Miyakogusa Predicted Gene
- Lj4g3v0049640.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0049640.1 Non Chatacterized Hit- tr|I1KNQ6|I1KNQ6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.42426
PE,83.97,0,GTP-BINDING PROTEIN ENGA,GTP-binding protein EngA;
MSS1/TRME-RELATED GTP-BINDING PROTEIN,NULL; P-loo,CUFF.46576.1
(387 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G39960.1 | Symbols: | GTP binding;GTP binding | chr5:1599419... 483 e-136
AT3G12080.1 | Symbols: emb2738 | GTP-binding family protein | ch... 129 4e-30
AT3G12080.2 | Symbols: emb2738 | GTP-binding family protein | ch... 92 8e-19
AT1G78010.1 | Symbols: | tRNA modification GTPase, putative | c... 59 6e-09
>AT5G39960.1 | Symbols: | GTP binding;GTP binding |
chr5:15994195-15996820 FORWARD LENGTH=621
Length = 621
Score = 483 bits (1242), Expect = e-136, Method: Compositional matrix adjust.
Identities = 248/390 (63%), Positives = 303/390 (77%), Gaps = 10/390 (2%)
Query: 1 MNKSEXXXXXXXXXXXXGNEMCRLGFGDPIAISAETGLGMHDLYLSLKPLLEDYMLRVLN 60
MNKSE +E LGFG+PIAISAETGLGM LY L+PLLEDY + +LN
Sbjct: 238 MNKSESIGSLDEV----ASEALALGFGEPIAISAETGLGMTTLYEVLRPLLEDYTVEMLN 293
Query: 61 VNDEGAQENSNSEDTSSPEAEESKLPLQLAIVGRPNVGKSTLMNTLLQEDRVLVGPEAGL 120
D G+Q++ +++ S E +ESKLPLQLAIVG+PNVGKSTL+N LL+E+RVLVGPEAGL
Sbjct: 294 --DIGSQDDVLTDENLSDEIDESKLPLQLAIVGKPNVGKSTLLNALLEEERVLVGPEAGL 351
Query: 121 TRDSIRTQFEFEGRTIYLVDTAGWLQRTKQEKGAASLSIMQSRKSLLRAHVVALVLDAEE 180
TRD++R QFEF+GRT+YLVDTAGWL+RT+++KG ASLSIMQSRKSL+RAHV+ALVLDAEE
Sbjct: 352 TRDAVRVQFEFQGRTVYLVDTAGWLERTERDKGPASLSIMQSRKSLMRAHVIALVLDAEE 411
Query: 181 IINERRSMKHAEVVIARRAVEEGRGLVVIVNKMDLLRGKASS--FEKVMXXXXXXXXXXX 238
II + SM H+EVVIARRAVEEGRGLVVIVNKMD LRG+ +S ++K+
Sbjct: 412 IIKAKCSMTHSEVVIARRAVEEGRGLVVIVNKMDRLRGRENSEMYKKIKEAVPIEIQTVI 471
Query: 239 XXXXXXXXXFTSALEGRGRTAVLEQVIDTYEKWCSRLSTARLNRWMQKVMSRHSWKDQAA 298
F SALEGRGR V+++V DTY++WCSRLST RLNRW++KVMSRHSWKD A+
Sbjct: 472 PQITGIPVVFISALEGRGRMEVMKEVTDTYKRWCSRLSTGRLNRWLRKVMSRHSWKDTAS 531
Query: 299 QPKIKYFTQVKARPPTFVAFLRGKTQLADTDIRFLTKSLKEDFDLGGIPIRIMQRAVTK- 357
QPKIK+FTQVKARPPTFVAF+ GKTQL ++DIRFLT+SLKEDFDLGG PIRI+QR + +
Sbjct: 532 QPKIKFFTQVKARPPTFVAFVSGKTQLLESDIRFLTRSLKEDFDLGGTPIRIIQRVIPRA 591
Query: 358 -KEVSGNSKSGHSAGRVAERMMSDKRSVLA 386
+G SG+S+ RV +R SDKR++ A
Sbjct: 592 PPSGTGGGGSGNSSSRVVQRTTSDKRTLSA 621
>AT3G12080.1 | Symbols: emb2738 | GTP-binding family protein |
chr3:3847851-3851980 FORWARD LENGTH=663
Length = 663
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 158/304 (51%), Gaps = 20/304 (6%)
Query: 89 LAIVGRPNVGKSTLMNTLLQEDRVLVGPEAGLTRDSIRTQFEF-EGRTIYLVDTAGWLQR 147
+AI+GRPNVGKS+++N L++EDR +V P +G TRD+I +F +G L+DTAG ++
Sbjct: 371 IAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKK 430
Query: 148 TKQEKGAAS---LSIMQSRKSLLRAHVVALVLDAEEIINERRSMKHAEVVIARRAVEEGR 204
+ ++ +S+ ++ +++ R+ VVALV++A I E+ ++ IA R EG+
Sbjct: 431 SSVASSGSTTEAMSVNRAFRAIRRSDVVALVIEAMACITEQ------DLKIAERIEREGK 484
Query: 205 GLVVIVNKMDLLRGKASSFEKVMXXXXXXXXXXXXXXXXXXXXFTSALEGRGRTAVLEQV 264
G +V+VNK D + K ++ +++A+ G ++
Sbjct: 485 GCLVVVNKWDTIPNKN---QETAAHYEDDVREKLRSLKWAPIVYSTAITGHSVDNIVVAA 541
Query: 265 IDTYEKWCSRLSTARLNRWMQKVMSRHSWKDQ--AAQPKIKYFTQVKARPPTFVAFLRGK 322
++ RLSTA LN+ +++ ++ S + ++ Y TQ RPPTFV F+
Sbjct: 542 ATVQKERSRRLSTAILNQVIREAVAFKSPPRTRGGKRGRVYYCTQAAIRPPTFVFFVNDA 601
Query: 323 TQLADTDIRFLTKSLKEDFDLGGIPIRIMQRAVTKKEVSGNSKSGHS---AGRVAERMMS 379
+DT R++ K L+ D G PIR++ R ++K N G + AG +R ++
Sbjct: 602 KLFSDTYRRYMEKQLRTDAGFAGTPIRLLWR--SRKRSDKNGGGGGTMRMAGLTRQRNLA 659
Query: 380 DKRS 383
KR+
Sbjct: 660 TKRT 663
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 88 QLAIVGRPNVGKSTLMNTLLQEDRVLVGPEAGLTRDSIRTQFEFEGRTIYLVDTAGWLQR 147
++AIVGRPNVGKS L N L+ E+R +V E G+TRD + + + + +VDT G +
Sbjct: 160 RVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDTGGVMTV 219
Query: 148 TKQEKG 153
+K G
Sbjct: 220 SKSPSG 225
>AT3G12080.2 | Symbols: emb2738 | GTP-binding family protein |
chr3:3847851-3851677 FORWARD LENGTH=587
Length = 587
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 86/135 (63%), Gaps = 10/135 (7%)
Query: 89 LAIVGRPNVGKSTLMNTLLQEDRVLVGPEAGLTRDSIRTQFEF-EGRTIYLVDTAGWLQR 147
+AI+GRPNVGKS+++N L++EDR +V P +G TRD+I +F +G L+DTAG ++
Sbjct: 371 IAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKK 430
Query: 148 TKQEKGAAS---LSIMQSRKSLLRAHVVALVLDAEEIINERRSMKHAEVVIARRAVEEGR 204
+ ++ +S+ ++ +++ R+ VVALV++A I E+ ++ IA R EG+
Sbjct: 431 SSVASSGSTTEAMSVNRAFRAIRRSDVVALVIEAMACITEQ------DLKIAERIEREGK 484
Query: 205 GLVVIVNKMDLLRGK 219
G +V+VNK D + K
Sbjct: 485 GCLVVVNKWDTIPNK 499
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 88 QLAIVGRPNVGKSTLMNTLLQEDRVLVGPEAGLTRDSIRTQFEFEGRTIYLVDTAGWLQR 147
++AIVGRPNVGKS L N L+ E+R +V E G+TRD + + + + +VDT G +
Sbjct: 160 RVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVVDTGGVMTV 219
Query: 148 TKQEKG 153
+K G
Sbjct: 220 SKSPSG 225
>AT1G78010.1 | Symbols: | tRNA modification GTPase, putative |
chr1:29333535-29336297 FORWARD LENGTH=560
Length = 560
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%)
Query: 87 LQLAIVGRPNVGKSTLMNTLLQEDRVLVGPEAGLTRDSIRTQFEFEGRTIYLVDTAG 143
LQ+AIVGRPNVGKS+L+N + +R +V AG TRD + G I L+DTAG
Sbjct: 318 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITLLDTAG 374