Miyakogusa Predicted Gene

Lj4g3v0060680.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0060680.2 tr|D2VPH7|D2VPH7_NAEGR Predicted protein
OS=Naegleria gruberi GN=NAEGRDRAFT_70864 PE=4
SV=1,29.09,0.000000006,PHOSPHATIDYLCHOLINE TRANSFER PROTEIN,NULL;
START,Lipid-binding START; Bet v1-like,NULL; no descripti,CUFF.46372.2
         (238 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G49800.1 | Symbols:  | Polyketide cyclase/dehydrase and lipid...   361   e-100

>AT5G49800.1 | Symbols:  | Polyketide cyclase/dehydrase and lipid
           transport superfamily protein | chr5:20234771-20236135
           REVERSE LENGTH=242
          Length = 242

 Score =  361 bits (926), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/232 (75%), Positives = 207/232 (89%), Gaps = 5/232 (2%)

Query: 7   PCSRSWSISEDSLKRYVQFASESCIQELLAASDTNR-GSGNDGWKVLTLD-NGVEISKRR 64
           P SRSWS+SE+SL+RYV+FASESCIQELL++S+  R G+ ++GWK++  D NGVEISKR 
Sbjct: 6   PSSRSWSVSEESLRRYVRFASESCIQELLSSSEAGRFGNASNGWKMVRHDSNGVEISKRD 65

Query: 65  SGSLHTFRSRWVLRSVSPQQFITVANAIDAAKQWDSDLVEARYIKDIEDNLSIIRLRFGD 124
           SGSLH FRSR +L SVSP+QFITVANAIDAAKQW+ DLVEA +I+DI++NLS+IRLRFG+
Sbjct: 66  SGSLHAFRSRRILTSVSPEQFITVANAIDAAKQWEGDLVEATHIRDIDENLSVIRLRFGE 125

Query: 125 NSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHP---KQNNAIRGLLLQSGW 181
           NSKPLFRNREFI+YERRETM+DGTLVVAVASLPKE+A GL P   K+NN IRG L++SGW
Sbjct: 126 NSKPLFRNREFIIYERRETMQDGTLVVAVASLPKEMAEGLEPTEKKKNNYIRGFLVESGW 185

Query: 182 VVDKLEDDSCVVTYVVQLDPAGWLPKCFVNRLNTKLVMIIENLRKLAQTACP 233
           V++KLED SC++TYVVQLDPAGWLPKCFVNRLNTKLVMII+NLRK+AQ   P
Sbjct: 186 VLEKLEDTSCMITYVVQLDPAGWLPKCFVNRLNTKLVMIIDNLRKVAQAYLP 237