393
          Length = 393

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 27/52 (51%)

Query: 16  INVAEDDIMFTEISAHPRHMKQMKSHQIEGFNFLVRNLVGDNPGGCILAHAP 67
           + V +D    T I  HP H   MK H  E  NFL +NLV +N  GCI+   P
Sbjct: 191 MRVPKDSFSGTGIFPHPLHKMIMKPHHFEILNFLCKNLVVENSNGCIIDQTP 242