Miyakogusa Predicted Gene
- Lj4g3v0037530.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0037530.1 Non Chatacterized Hit- tr|I1KNQ8|I1KNQ8_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,77.13,0,seg,NULL;
DNA_pol3_delta2,NULL; DNA_pol3_gamma3,DNA polymerase III, gamma
subunit, domain III; dnaX_,CUFF.46552.1
(1250 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G02480.1 | Symbols: STI | AAA-type ATPase family protein | ch... 1152 0.0
AT1G14460.1 | Symbols: | AAA-type ATPase family protein | chr1:... 941 0.0
AT5G45720.1 | Symbols: | AAA-type ATPase family protein | chr5:... 351 2e-96
AT5G45720.2 | Symbols: | AAA-type ATPase family protein | chr5:... 347 2e-95
AT4G24790.2 | Symbols: | AAA-type ATPase family protein | chr4:... 347 4e-95
AT4G24790.1 | Symbols: | AAA-type ATPase family protein | chr4:... 347 4e-95
AT4G18820.1 | Symbols: | AAA-type ATPase family protein | chr4:... 328 1e-89
AT1G21690.1 | Symbols: EMB1968, RFC4 | ATPase family associated ... 72 2e-12
AT1G21690.3 | Symbols: EMB1968 | ATPase family associated with v... 72 3e-12
AT1G21690.4 | Symbols: EMB1968 | ATPase family associated with v... 71 5e-12
AT1G21690.2 | Symbols: EMB1968, RFC4 | ATPase family associated ... 66 2e-10
AT1G77470.1 | Symbols: RFC3, RFC5 | replication factor C subunit... 57 9e-08
AT1G63160.1 | Symbols: RFC2 | replication factor C 2 | chr1:2342... 55 3e-07
>AT2G02480.1 | Symbols: STI | AAA-type ATPase family protein |
chr2:661093-665337 FORWARD LENGTH=1218
Length = 1218
Score = 1152 bits (2980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 689/1281 (53%), Positives = 821/1281 (64%), Gaps = 102/1281 (7%)
Query: 1 MSEMRVSDPSKLHLKKELTQIRKAARVLRDPGTTXXXXXXXXXXXXVAAWKDSGSTRFTA 60
MS RVSD SKLHLKKELTQIRKA RVLRDPGTT VA + S
Sbjct: 1 MSGSRVSDLSKLHLKKELTQIRKAGRVLRDPGTTSSWKSPLDSSRSVALLETPASR---- 56
Query: 61 TANPNSQLDSALPPSIN--DKDKRVFLYNWKNYKSSSEKSGVPKYNVXXXXXXXXXXXXX 118
+SQ S N K+K+VFLYNWK KSSSEKSG+ K
Sbjct: 57 NGGSSSQFPIRGESSTNRRGKEKKVFLYNWKTQKSSSEKSGLAK---NGKEEEEEEEDAS 113
Query: 119 XXXXXXXXXXXXXXXARNACDLKSDAGTRASI-FLCGDANPVSKGTPAARRTT----PMK 173
ARN D AS+ F C D N S+G R++ K
Sbjct: 114 SWTQASVNDDDDVSDARNGGDSYRREIQSASMGFRCRDTNLASQGVSKMRKSNVGSCKKK 173
Query: 174 KKSKKTNPHLDFLAAKHQHNRQTNLGRKLVSSNSKPLLEGRPSMPFFTRDDLVEH----- 228
K K ++ LD L+ K+Q RDD+V
Sbjct: 174 SKKKISSSRLDCLS-KYQ-----------------------------PRDDIVARNCNAG 203
Query: 229 SDDTED-YCHSEDVRGVSGASPLLAXXXXXX-XXXXXXXXXXXXXXEDSSYSY-STPALS 285
SDDTE+ +SED+R V+GASPLL EDSS +Y STPALS
Sbjct: 204 SDDTEEELSNSEDLRKVTGASPLLLKLKQKNWSRSSSRLLRANNRKEDSSCTYNSTPALS 263
Query: 286 TSSYNRYCGHRDPSTVGSWDGTTTSMNXXXXXXXXXXXLPGRQGCGIPCYWSKRTPKHRG 345
TSSYN Y R+PSTVGSWDGTTTS+N LPGRQGCGIPCYW+K+ KHRG
Sbjct: 264 TSSYNMY-AVRNPSTVGSWDGTTTSVNDGDDELDDNLDLPGRQGCGIPCYWTKKAMKHRG 322
Query: 346 ACGRCYSPSLSDTLRRKGSSMLCGSQTFYPNHRRSFSAS-NKRRISSRSAQGVLPLLTNS 404
C C SPS SDTLRR GSS+LCGSQ+ Y H R S +K++I+ RSAQGVLPLL+
Sbjct: 323 GCRSCCSPSFSDTLRRTGSSILCGSQSVYRRHNRHSSGGYSKQKIACRSAQGVLPLLSYG 382
Query: 405 GDVREGSSIGTGRSDDELSTNFGELDLEGLSRLDGRRWSTSCRSQEGLEIVALNGEGEDG 464
GD R GSS+GTG SDDELSTN+GELDLE SRLDGRRWSTS RSQ+GLE VAL+GE E+G
Sbjct: 383 GDGRGGSSLGTGLSDDELSTNYGELDLEAQSRLDGRRWSTSYRSQDGLEAVALDGEEEEG 442
Query: 465 STPDNSWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARI 524
STP+ SFSQKY+PMFF ELIGQ+IVVQSL+NAV R RIAPVYLFQGPRGTGKTSTARI
Sbjct: 443 STPETIRSFSQKYRPMFFEELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARI 502
Query: 525 FAAALNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXX 584
F+AALNCVA++E KPCGYC+EC DF+SGKS D E+DG NK+G DK RYLLK L
Sbjct: 503 FSAALNCVATEEM-KPCGYCKECNDFMSGKSKDFWELDGANKKGADKVRYLLKNLPTILP 561
Query: 585 XXXXRYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYL 644
Y VFV DECHLLPSKTWL LKFLE P Q+VVFIFIT+DL+NVPRTIQSRCQK+L
Sbjct: 562 RNSSMYKVFVIDECHLLPSKTWLSFLKFLENPLQKVVFIFITTDLENVPRTIQSRCQKFL 621
Query: 645 FNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTS 704
F+K+KD DIV+RL+KI++ E+LDV+ ALDLIAMNADGSLRDAETMLEQLSLLGKRITT+
Sbjct: 622 FDKLKDSDIVVRLKKIASDENLDVDLHALDLIAMNADGSLRDAETMLEQLSLLGKRITTA 681
Query: 705 LVNELVGVVSDEKLLELLELAMSSDNAETVKRARELMDSGVDPMVLMSQLAGLIMDIIAG 764
LVNELVGVVSDEKLLELLELA+SSD AETVKRAREL+D G DP+VLMSQLA LIMDIIAG
Sbjct: 682 LVNELVGVVSDEKLLELLELALSSDTAETVKRARELLDLGADPIVLMSQLASLIMDIIAG 741
Query: 765 SYTVVDVKPDDSHFGGRSLNESELERLKNALKLLSEAEKQLRTSSERTTWFTATLLQLGS 824
+Y VVD K ++ F GR+L E+++E LK+ALKLLSEAEKQLR S++R+TWFTATLLQLGS
Sbjct: 742 TYKVVDEKYSNAFFDGRNLTEADMEGLKHALKLLSEAEKQLRVSNDRSTWFTATLLQLGS 801
Query: 825 IPSPDLXXXXXXXXXXXXXXXEDDPSSASRDVTSFKQK-------SDLSPASHLKAANGS 877
+PSP +DDP+S SR+V ++KQ+ SPAS +K NG+
Sbjct: 802 MPSPG-TTHTGSSRRQSSRATDDDPASVSREVMAYKQRIGGLHFSKSASPASVIK-RNGN 859
Query: 878 SVHQKVISSRI---DGFIKRPKXXXXXXXXXXXXXDDLIVGNAMFRCIDSGQLGDIWAHC 934
H+ SR+ + + ++ I M S +L DIW C
Sbjct: 860 HSHEAKPFSRVIDNNCYKSSSSSQMIESEGSIASHENSIASTMMLNQRSSEKLNDIWRKC 919
Query: 935 IERCHSKTLRQLLHNHGKLVSLCEVEGVLAAYVAFGDGDIKLRAERFLRSITNSMEMVLR 994
IERCHSKTLRQLL+ HGKL+S+ EVEG+L AY+AFG+ DIKLRAERFL SITNS+EMVLR
Sbjct: 920 IERCHSKTLRQLLYTHGKLISISEVEGILVAYIAFGENDIKLRAERFLSSITNSIEMVLR 979
Query: 995 RNVEVRIIHLPDEGEIQINPPGENQAESKMASAKEQRRGHMNGTESYSNLPPVLDGKLQS 1054
R+VEVRII LP E E+ + P + E S GH+N +
Sbjct: 980 RSVEVRIILLP-ETELLVVPHQTRKPEMTNKS------GHLN--------------NIAG 1018
Query: 1055 ATSSSDIRAEGNVTRERRQDNPMQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQ 1114
+ +D+ +V E R PMQRIESIIREQRLETAWLQ +K +PGS+ R++PE+NQ
Sbjct: 1019 LNAETDVEVGSSV--ESRSKLPMQRIESIIREQRLETAWLQTADKDTPGSIIRVKPERNQ 1076
Query: 1115 VLPQDGIY-CVDPKEPMDSTRFSSHQHWEDDLNNSLKALSIKNGRVLQKDQISKRADHYP 1173
+LPQ+ Y + + S+ ++HQ W D+LNN +K L I + LQ++ R H P
Sbjct: 1077 ILPQEDTYRQTNVASAISSSGLTTHQ-WVDELNNEVKLLKIGDNGELQENLTGTRGQHCP 1135
Query: 1174 MSPSLLHDNSLATISGKDNL-GYESSSRPGGCGFL-CWNKSKTKRVVK---VKGTPVRAR 1228
+SPSLLHD + + KDNL GYES S GC L CWN KT+R K VKGTPVR+R
Sbjct: 1136 LSPSLLHDTNFG--NNKDNLGGYESGSGRVGCNILFCWNTKKTQRRSKSKQVKGTPVRSR 1193
Query: 1229 --KAGCLTLFGECGGKTKKKE 1247
+ +LF C K +K E
Sbjct: 1194 RNRKSRFSLFNGC-AKPRKAE 1213
>AT1G14460.1 | Symbols: | AAA-type ATPase family protein |
chr1:4948962-4952750 REVERSE LENGTH=1116
Length = 1116
Score = 941 bits (2431), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/1005 (52%), Positives = 653/1005 (64%), Gaps = 107/1005 (10%)
Query: 227 EHSDDTEDYCHSEDVRGVSGASPLLAXXXXXXXXXXXXXXXXXXXXEDSSYSY-STPALS 285
+ SD+TED+ +SE+ + LL EDSS++ STPALS
Sbjct: 188 DESDETEDFSNSENFPTKVSSPLLLKLKRKNWSRSSSKFLRGTSKREDSSHTCNSTPALS 247
Query: 286 TSSYNRYCGHRDPSTVGSWDGTTTSMNXXXXXXXXXXXLPGRQGCGIPCYWSKRTPKHRG 345
TSSYN Y G R+PSTVGSW+ ++ GRQGCGIP YW+KR KHRG
Sbjct: 248 TSSYNMY-GIRNPSTVGSWEDGDDELDDDNLD------FKGRQGCGIPFYWTKRNLKHRG 300
Query: 346 ACGRCYSPSLSDTLRRKGSSMLCGSQTFYPNHRRSFSASNKRRISSRSAQGVLPLLTNSG 405
C C SPS SDTLRRKGSS+LCGSQ+ Y HR S NK++++ RSA+GVLPLL G
Sbjct: 301 GCRSCCSPSFSDTLRRKGSSILCGSQSVYRRHRHSSGRFNKQKLALRSAKGVLPLLKYGG 360
Query: 406 DVREGSSIGTGRSDDELSTNFGELDLEGLSRLDGRRWSTSCRSQEGLEIVALNGEGEDGS 465
D R GSSIG G SDD+LST+FGE+DLE SRLDGRRWS+ C+SQ+ E E GS
Sbjct: 361 DSRGGSSIGIGYSDDDLSTDFGEIDLEAQSRLDGRRWSSCCKSQD----GEREEEEEGGS 416
Query: 466 TPDNSWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIF 525
TP++ S SQKYKPMFF ELIGQ+IVVQSL+NAV +GR+A VYLFQGPRGTGKTSTARI
Sbjct: 417 TPESIQSLSQKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARIL 476
Query: 526 AAALNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXXX 585
+AALNC E KPCGYC+EC+D++ GKS DL+E+D K G +K RYLLK+L
Sbjct: 477 SAALNCDVVTEEMKPCGYCKECSDYMLGKSRDLLELDAGKKNGAEKVRYLLKKLLTLAPQ 536
Query: 586 XXXRYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLF 645
RY VFV DECHLLPS+TWL LLKFLE P Q+ VF+ IT+DLDNVPRTIQSRCQKY+F
Sbjct: 537 SSQRYKVFVIDECHLLPSRTWLSLLKFLENPLQKFVFVCITTDLDNVPRTIQSRCQKYIF 596
Query: 646 NKIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSL 705
NK++DGDIV+RLRKI++ E+LDVE+ ALDLIA+NADGSLRDAETMLEQLSL+GKRIT L
Sbjct: 597 NKVRDGDIVVRLRKIASDENLDVESQALDLIALNADGSLRDAETMLEQLSLMGKRITVDL 656
Query: 706 VNELVGVVSDEKLLELLELAMSSDNAETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGS 765
VNELVGVVSD+KLLELLELA+SSD AETVK+AREL+D G DP+++MSQLA LIMDIIAG+
Sbjct: 657 VNELVGVVSDDKLLELLELALSSDTAETVKKARELLDLGADPILMMSQLASLIMDIIAGA 716
Query: 766 YTVVDVKPDDSHFGGRSLNESELERLKNALKLLSEAEKQLRTSSERTTWFTATLLQLGSI 825
Y +D K ++ R+L E++LERLK+ALKLLSEAEKQLR S++R+TWF ATLLQLGS+
Sbjct: 717 YKALDEKYSEAFLDRRNLTEADLERLKHALKLLSEAEKQLRVSTDRSTWFIATLLQLGSM 776
Query: 826 PSPDLXXXXXXXXXXXXXXXEDDPSSASRDVTSFKQKSDL------SPASHLKAANGSSV 879
PSP E S SR+V ++KQ+S L SP S K+ N
Sbjct: 777 PSPGTTHTGSSRRQSSRATEE----SISREVIAYKQRSGLQCSNTASPTSIRKSGNLVRE 832
Query: 880 HQKVISSRIDGFIKRPKXXXXXXXXXXXXXDDLIVGNAMFRCIDSGQLGDIWAHCIERCH 939
+ SS DD C +S +L DIW C++RCH
Sbjct: 833 VKLSSSS----------SEVLESDTSMASHDDTTASTMTLTCRNSEKLNDIWIKCVDRCH 882
Query: 940 SKTLRQLLHNHGKLVSLCEVEGVLAAYVAFGDGDIKLRAERFLRSITNSMEMVLRRNVEV 999
SKTL+QLL+ HGKL+S+ EVEG+L AY+AFG+G+IK RAERF+ SITNS+EMVLRRNVEV
Sbjct: 883 SKTLKQLLYAHGKLLSISEVEGILVAYIAFGEGEIKARAERFVSSITNSIEMVLRRNVEV 942
Query: 1000 RIIHLPDEGEIQINPPGENQAESKMASAKEQRRGHMNGTESYSNLPPVLDGKLQSATSSS 1059
RII L +E+++ ++K+ R Q A ++S
Sbjct: 943 RIILL---------------SETELLNSKQTR---------------------QIAVTTS 966
Query: 1060 DIRAEGNVTRERRQDNPMQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQD 1119
GN + PM+RIE+II+EQRLET WLQ +PGS RL+PE+NQ+LPQ+
Sbjct: 967 SYTESGN-------EIPMKRIEAIIQEQRLETEWLQK----TPGSQGRLKPERNQILPQE 1015
Query: 1120 GIYCVDPKEPMDSTRFSSHQHWEDDLNNSLKALSIKNGRVLQKDQISKRADHYPMSPSLL 1179
N +K L I Q++Q KR +H P+SPSLL
Sbjct: 1016 D-------------------------TNGVKVLKICEMGEFQENQSGKRMEHCPVSPSLL 1050
Query: 1180 HDNSLATISGKDNLGYESSSRPGGCGFL-CWNKSKTKRVVKVKGT 1223
H+++ + KDNLGYES S G C L CWN K+ R K+KGT
Sbjct: 1051 HNSNFT--NNKDNLGYESESGRGVCSLLFCWNTQKSPRRTKIKGT 1093
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 69/114 (60%), Gaps = 29/114 (25%)
Query: 1 MSEMRVSDPSKLHLKKELTQIRK-AARVLRDPGTTXXXXXXXXXXXXVAAWKDS-GSTRF 58
MS +R+SDPSKLHLKKELT IRK A++ LRDPGTT ++WK S+RF
Sbjct: 1 MSGLRISDPSKLHLKKELTHIRKVASKGLRDPGTT-------------SSWKSPLTSSRF 47
Query: 59 T----ATAN----PNSQLDSALPPSI------NDKDKRVFLYNWKNYKSSSEKS 98
A+ N N+QLDS P S +K+K+VFLYNWK ++SSEK+
Sbjct: 48 VVEPPASNNVEILSNNQLDSQFPSSRVFGNNGKEKEKKVFLYNWKTQRTSSEKT 101
>AT5G45720.1 | Symbols: | AAA-type ATPase family protein |
chr5:18543338-18546629 REVERSE LENGTH=966
Length = 966
Score = 351 bits (900), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 240/674 (35%), Positives = 346/674 (51%), Gaps = 117/674 (17%)
Query: 330 CGIPCYWSKRTPKHRG-----ACGRCYSPSLSDTLRRKGSSMLCGSQTFYPNHRRSFSAS 384
CGIP WS+ HRG GR S +SD+ RKG + G+ F
Sbjct: 240 CGIPFNWSR--IHHRGKTFLDIAGRSLSCGISDSKGRKGEA---GTPMFSD--------- 285
Query: 385 NKRRISSRSAQGVLPLLTNSGDVREGSSIGTGRSDDELSTNF-GELDLEGLSRLDGRRWS 443
SS S + LPLL +S D ++E ++ GEL + + L
Sbjct: 286 -----SSSSDREALPLLVDSAD------------NEEWVHDYSGELGIFADNLL------ 322
Query: 444 TSCRSQEGLEIVALNGEGEDGSTPDNSW--SFSQKYKPMFFGELIGQNIVVQSLINAVSR 501
+ G + V G+ S + W SF+QKY P F +L+GQN+VVQ+L NA+++
Sbjct: 323 -----KNGKDSVI----GKKSSRKNTRWHQSFTQKYAPRTFRDLLGQNLVVQALSNAIAK 373
Query: 502 GRIAPVYLFQGPRGTGKTSTARIFAAALNCVASDESNKPCGYCRECTDFISGKSSDLVEV 561
R+ +Y+F GP GTGKTS AR+FA ALNC ++++S KPCG C C + GK+ + E+
Sbjct: 374 RRVGLLYVFHGPNGTGKTSCARVFARALNCHSTEQS-KPCGVCSSCVSYDDGKNRYIREM 432
Query: 562 DGTNKRGIDKARYLLKRLSIGXXXXXXRYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVV 621
+ LL + +I + V +FD+C + + W L K ++ P+RVV
Sbjct: 433 GPVKSFDFEN---LLDKTNI--RQQQKQQLVLIFDDCDTMSTDCWNTLSKIVDRAPRRVV 487
Query: 622 FIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNAD 681
F+ + S LD +P I SRCQK+ F K+KD DI+ L+ I+++E +D++ DAL L+A +D
Sbjct: 488 FVLVCSSLDVLPHIIVSRCQKFFFPKLKDVDIIDSLQLIASKEEIDIDKDALKLVASRSD 547
Query: 682 GSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDNAETVKRARELM 741
GSLRDAE LEQLSLLG RI+ LV E+VG++SDEKL++LL+LA+S+D TVK R +M
Sbjct: 548 GSLRDAEMTLEQLSLLGTRISVPLVQEMVGLISDEKLVDLLDLALSADTVNTVKNLRIIM 607
Query: 742 DSGVDPMVLMSQLAGLIMDIIAGSYTVVDVKPDDSHFGGRSLNESELERLKNALKLLSEA 801
++G++P+ LMSQLA +I DI+AGSY + F + L++ ++E+LK ALK LSE+
Sbjct: 608 ETGLEPLALMSQLATVITDILAGSYDFTKDQCKRKFFRRQPLSKEDMEKLKQALKTLSES 667
Query: 802 EKQLRTSSERTTWFTATLLQLGSIPSPDLXXXXXXXXXXXXXXXEDDPSSASRDVTSFKQ 861
EKQLR S+++ TW TA LLQL +PD P S+S D SF
Sbjct: 668 EKQLRVSNDKLTWLTAALLQL----APDKQYLL--------------PHSSSAD-ASFNH 708
Query: 862 K--SDLSPASHLKAANGSSVHQKVISSRIDGFIKRPKXXXXXXXXXXXXXDDLIVGNAMF 919
+D P++H+ A DD G F
Sbjct: 709 TPLTDSDPSNHVVAGT--------------------------------RRDDSKQG---F 733
Query: 920 RCIDSGQLGDIWAHCIERCHSKTLRQLLHNHGKLVSLCEVEGVLAAYVAFGDGDIKLRAE 979
C + + DIW IE LR+ L+ GK+ S+ + + F K AE
Sbjct: 734 SCKNRPSVEDIWLAVIENVRVNGLREFLYKEGKIFSI-SIGSAPMVQLMFNSPIAKSTAE 792
Query: 980 RFLRSITNSMEMVL 993
F I + E VL
Sbjct: 793 NFEEHILKAFEAVL 806
>AT5G45720.2 | Symbols: | AAA-type ATPase family protein |
chr5:18543338-18546629 REVERSE LENGTH=956
Length = 956
Score = 347 bits (891), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 240/674 (35%), Positives = 344/674 (51%), Gaps = 127/674 (18%)
Query: 330 CGIPCYWSKRTPKHRG-----ACGRCYSPSLSDTLRRKGSSMLCGSQTFYPNHRRSFSAS 384
CGIP WS+ HRG GR S +SD+ RKG + G+ F
Sbjct: 240 CGIPFNWSR--IHHRGKTFLDIAGRSLSCGISDSKGRKGEA---GTPMFSD--------- 285
Query: 385 NKRRISSRSAQGVLPLLTNSGDVREGSSIGTGRSDDELSTNF-GELDLEGLSRLDGRRWS 443
SS S + LPLL +S D ++E ++ GEL + + L
Sbjct: 286 -----SSSSDREALPLLVDSAD------------NEEWVHDYSGELGIFADNLL------ 322
Query: 444 TSCRSQEGLEIVALNGEGEDGSTPDNSW--SFSQKYKPMFFGELIGQNIVVQSLINAVSR 501
+ G + V G+ S + W SF+QKY P F +L+GQN+VVQ+L NA+++
Sbjct: 323 -----KNGKDSVI----GKKSSRKNTRWHQSFTQKYAPRTFRDLLGQNLVVQALSNAIAK 373
Query: 502 GRIAPVYLFQGPRGTGKTSTARIFAAALNCVASDESNKPCGYCRECTDFISGKSSDLVEV 561
R+ +Y+F GP GTGKTS AR+FA ALNC ++++S KPCG C C + GK+ + E+
Sbjct: 374 RRVGLLYVFHGPNGTGKTSCARVFARALNCHSTEQS-KPCGVCSSCVSYDDGKNRYIREM 432
Query: 562 DGTNKRGIDKARYLLKRLSIGXXXXXXRYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVV 621
+ LL + +I + V +FD+C + + W L K ++ P+RVV
Sbjct: 433 GPVKSFDFEN---LLDKTNI--RQQQKQQLVLIFDDCDTMSTDCWNTLSKIVDRAPRRVV 487
Query: 622 FIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNAD 681
F+ + S LD +P I SRCQK+ F K+KD DI+ L+ I+++E +D++ DAL L+A +D
Sbjct: 488 FVLVCSSLDVLPHIIVSRCQKFFFPKLKDVDIIDSLQLIASKEEIDIDKDALKLVASRSD 547
Query: 682 GSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDNAETVKRARELM 741
GSLRDAE LEQLSLLG RI+ LV E+VG++SDEKL++LL+LA+S+D TVK R +M
Sbjct: 548 GSLRDAEMTLEQLSLLGTRISVPLVQEMVGLISDEKLVDLLDLALSADTVNTVKNLRIIM 607
Query: 742 DSGVDPMVLMSQLAGLIMDIIAGSYTVVDVKPDDSHFGGRSLNESELERLKNALKLLSEA 801
++G++P+ LMSQLA +I DI+AGSY F L++ ++E+LK ALK LSE+
Sbjct: 608 ETGLEPLALMSQLATVITDILAGSY----------DFTKDQLSKEDMEKLKQALKTLSES 657
Query: 802 EKQLRTSSERTTWFTATLLQLGSIPSPDLXXXXXXXXXXXXXXXEDDPSSASRDVTSFKQ 861
EKQLR S+++ TW TA LLQL +PD P S+S D SF
Sbjct: 658 EKQLRVSNDKLTWLTAALLQL----APDKQYLL--------------PHSSSAD-ASFNH 698
Query: 862 K--SDLSPASHLKAANGSSVHQKVISSRIDGFIKRPKXXXXXXXXXXXXXDDLIVGNAMF 919
+D P++H+ A DD G F
Sbjct: 699 TPLTDSDPSNHVVAGT--------------------------------RRDDSKQG---F 723
Query: 920 RCIDSGQLGDIWAHCIERCHSKTLRQLLHNHGKLVSLCEVEGVLAAYVAFGDGDIKLRAE 979
C + + DIW IE LR+ L+ GK+ S+ + + F K AE
Sbjct: 724 SCKNRPSVEDIWLAVIENVRVNGLREFLYKEGKIFSI-SIGSAPMVQLMFNSPIAKSTAE 782
Query: 980 RFLRSITNSMEMVL 993
F I + E VL
Sbjct: 783 NFEEHILKAFEAVL 796
>AT4G24790.2 | Symbols: | AAA-type ATPase family protein |
chr4:12778222-12781345 FORWARD LENGTH=857
Length = 857
Score = 347 bits (889), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 192/374 (51%), Positives = 252/374 (67%), Gaps = 7/374 (1%)
Query: 458 NGEGE-DGSTPDN---SWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGP 513
NG GE D TP + S S SQK++P F EL+GQ +VV+ L++ + RGRI VYLF GP
Sbjct: 222 NGNGESDVVTPSHEVLSRSLSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGP 281
Query: 514 RGTGKTSTARIFAAALNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKAR 573
RGTGKTST++IFAAALNC++ ++PCG C EC + SG+ D++E D R
Sbjct: 282 RGTGKTSTSKIFAAALNCLSQAAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLR 341
Query: 574 YLLKRLSIGXXXXXXRYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVP 633
L+K S+ R+ VF+ DEC LL +TW LL L+ Q VFI +TS+L+ +P
Sbjct: 342 SLIKSASL--PPVSSRFKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLP 399
Query: 634 RTIQSRCQKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQ 693
R + SR QKY F+K+ D DI +L KI +E +D + A+D IA +DGSLRDAE ML+Q
Sbjct: 400 RNVLSRSQKYHFSKVCDADISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQ 459
Query: 694 LSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDNAETVKRARELMDSGVDPMVLMSQ 753
LSLLGKRITTSL +L+GVVSD++LL+LL+LAMSSD + TV RARELM S +DPM L+SQ
Sbjct: 460 LSLLGKRITTSLAYKLIGVVSDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQ 519
Query: 754 LAGLIMDIIAGSYTVVDVKPDDSHFGGRSLNESELERLKNALKLLSEAEKQLRTSSERTT 813
LA +IMDIIAG+ + F R +E E+++L+NALK+LS+AEK LR S +TT
Sbjct: 520 LANVIMDIIAGN-SQESSSATRLRFLTRHTSEEEMQKLRNALKILSDAEKHLRASKNQTT 578
Query: 814 WFTATLLQLGSIPS 827
W T LLQL + S
Sbjct: 579 WLTVALLQLSNTDS 592
>AT4G24790.1 | Symbols: | AAA-type ATPase family protein |
chr4:12778222-12781345 FORWARD LENGTH=857
Length = 857
Score = 347 bits (889), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 192/374 (51%), Positives = 252/374 (67%), Gaps = 7/374 (1%)
Query: 458 NGEGE-DGSTPDN---SWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGP 513
NG GE D TP + S S SQK++P F EL+GQ +VV+ L++ + RGRI VYLF GP
Sbjct: 222 NGNGESDVVTPSHEVLSRSLSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGP 281
Query: 514 RGTGKTSTARIFAAALNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKAR 573
RGTGKTST++IFAAALNC++ ++PCG C EC + SG+ D++E D R
Sbjct: 282 RGTGKTSTSKIFAAALNCLSQAAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLR 341
Query: 574 YLLKRLSIGXXXXXXRYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVP 633
L+K S+ R+ VF+ DEC LL +TW LL L+ Q VFI +TS+L+ +P
Sbjct: 342 SLIKSASL--PPVSSRFKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLP 399
Query: 634 RTIQSRCQKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQ 693
R + SR QKY F+K+ D DI +L KI +E +D + A+D IA +DGSLRDAE ML+Q
Sbjct: 400 RNVLSRSQKYHFSKVCDADISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQ 459
Query: 694 LSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDNAETVKRARELMDSGVDPMVLMSQ 753
LSLLGKRITTSL +L+GVVSD++LL+LL+LAMSSD + TV RARELM S +DPM L+SQ
Sbjct: 460 LSLLGKRITTSLAYKLIGVVSDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQ 519
Query: 754 LAGLIMDIIAGSYTVVDVKPDDSHFGGRSLNESELERLKNALKLLSEAEKQLRTSSERTT 813
LA +IMDIIAG+ + F R +E E+++L+NALK+LS+AEK LR S +TT
Sbjct: 520 LANVIMDIIAGN-SQESSSATRLRFLTRHTSEEEMQKLRNALKILSDAEKHLRASKNQTT 578
Query: 814 WFTATLLQLGSIPS 827
W T LLQL + S
Sbjct: 579 WLTVALLQLSNTDS 592
>AT4G18820.1 | Symbols: | AAA-type ATPase family protein |
chr4:10330371-10334090 FORWARD LENGTH=1097
Length = 1097
Score = 328 bits (842), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 173/353 (49%), Positives = 232/353 (65%), Gaps = 5/353 (1%)
Query: 472 SFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNC 531
S ++KY P F +L+GQN+VVQ+L NAV+R ++ +Y+F GP GTGKTS ARIFA ALNC
Sbjct: 432 SLTEKYTPKTFRDLLGQNLVVQALSNAVARRKLGLLYVFHGPNGTGKTSCARIFARALNC 491
Query: 532 VASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXXXXXXRYT 591
S E KPCG C C GKS ++ EV +K ++ L
Sbjct: 492 -HSMEQPKPCGTCSSCVSHDMGKSWNIREVGPVGNYDFEK---IMDLLDGNVMVSSQSPR 547
Query: 592 VFVFDECHLLPSKTWLGLLKFLEEP-PQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKD 650
VF+FD+C L S W L K ++ P+ VVFI + S LD +P I SRCQK+ F K+KD
Sbjct: 548 VFIFDDCDTLSSDCWNALSKVVDRAAPRHVVFILVCSSLDVLPHVIISRCQKFFFPKLKD 607
Query: 651 GDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELV 710
DIV L+ I+++E ++++ DAL LIA +DGSLRDAE LEQLSLLG+RI+ LV ELV
Sbjct: 608 ADIVYSLQWIASKEEIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 667
Query: 711 GVVSDEKLLELLELAMSSDNAETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYTVVD 770
G+VSDEKL++LL+LA+S+D TVK R +M++ V+P+ LMSQLA +I DI+AGSY
Sbjct: 668 GLVSDEKLVDLLDLALSADTVNTVKNLRTIMETSVEPLALMSQLATVITDILAGSYDFTK 727
Query: 771 VKPDDSHFGGRSLNESELERLKNALKLLSEAEKQLRTSSERTTWFTATLLQLG 823
+ F + L + ++E+L+ ALK LSEAEKQLR S+++ TW TA LLQL
Sbjct: 728 DQHKRKFFRRQPLPKEDMEKLRQALKTLSEAEKQLRVSNDKLTWLTAALLQLA 780
>AT1G21690.1 | Symbols: EMB1968, RFC4 | ATPase family associated
with various cellular activities (AAA) |
chr1:7615675-7618362 FORWARD LENGTH=339
Length = 339
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 129/304 (42%), Gaps = 33/304 (10%)
Query: 469 NSWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAA 528
+S + +KY+P ++ Q VV+ L N + P LF GP GTGKT+TA A
Sbjct: 7 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTAD-CPHMLFYGPPGTGKTTTALAIAHQ 65
Query: 529 LNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXXXXXX 588
L P Y S ++E++ ++ RGI+ R +K +
Sbjct: 66 LF--------GPELY-----------KSRVLELNASDDRGINVVRTKIKDFAAVAVGSNH 106
Query: 589 R--------YTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRC 640
R + + + DE + L + +E + F FI + + + + SRC
Sbjct: 107 RQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 166
Query: 641 QKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLS-LLGK 699
K+ F + + + R+ I +E L ++ +AL ++ + G LR A T L+ + L G
Sbjct: 167 AKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGS 226
Query: 700 RITTSLVNELVGVVSDEKLLELLELAMSSDNAETVKRARELMDSGVDPMVLMSQLAGLIM 759
IT++ + + GVV E + +L S D K ++ G SQ+ +
Sbjct: 227 TITSTDLLNVSGVVPLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPA----SQIINQLF 282
Query: 760 DIIA 763
DI+A
Sbjct: 283 DIVA 286
>AT1G21690.3 | Symbols: EMB1968 | ATPase family associated with
various cellular activities (AAA) |
chr1:7615675-7618421 FORWARD LENGTH=341
Length = 341
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 129/304 (42%), Gaps = 33/304 (10%)
Query: 469 NSWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAA 528
+S + +KY+P ++ Q VV+ L N + P LF GP GTGKT+TA A
Sbjct: 7 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTAD-CPHMLFYGPPGTGKTTTALAIAHQ 65
Query: 529 LNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXXXXXX 588
L P Y S ++E++ ++ RGI+ R +K +
Sbjct: 66 LF--------GPELY-----------KSRVLELNASDDRGINVVRTKIKDFAAVAVGSNH 106
Query: 589 R--------YTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRC 640
R + + + DE + L + +E + F FI + + + + SRC
Sbjct: 107 RQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 166
Query: 641 QKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLS-LLGK 699
K+ F + + + R+ I +E L ++ +AL ++ + G LR A T L+ + L G
Sbjct: 167 AKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGS 226
Query: 700 RITTSLVNELVGVVSDEKLLELLELAMSSDNAETVKRARELMDSGVDPMVLMSQLAGLIM 759
IT++ + + GVV E + +L S D K ++ G SQ+ +
Sbjct: 227 TITSTDLLNVSGVVPLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPA----SQIINQLF 282
Query: 760 DIIA 763
DI+A
Sbjct: 283 DIVA 286
>AT1G21690.4 | Symbols: EMB1968 | ATPase family associated with
various cellular activities (AAA) |
chr1:7615675-7618362 FORWARD LENGTH=332
Length = 332
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 126/304 (41%), Gaps = 40/304 (13%)
Query: 469 NSWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAA 528
+S + +KY+P ++ Q VV+ L N + P LF GP GTGKT+TA A
Sbjct: 7 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTAD-CPHMLFYGPPGTGKTTTALAIAHQ 65
Query: 529 LNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXXXXXX 588
L V +E++ ++ RGI+ R +K +
Sbjct: 66 LFGV--------------------------LELNASDDRGINVVRTKIKDFAAVAVGSNH 99
Query: 589 R--------YTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRC 640
R + + + DE + L + +E + F FI + + + + SRC
Sbjct: 100 RQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 159
Query: 641 QKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLS-LLGK 699
K+ F + + + R+ I +E L ++ +AL ++ + G LR A T L+ + L G
Sbjct: 160 AKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGS 219
Query: 700 RITTSLVNELVGVVSDEKLLELLELAMSSDNAETVKRARELMDSGVDPMVLMSQLAGLIM 759
IT++ + + GVV E + +L S D K ++ G SQ+ +
Sbjct: 220 TITSTDLLNVSGVVPLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPA----SQIINQLF 275
Query: 760 DIIA 763
DI+A
Sbjct: 276 DIVA 279
>AT1G21690.2 | Symbols: EMB1968, RFC4 | ATPase family associated
with various cellular activities (AAA) |
chr1:7615675-7618362 FORWARD LENGTH=327
Length = 327
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 113/269 (42%), Gaps = 32/269 (11%)
Query: 504 IAPVYLFQGPRGTGKTSTARIFAAALNCVASDESNKPCGYCRECTDFISGKSSDLVEVDG 563
+ P LF GP GTGKT+TA A L P Y S ++E++
Sbjct: 29 VCPHMLFYGPPGTGKTTTALAIAHQLF--------GPELY-----------KSRVLELNA 69
Query: 564 TNKRGIDKARYLLKRLSIGXXXXXXR--------YTVFVFDECHLLPSKTWLGLLKFLEE 615
++ RGI+ R +K + R + + + DE + L + +E
Sbjct: 70 SDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMET 129
Query: 616 PPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVIRLRKISTQESLDVETDALDL 675
+ F FI + + + + SRC K+ F + + + R+ I +E L ++ +AL
Sbjct: 130 YSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALST 189
Query: 676 IAMNADGSLRDAETMLEQLS-LLGKRITTSLVNELVGVVSDEKLLELLELAMSSDNAETV 734
++ + G LR A T L+ + L G IT++ + + GVV E + +L S D
Sbjct: 190 LSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFTACKSGDFDIAN 249
Query: 735 KRARELMDSGVDPMVLMSQLAGLIMDIIA 763
K ++ G SQ+ + DI+A
Sbjct: 250 KEVDNIVAEGYPA----SQIINQLFDIVA 274
>AT1G77470.1 | Symbols: RFC3, RFC5 | replication factor C subunit 3
| chr1:29112194-29114323 REVERSE LENGTH=369
Length = 369
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 105/255 (41%), Gaps = 28/255 (10%)
Query: 450 EGLEIVALNGEGEDGSTPDNSWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYL 509
+G ++V + +TP W +KY+P ++ ++ ++ + ++ P L
Sbjct: 23 KGKDVVGFGPPPQSKATP---WV--EKYRPQSLDDVAAHRDIIDTIDRLTNENKL-PHLL 76
Query: 510 FQGPRGTGKTSTARIFAAALNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGI 569
GP GTGKTST I A A N ++E++ ++ RGI
Sbjct: 77 LYGPPGTGKTST--ILAVARKLYGPKYRNM------------------ILELNASDDRGI 116
Query: 570 DKARYLLKRLSIGXXXXXXRYTV--FVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITS 627
D R ++ + + +V + DE + L + +E+ + F I +
Sbjct: 117 DVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGN 176
Query: 628 DLDNVPRTIQSRCQKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDA 687
++ + +QSRC ++ F + + RL+ + E L V L + ++G +R A
Sbjct: 177 HVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSDCGLAALVRLSNGDMRKA 236
Query: 688 ETMLEQLSLLGKRIT 702
+L+ + K IT
Sbjct: 237 LNILQSTHMASKEIT 251
>AT1G63160.1 | Symbols: RFC2 | replication factor C 2 |
chr1:23422068-23423771 REVERSE LENGTH=333
Length = 333
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 22/219 (10%)
Query: 475 QKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVAS 534
+KY+P +++G V L ++R P + GP GTGKT++ A L
Sbjct: 19 EKYRPSKVVDIVGNEDAVSRL-QVIARDGNMPNLILSGPPGTGKTTSILALAHELLGTNY 77
Query: 535 DESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGXXXXX-XRYTVF 593
E+ ++E++ ++ RGID R +K + R+ V
Sbjct: 78 KEA--------------------VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVV 117
Query: 594 VFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDI 653
+ DE + S L + +E F + + IQSRC F+++ D I
Sbjct: 118 ILDEADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQI 177
Query: 654 VIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLE 692
+ RL + E + + L+ I ADG +R A L+
Sbjct: 178 LGRLLVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQ 216