Miyakogusa Predicted Gene
- Lj4g3v0047620.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0047620.1 Non Chatacterized Hit- tr|I1KNQ8|I1KNQ8_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,76.07,0,dnaX_nterm:
DNA polymerase III, subunit gamma and ,DNA polymerase III, subunit
gamma/ tau; P-loop co,gene.g51442.t1.1
(710 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G02480.1 | Symbols: STI | AAA-type ATPase family protein | ch... 711 0.0
AT1G14460.1 | Symbols: | AAA-type ATPase family protein | chr1:... 622 e-178
AT4G24790.2 | Symbols: | AAA-type ATPase family protein | chr4:... 248 1e-65
AT4G24790.1 | Symbols: | AAA-type ATPase family protein | chr4:... 248 1e-65
AT5G45720.2 | Symbols: | AAA-type ATPase family protein | chr5:... 229 5e-60
AT5G45720.1 | Symbols: | AAA-type ATPase family protein | chr5:... 229 5e-60
AT4G18820.1 | Symbols: | AAA-type ATPase family protein | chr4:... 218 2e-56
AT1G21690.1 | Symbols: EMB1968, RFC4 | ATPase family associated ... 66 7e-11
AT1G21690.3 | Symbols: EMB1968 | ATPase family associated with v... 65 1e-10
AT1G21690.4 | Symbols: EMB1968 | ATPase family associated with v... 65 2e-10
AT1G21690.2 | Symbols: EMB1968, RFC4 | ATPase family associated ... 59 8e-09
AT1G77470.1 | Symbols: RFC3, RFC5 | replication factor C subunit... 57 7e-08
AT1G63160.1 | Symbols: RFC2 | replication factor C 2 | chr1:2342... 56 9e-08
>AT2G02480.1 | Symbols: STI | AAA-type ATPase family protein |
chr2:661093-665337 FORWARD LENGTH=1218
Length = 1218
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/725 (56%), Positives = 474/725 (65%), Gaps = 55/725 (7%)
Query: 2 RVSDPSKLHLKKELTQIRKAARVLRDPGTTXXXXXXXXXXXXVAAWKDSGSTRFTATANP 61
RVSD SKLHLKKELTQIRKA RVLRDPGTT VA + T +
Sbjct: 5 RVSDLSKLHLKKELTQIRKAGRVLRDPGTTSSWKSPLDSSRSVALLE----TPASRNGGS 60
Query: 62 NSQLDSALPPSIN--DKDKRVFLYNWKNYKSSSEKSGVPKYNVXXXXXXXXXXXXXXXXX 119
+SQ S N K+K+VFLYNWK KSSSEKSG+ K
Sbjct: 61 SSQFPIRGESSTNRRGKEKKVFLYNWKTQKSSSEKSGLAK---NGKEEEEEEEDASSWTQ 117
Query: 120 XXXXXXXXXXXARNACDLKSDAGTRASI-FLCGDANPVSKGTPAARRTT----PMKKKSK 174
ARN D AS+ F C D N S+G R++ K K K
Sbjct: 118 ASVNDDDDVSDARNGGDSYRREIQSASMGFRCRDTNLASQGVSKMRKSNVGSCKKKSKKK 177
Query: 175 KTNPHLDFLAAKHQHNRQTNLGRKLVSSNSKPLLEGRPSMPFFTRDDLVEH-----SDDT 229
++ LD L+ K+Q RDD+V SDDT
Sbjct: 178 ISSSRLDCLS-KYQ-----------------------------PRDDIVARNCNAGSDDT 207
Query: 230 ED-YCHSEDVRGVSGASPLLAXXXXXX-XXXXXXXXXXXXXXEDSSYSY-STPALSTSSY 286
E+ +SED+R V+GASPLL EDSS +Y STPALSTSSY
Sbjct: 208 EEELSNSEDLRKVTGASPLLLKLKQKNWSRSSSRLLRANNRKEDSSCTYNSTPALSTSSY 267
Query: 287 NRYCGHRDPSTVGSWDGTTTSMNXXXXXXXXXXXLPGRQGCGIPCYWSKRTPKHRGACGR 346
N Y R+PSTVGSWDGTTTS+N LPGRQGCGIPCYW+K+ KHRG C
Sbjct: 268 NMY-AVRNPSTVGSWDGTTTSVNDGDDELDDNLDLPGRQGCGIPCYWTKKAMKHRGGCRS 326
Query: 347 CYSPSLSDTLRRKGSSMLCGSQTFYPNHRRSFSAS-NKRRISSRSAQGVLPLLTNSGDVR 405
C SPS SDTLRR GSS+LCGSQ+ Y H R S +K++I+ RSAQGVLPLL+ GD R
Sbjct: 327 CCSPSFSDTLRRTGSSILCGSQSVYRRHNRHSSGGYSKQKIACRSAQGVLPLLSYGGDGR 386
Query: 406 EGSSIGTGRSDDELSTNFGELDLEGLSRLDGRRWSTSCRSQEGLEIVALNGEGEDGSTPD 465
GSS+GTG SDDELSTN+GELDLE SRLDGRRWSTS RSQ+GLE VAL+GE E+GSTP+
Sbjct: 387 GGSSLGTGLSDDELSTNYGELDLEAQSRLDGRRWSTSYRSQDGLEAVALDGEEEEGSTPE 446
Query: 466 NSWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAA 525
SFSQKY+PMFF ELIGQ+IVVQSL+NAV R RIAPVYLFQGPRGTGKTSTARIF+AA
Sbjct: 447 TIRSFSQKYRPMFFEELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAA 506
Query: 526 LNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXXXXXX 585
LNCVA++E KPCGYC+EC DF+SGKS D E+DG NK+G DK RYLLK L
Sbjct: 507 LNCVATEEM-KPCGYCKECNDFMSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRNSS 565
Query: 586 RYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKI 645
Y VFV DECHLLPSKTWL LKFLE P Q+VVFIFIT+DL+NVPRTIQSRCQK+LF+K+
Sbjct: 566 MYKVFVIDECHLLPSKTWLSFLKFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFDKL 625
Query: 646 KDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNE 705
KD DIV+RL+KI++ E+LDV+ ALDLIAMNADGSLRDAETMLEQLSLLGKRITT+LVNE
Sbjct: 626 KDSDIVVRLKKIASDENLDVDLHALDLIAMNADGSLRDAETMLEQLSLLGKRITTALVNE 685
Query: 706 LVSLL 710
LV ++
Sbjct: 686 LVGVV 690
>AT1G14460.1 | Symbols: | AAA-type ATPase family protein |
chr1:4948962-4952750 REVERSE LENGTH=1116
Length = 1116
Score = 622 bits (1603), Expect = e-178, Method: Compositional matrix adjust.
Identities = 369/730 (50%), Positives = 448/730 (61%), Gaps = 89/730 (12%)
Query: 1 MRVSDPSKLHLKKELTQIRK-AARVLRDPGTTXXXXXXXXXXXXVAAWKDS-GSTRFT-- 56
+R+SDPSKLHLKKELT IRK A++ LRDPGTT ++WK S+RF
Sbjct: 4 LRISDPSKLHLKKELTHIRKVASKGLRDPGTT-------------SSWKSPLTSSRFVVE 50
Query: 57 --ATAN----PNSQLDSALPPSI------NDKDKRVFLYNWKNYKSSSEKSGVPKYNVXX 104
A+ N N+QLDS P S +K+K+VFLYNWK ++SSEK+
Sbjct: 51 PPASNNVEILSNNQLDSQFPSSRVFGNNGKEKEKKVFLYNWKTQRTSSEKT--------- 101
Query: 105 XXXXXXXXXXXXXXXXXXXXXXXXXXARNACDLKSDAGTRASIFLCGDANPVSKGTPAAR 164
ARN D + AS+ R
Sbjct: 102 -EGEDETSWIQASLNDDDDDDDDVSDARNGGDSCLEETRSASMI---------------R 145
Query: 165 RTTPMKKKSKKTNPHLDFLAAKHQHNRQTNLGRKLVSSNSKPLLEGRPSMPFFTRDDLVE 224
++ +KKKSK+ LD ++GRK S PS L
Sbjct: 146 KSGFIKKKSKE----LDL-----------SIGRK-----STAKARNFPSHHLHVASGLSV 185
Query: 225 HSDD---TEDYCHSEDVRGVSGASPLLAXXXXXXXXXXXXXXXXXXXXEDSSYS-YSTPA 280
D+ TED+ +SE+ + LL EDSS++ STPA
Sbjct: 186 VRDESDETEDFSNSENFPTKVSSPLLLKLKRKNWSRSSSKFLRGTSKREDSSHTCNSTPA 245
Query: 281 LSTSSYNRYCGHRDPSTVGSWDGTTTSMNXXXXXXXXXXXLPGRQGCGIPCYWSKRTPKH 340
LSTSSYN Y G R+PSTVGSW+ ++ GRQGCGIP YW+KR KH
Sbjct: 246 LSTSSYNMY-GIRNPSTVGSWEDGDDELD------DDNLDFKGRQGCGIPFYWTKRNLKH 298
Query: 341 RGACGRCYSPSLSDTLRRKGSSMLCGSQTFYPNHRRSFSASNKRRISSRSAQGVLPLLTN 400
RG C C SPS SDTLRRKGSS+LCGSQ+ Y HR S NK++++ RSA+GVLPLL
Sbjct: 299 RGGCRSCCSPSFSDTLRRKGSSILCGSQSVYRRHRHSSGRFNKQKLALRSAKGVLPLLKY 358
Query: 401 SGDVREGSSIGTGRSDDELSTNFGELDLEGLSRLDGRRWSTSCRSQEGLEIVALNGEGED 460
GD R GSSIG G SDD+LST+FGE+DLE SRLDGRRWS+ C+SQ+ E E
Sbjct: 359 GGDSRGGSSIGIGYSDDDLSTDFGEIDLEAQSRLDGRRWSSCCKSQD----GEREEEEEG 414
Query: 461 GSTPDNSWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTAR 520
GSTP++ S SQKYKPMFF ELIGQ+IVVQSL+NAV +GR+A VYLFQGPRGTGKTSTAR
Sbjct: 415 GSTPESIQSLSQKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTAR 474
Query: 521 IFAAALNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGX 580
I +AALNC E KPCGYC+EC+D++ GKS DL+E+D K G +K RYLLK+L
Sbjct: 475 ILSAALNCDVVTEEMKPCGYCKECSDYMLGKSRDLLELDAGKKNGAEKVRYLLKKLLTLA 534
Query: 581 XXXXXRYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKY 640
RY VFV DECHLLPS+TWL LLKFLE P Q+ VF+ IT+DLDNVPRTIQSRCQKY
Sbjct: 535 PQSSQRYKVFVIDECHLLPSRTWLSLLKFLENPLQKFVFVCITTDLDNVPRTIQSRCQKY 594
Query: 641 LFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITT 700
+FNK++DGDIV+RLRKI++ E+LDVE+ ALDLIA+NADGSLRDAETMLEQLSL+GKRIT
Sbjct: 595 IFNKVRDGDIVVRLRKIASDENLDVESQALDLIALNADGSLRDAETMLEQLSLMGKRITV 654
Query: 701 SLVNELVSLL 710
LVNELV ++
Sbjct: 655 DLVNELVGVV 664
>AT4G24790.2 | Symbols: | AAA-type ATPase family protein |
chr4:12778222-12781345 FORWARD LENGTH=857
Length = 857
Score = 248 bits (633), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 127/260 (48%), Positives = 170/260 (65%), Gaps = 6/260 (2%)
Query: 455 NGEGE-DGSTPDN---SWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGP 510
NG GE D TP + S S SQK++P F EL+GQ +VV+ L++ + RGRI VYLF GP
Sbjct: 222 NGNGESDVVTPSHEVLSRSLSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGP 281
Query: 511 RGTGKTSTARIFAAALNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKAR 570
RGTGKTST++IFAAALNC++ ++PCG C EC + SG+ D++E D R
Sbjct: 282 RGTGKTSTSKIFAAALNCLSQAAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLR 341
Query: 571 YLLKRLSIGXXXXXXRYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVP 630
L+K S+ R+ VF+ DEC LL +TW LL L+ Q VFI +TS+L+ +P
Sbjct: 342 SLIKSASL--PPVSSRFKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLP 399
Query: 631 RTIQSRCQKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQ 690
R + SR QKY F+K+ D DI +L KI +E +D + A+D IA +DGSLRDAE ML+Q
Sbjct: 400 RNVLSRSQKYHFSKVCDADISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQ 459
Query: 691 LSLLGKRITTSLVNELVSLL 710
LSLLGKRITTSL +L+ ++
Sbjct: 460 LSLLGKRITTSLAYKLIGVV 479
>AT4G24790.1 | Symbols: | AAA-type ATPase family protein |
chr4:12778222-12781345 FORWARD LENGTH=857
Length = 857
Score = 248 bits (633), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 127/260 (48%), Positives = 170/260 (65%), Gaps = 6/260 (2%)
Query: 455 NGEGE-DGSTPDN---SWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGP 510
NG GE D TP + S S SQK++P F EL+GQ +VV+ L++ + RGRI VYLF GP
Sbjct: 222 NGNGESDVVTPSHEVLSRSLSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGP 281
Query: 511 RGTGKTSTARIFAAALNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKAR 570
RGTGKTST++IFAAALNC++ ++PCG C EC + SG+ D++E D R
Sbjct: 282 RGTGKTSTSKIFAAALNCLSQAAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLR 341
Query: 571 YLLKRLSIGXXXXXXRYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVP 630
L+K S+ R+ VF+ DEC LL +TW LL L+ Q VFI +TS+L+ +P
Sbjct: 342 SLIKSASL--PPVSSRFKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLP 399
Query: 631 RTIQSRCQKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQ 690
R + SR QKY F+K+ D DI +L KI +E +D + A+D IA +DGSLRDAE ML+Q
Sbjct: 400 RNVLSRSQKYHFSKVCDADISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQ 459
Query: 691 LSLLGKRITTSLVNELVSLL 710
LSLLGKRITTSL +L+ ++
Sbjct: 460 LSLLGKRITTSLAYKLIGVV 479
>AT5G45720.2 | Symbols: | AAA-type ATPase family protein |
chr5:18543338-18546629 REVERSE LENGTH=956
Length = 956
Score = 229 bits (584), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 147/392 (37%), Positives = 213/392 (54%), Gaps = 60/392 (15%)
Query: 327 CGIPCYWSKRTPKHRG-----ACGRCYSPSLSDTLRRKGSSMLCGSQTFYPNHRRSFSAS 381
CGIP WS+ HRG GR S +SD+ RKG + G+ F
Sbjct: 240 CGIPFNWSR--IHHRGKTFLDIAGRSLSCGISDSKGRKGEA---GTPMFSD--------- 285
Query: 382 NKRRISSRSAQGVLPLLTNSGDVREGSSIGTGRSDDELSTNF-GELDLEGLSRLDGRRWS 440
SS S + LPLL +S D ++E ++ GEL + + L
Sbjct: 286 -----SSSSDREALPLLVDSAD------------NEEWVHDYSGELGIFADNLL------ 322
Query: 441 TSCRSQEGLEIVALNGEGEDGSTPDNSW--SFSQKYKPMFFGELIGQNIVVQSLINAVSR 498
+ G + V G+ S + W SF+QKY P F +L+GQN+VVQ+L NA+++
Sbjct: 323 -----KNGKDSVI----GKKSSRKNTRWHQSFTQKYAPRTFRDLLGQNLVVQALSNAIAK 373
Query: 499 GRIAPVYLFQGPRGTGKTSTARIFAAALNCVASDESNKPCGYCRECTDFISGKSSDLVEV 558
R+ +Y+F GP GTGKTS AR+FA ALNC ++++S KPCG C C + GK+ + E+
Sbjct: 374 RRVGLLYVFHGPNGTGKTSCARVFARALNCHSTEQS-KPCGVCSSCVSYDDGKNRYIREM 432
Query: 559 DGTNKRGIDKARYLLKRLSIGXXXXXXRYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVV 618
+ LL + +I + V +FD+C + + W L K ++ P+RVV
Sbjct: 433 GPVKSFDFEN---LLDKTNI--RQQQKQQLVLIFDDCDTMSTDCWNTLSKIVDRAPRRVV 487
Query: 619 FIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNAD 678
F+ + S LD +P I SRCQK+ F K+KD DI+ L+ I+++E +D++ DAL L+A +D
Sbjct: 488 FVLVCSSLDVLPHIIVSRCQKFFFPKLKDVDIIDSLQLIASKEEIDIDKDALKLVASRSD 547
Query: 679 GSLRDAETMLEQLSLLGKRITTSLVNELVSLL 710
GSLRDAE LEQLSLLG RI+ LV E+V L+
Sbjct: 548 GSLRDAEMTLEQLSLLGTRISVPLVQEMVGLI 579
>AT5G45720.1 | Symbols: | AAA-type ATPase family protein |
chr5:18543338-18546629 REVERSE LENGTH=966
Length = 966
Score = 229 bits (584), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 147/392 (37%), Positives = 213/392 (54%), Gaps = 60/392 (15%)
Query: 327 CGIPCYWSKRTPKHRG-----ACGRCYSPSLSDTLRRKGSSMLCGSQTFYPNHRRSFSAS 381
CGIP WS+ HRG GR S +SD+ RKG + G+ F
Sbjct: 240 CGIPFNWSR--IHHRGKTFLDIAGRSLSCGISDSKGRKGEA---GTPMFSD--------- 285
Query: 382 NKRRISSRSAQGVLPLLTNSGDVREGSSIGTGRSDDELSTNF-GELDLEGLSRLDGRRWS 440
SS S + LPLL +S D ++E ++ GEL + + L
Sbjct: 286 -----SSSSDREALPLLVDSAD------------NEEWVHDYSGELGIFADNLL------ 322
Query: 441 TSCRSQEGLEIVALNGEGEDGSTPDNSW--SFSQKYKPMFFGELIGQNIVVQSLINAVSR 498
+ G + V G+ S + W SF+QKY P F +L+GQN+VVQ+L NA+++
Sbjct: 323 -----KNGKDSVI----GKKSSRKNTRWHQSFTQKYAPRTFRDLLGQNLVVQALSNAIAK 373
Query: 499 GRIAPVYLFQGPRGTGKTSTARIFAAALNCVASDESNKPCGYCRECTDFISGKSSDLVEV 558
R+ +Y+F GP GTGKTS AR+FA ALNC ++++S KPCG C C + GK+ + E+
Sbjct: 374 RRVGLLYVFHGPNGTGKTSCARVFARALNCHSTEQS-KPCGVCSSCVSYDDGKNRYIREM 432
Query: 559 DGTNKRGIDKARYLLKRLSIGXXXXXXRYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVV 618
+ LL + +I + V +FD+C + + W L K ++ P+RVV
Sbjct: 433 GPVKSFDFEN---LLDKTNI--RQQQKQQLVLIFDDCDTMSTDCWNTLSKIVDRAPRRVV 487
Query: 619 FIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNAD 678
F+ + S LD +P I SRCQK+ F K+KD DI+ L+ I+++E +D++ DAL L+A +D
Sbjct: 488 FVLVCSSLDVLPHIIVSRCQKFFFPKLKDVDIIDSLQLIASKEEIDIDKDALKLVASRSD 547
Query: 679 GSLRDAETMLEQLSLLGKRITTSLVNELVSLL 710
GSLRDAE LEQLSLLG RI+ LV E+V L+
Sbjct: 548 GSLRDAEMTLEQLSLLGTRISVPLVQEMVGLI 579
>AT4G18820.1 | Symbols: | AAA-type ATPase family protein |
chr4:10330371-10334090 FORWARD LENGTH=1097
Length = 1097
Score = 218 bits (554), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/243 (47%), Positives = 153/243 (62%), Gaps = 5/243 (2%)
Query: 469 SFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNC 528
S ++KY P F +L+GQN+VVQ+L NAV+R ++ +Y+F GP GTGKTS ARIFA ALNC
Sbjct: 432 SLTEKYTPKTFRDLLGQNLVVQALSNAVARRKLGLLYVFHGPNGTGKTSCARIFARALNC 491
Query: 529 VASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXXXXXXRYT 588
S E KPCG C C GKS ++ EV +K ++ L
Sbjct: 492 -HSMEQPKPCGTCSSCVSHDMGKSWNIREVGPVGNYDFEK---IMDLLDGNVMVSSQSPR 547
Query: 589 VFVFDECHLLPSKTWLGLLKFLEEP-PQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKD 647
VF+FD+C L S W L K ++ P+ VVFI + S LD +P I SRCQK+ F K+KD
Sbjct: 548 VFIFDDCDTLSSDCWNALSKVVDRAAPRHVVFILVCSSLDVLPHVIISRCQKFFFPKLKD 607
Query: 648 GDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELV 707
DIV L+ I+++E ++++ DAL LIA +DGSLRDAE LEQLSLLG+RI+ LV ELV
Sbjct: 608 ADIVYSLQWIASKEEIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 667
Query: 708 SLL 710
L+
Sbjct: 668 GLV 670
>AT1G21690.1 | Symbols: EMB1968, RFC4 | ATPase family associated
with various cellular activities (AAA) |
chr1:7615675-7618362 FORWARD LENGTH=339
Length = 339
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 108/249 (43%), Gaps = 30/249 (12%)
Query: 466 NSWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAA 525
+S + +KY+P ++ Q VV+ L N + P LF GP GTGKT+TA A
Sbjct: 7 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTAD-CPHMLFYGPPGTGKTTTALAIAHQ 65
Query: 526 LNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXXXXXX 585
L P Y S ++E++ ++ RGI+ R +K +
Sbjct: 66 LF--------GPELY-----------KSRVLELNASDDRGINVVRTKIKDFAAVAVGSNH 106
Query: 586 R--------YTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRC 637
R + + + DE + L + +E + F FI + + + + SRC
Sbjct: 107 RQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 166
Query: 638 QKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLS-LLGK 696
K+ F + + + R+ I +E L ++ +AL ++ + G LR A T L+ + L G
Sbjct: 167 AKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGS 226
Query: 697 RIT-TSLVN 704
IT T L+N
Sbjct: 227 TITSTDLLN 235
>AT1G21690.3 | Symbols: EMB1968 | ATPase family associated with
various cellular activities (AAA) |
chr1:7615675-7618421 FORWARD LENGTH=341
Length = 341
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 108/249 (43%), Gaps = 30/249 (12%)
Query: 466 NSWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAA 525
+S + +KY+P ++ Q VV+ L N + P LF GP GTGKT+TA A
Sbjct: 7 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTAD-CPHMLFYGPPGTGKTTTALAIAHQ 65
Query: 526 LNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXXXXXX 585
L P Y S ++E++ ++ RGI+ R +K +
Sbjct: 66 LF--------GPELY-----------KSRVLELNASDDRGINVVRTKIKDFAAVAVGSNH 106
Query: 586 R--------YTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRC 637
R + + + DE + L + +E + F FI + + + + SRC
Sbjct: 107 RQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 166
Query: 638 QKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLS-LLGK 696
K+ F + + + R+ I +E L ++ +AL ++ + G LR A T L+ + L G
Sbjct: 167 AKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGS 226
Query: 697 RIT-TSLVN 704
IT T L+N
Sbjct: 227 TITSTDLLN 235
>AT1G21690.4 | Symbols: EMB1968 | ATPase family associated with
various cellular activities (AAA) |
chr1:7615675-7618362 FORWARD LENGTH=332
Length = 332
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 105/249 (42%), Gaps = 37/249 (14%)
Query: 466 NSWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAA 525
+S + +KY+P ++ Q VV+ L N + P LF GP GTGKT+TA A
Sbjct: 7 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTAD-CPHMLFYGPPGTGKTTTALAIAHQ 65
Query: 526 LNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXXXXXX 585
L V +E++ ++ RGI+ R +K +
Sbjct: 66 LFGV--------------------------LELNASDDRGINVVRTKIKDFAAVAVGSNH 99
Query: 586 R--------YTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRC 637
R + + + DE + L + +E + F FI + + + + SRC
Sbjct: 100 RQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 159
Query: 638 QKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLS-LLGK 696
K+ F + + + R+ I +E L ++ +AL ++ + G LR A T L+ + L G
Sbjct: 160 AKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGS 219
Query: 697 RIT-TSLVN 704
IT T L+N
Sbjct: 220 TITSTDLLN 228
>AT1G21690.2 | Symbols: EMB1968, RFC4 | ATPase family associated
with various cellular activities (AAA) |
chr1:7615675-7618362 FORWARD LENGTH=327
Length = 327
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 29/215 (13%)
Query: 500 RIAPVYLFQGPRGTGKTSTARIFAAALNCVASDESNKPCGYCRECTDFISGKSSDLVEVD 559
+ P LF GP GTGKT+TA A L P Y S ++E++
Sbjct: 28 EVCPHMLFYGPPGTGKTTTALAIAHQLF--------GPELY-----------KSRVLELN 68
Query: 560 GTNKRGIDKARYLLKRLSIGXXXXXXR--------YTVFVFDECHLLPSKTWLGLLKFLE 611
++ RGI+ R +K + R + + + DE + L + +E
Sbjct: 69 ASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTME 128
Query: 612 EPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVIRLRKISTQESLDVETDALD 671
+ F FI + + + + SRC K+ F + + + R+ I +E L ++ +AL
Sbjct: 129 TYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALS 188
Query: 672 LIAMNADGSLRDAETMLEQLS-LLGKRIT-TSLVN 704
++ + G LR A T L+ + L G IT T L+N
Sbjct: 189 TLSSISQGDLRRAITYLQSATRLFGSTITSTDLLN 223
>AT1G77470.1 | Symbols: RFC3, RFC5 | replication factor C subunit 3
| chr1:29112194-29114323 REVERSE LENGTH=369
Length = 369
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 105/255 (41%), Gaps = 28/255 (10%)
Query: 447 EGLEIVALNGEGEDGSTPDNSWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYL 506
+G ++V + +TP W +KY+P ++ ++ ++ + ++ P L
Sbjct: 23 KGKDVVGFGPPPQSKATP---WV--EKYRPQSLDDVAAHRDIIDTIDRLTNENKL-PHLL 76
Query: 507 FQGPRGTGKTSTARIFAAALNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGI 566
GP GTGKTST I A A N ++E++ ++ RGI
Sbjct: 77 LYGPPGTGKTST--ILAVARKLYGPKYRNM------------------ILELNASDDRGI 116
Query: 567 DKARYLLKRLSIGXXXXXXRYTV--FVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITS 624
D R ++ + + +V + DE + L + +E+ + F I +
Sbjct: 117 DVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGN 176
Query: 625 DLDNVPRTIQSRCQKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDA 684
++ + +QSRC ++ F + + RL+ + E L V L + ++G +R A
Sbjct: 177 HVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSDCGLAALVRLSNGDMRKA 236
Query: 685 ETMLEQLSLLGKRIT 699
+L+ + K IT
Sbjct: 237 LNILQSTHMASKEIT 251
>AT1G63160.1 | Symbols: RFC2 | replication factor C 2 |
chr1:23422068-23423771 REVERSE LENGTH=333
Length = 333
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 22/219 (10%)
Query: 472 QKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVAS 531
+KY+P +++G V L ++R P + GP GTGKT++ A L
Sbjct: 19 EKYRPSKVVDIVGNEDAVSRL-QVIARDGNMPNLILSGPPGTGKTTSILALAHELLGTNY 77
Query: 532 DESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXXXXX-XRYTVF 590
E+ ++E++ ++ RGID R +K + R+ V
Sbjct: 78 KEA--------------------VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVV 117
Query: 591 VFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDI 650
+ DE + S L + +E F + + IQSRC F+++ D I
Sbjct: 118 ILDEADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQI 177
Query: 651 VIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLE 689
+ RL + E + + L+ I ADG +R A L+
Sbjct: 178 LGRLLVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQ 216