Miyakogusa Predicted Gene
- Lj3g3v3765550.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3765550.1 Non Chatacterized Hit- tr|I1R4H9|I1R4H9_ORYGL
Uncharacterized protein (Fragment) OS=Oryza
glaberrima,28.7,1e-17,coiled-coil,NULL; GB DEF: F15O4.40,NULL; FAMILY
NOT NAMED,NULL; seg,NULL,CUFF.46329.1
(672 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G35530.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 144 2e-34
AT1G35530.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 129 7e-30
>AT1G35530.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr1:13089994-13097078 FORWARD LENGTH=1390
Length = 1390
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 85/115 (73%), Gaps = 1/115 (0%)
Query: 1 MRNGDVNSFVFHPSPRMIPHILKPEVQYVELSIEKFIPRQKNVSDDHLHISPS-KDKLTL 59
MRNG NSF FHPSPRMIPH+ KPEVQ+VE SI++F+PR K + +++ +P+ + KLT
Sbjct: 604 MRNGGTNSFNFHPSPRMIPHVYKPEVQHVEFSIKQFVPRGKKLQEEYATETPAFQKKLTP 663
Query: 60 AEIDLLENYFHQTGENKCRLSLIAFPHFQTFPSRVHKVKHSSGTLMLIDMMQRLQ 114
AE +L Y++ E K R+SLIAFPHFQT PS+VHKV HS T MLID MQ LQ
Sbjct: 664 AETHMLAKYYNNPDEEKLRVSLIAFPHFQTLPSKVHKVMHSRQTGMLIDAMQHLQ 718
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 144/499 (28%), Positives = 216/499 (43%), Gaps = 107/499 (21%)
Query: 253 EFSPRLTNFIKSGVVPESPIDERGPL--KDKCVIRDCISPVHFQEE-QGVSALNSRDTEK 309
E SPRLTNFIKSG+VPESP+ ++G ++ SP+ F E G S+ R +
Sbjct: 919 ELSPRLTNFIKSGIVPESPVYDQGEANREEDLEFPQLSSPMRFSNELAGESSFPERKVQH 978
Query: 310 VIIDHDTCKNVCTSPVSKTQTPLLKLKNCAIRRGRVFLSQIDE------AHTYIADPSFS 363
D++ + + L C + +S I E A+ + S
Sbjct: 979 KCNDYNIVSTTTELRTPQKEVGLANGTEC------LAVSPIPEDWRTPLANLTNTNSSAR 1032
Query: 364 EESHSACGEMSMSIKPAQKFKRLRKVEDTKSNMNQKDNFLASTANFFESSSPASNPTHYK 423
++ + GE +++ +K KRLR++ D S + K+N+ T E+ S K
Sbjct: 1033 KDWRVSSGEKLETLRQPRKLKRLRRLGDCSSAV--KENYPGIT----EADHIRSRSRGKK 1086
Query: 424 HGQGKRKSTH-----------------------NVREFIEEEAEVSSDAYVSNDE--DVE 458
H + K KS +V+ FI+EEAEVSS A +S DE DV
Sbjct: 1087 HIRVKWKSAESWFTLSSVAFALVTKKKKMIMDDDVQVFIDEEAEVSSGAEMSADENEDVT 1146
Query: 459 DGNSHDSFIDDRTNPTAASQPEASRIDMMAIY--------------------------RR 492
+ DSFIDD T PTA +Q E+ ++DMMA+Y RR
Sbjct: 1147 GDSFEDSFIDDGTMPTANTQAESGKVDMMAVYRYIQPKISFFYCEVNELIKNHKVSFHRR 1206
Query: 493 SLLSQTPINGGLN--FPATFSPDDVMTTASISESRDSSGKTVSHFRT-GPTNQSANRTSE 549
SLLSQ+P+ ++ SP I+ESR S K++S RT TN +N+ +
Sbjct: 1207 SLLSQSPLPARFRDLAASSLSPYSAGPLTRINESRSDSDKSLSSLRTPKTTNSESNQDAM 1266
Query: 550 SV---HIDQITSEAVXXXXXXXXXXXDVRSRKRRLTFYHSGHFPNVNLEQEFALESKKES 606
+ + QI+S+ SRKR+ + +S + P +NLE +FA ++
Sbjct: 1267 MIGNLSVVQISSD----------------SRKRKFSLCNSANAPVINLESKFAAHAQATE 1310
Query: 607 VDGEATIDVLCDDQFYND---------LDLDELEAQATSLLKEKSDLSSHKQ--TTAPQS 655
+ + YND LD D +EAQAT LL ++ + K+ T P
Sbjct: 1311 KESHEGVRSNAGALEYNDDDDDAFFATLDFDAMEAQATLLLSKQRSEAKEKEDATVIPNP 1370
Query: 656 HATNLDVFR--SPSFDLGI 672
D +PSFDLG+
Sbjct: 1371 GMQRSDGMEKDAPSFDLGL 1389
>AT1G35530.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr1:13089994-13097078 FORWARD LENGTH=1324
Length = 1324
Score = 129 bits (324), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 144/478 (30%), Positives = 217/478 (45%), Gaps = 86/478 (17%)
Query: 253 EFSPRLTNFIKSGVVPESPIDERGPL--KDKCVIRDCISPVHFQEE-QGVSALNSRDTEK 309
E SPRLTNFIKSG+VPESP+ ++G ++ SP+ F E G S+ R +
Sbjct: 874 ELSPRLTNFIKSGIVPESPVYDQGEANREEDLEFPQLSSPMRFSNELAGESSFPERKVQH 933
Query: 310 VIIDHDTCKNVCTSPVSKTQTPLLKLKNCAIRRGRVFLSQIDE------AHTYIADPSFS 363
D++ + + L C + +S I E A+ + S
Sbjct: 934 KCNDYNIVSTTTELRTPQKEVGLANGTEC------LAVSPIPEDWRTPLANLTNTNSSAR 987
Query: 364 EESHSACGEMSMSIKPAQKFKRLRKVEDTKSNMNQKDNFLASTANFFESSSPASNPTHYK 423
++ + GE +++ +K KRLR++ D S + K+N+ T E+ S K
Sbjct: 988 KDWRVSSGEKLETLRQPRKLKRLRRLGDCSSAV--KENYPGIT----EADHIRSRSRGKK 1041
Query: 424 HGQGKRKSTHN--VREFIEEEAEVSSDAYVSNDE--DVEDGNSHDSFIDDRTNPTAASQP 479
H +GK+K + V+ FI+EEAEVSS A +S DE DV + DSFIDD T PTA +Q
Sbjct: 1042 HIRGKKKMIMDDDVQVFIDEEAEVSSGAEMSADENEDVTGDSFEDSFIDDGTMPTANTQA 1101
Query: 480 EASRIDMMAIY--------------------------RRSLLSQTPINGGLN--FPATFS 511
E+ ++DMMA+Y RRSLLSQ+P+ ++ S
Sbjct: 1102 ESGKVDMMAVYRYIQPKISFFYCEVNELIKNHKVSFHRRSLLSQSPLPARFRDLAASSLS 1161
Query: 512 PDDVMTTASISESRDSSGKTVSHFRT-GPTNQSANRTSESV---HIDQITSEAVXXXXXX 567
P I+ESR S K++S RT TN +N+ + + + QI+S+
Sbjct: 1162 PYSAGPLTRINESRSDSDKSLSSLRTPKTTNSESNQDAMMIGNLSVVQISSD-------- 1213
Query: 568 XXXXXDVRSRKRRLTFYHSGHFPNVNLEQEFALESKKESVDGEATIDVLCDDQFYND--- 624
SRKR+ + +S + P +NLE +FA ++ + + YND
Sbjct: 1214 --------SRKRKFSLCNSANAPVINLESKFAAHAQATEKESHEGVRSNAGALEYNDDDD 1265
Query: 625 ------LDLDELEAQATSLLKEKSDLSSHKQ--TTAPQSHATNLDVFR--SPSFDLGI 672
LD D +EAQAT LL ++ + K+ T P D +PSFDLG+
Sbjct: 1266 DAFFATLDFDAMEAQATLLLSKQRSEAKEKEDATVIPNPGMQRSDGMEKDAPSFDLGL 1323
Score = 113 bits (282), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Query: 18 IPHILKPEVQYVELSIEKFIPRQKNVSDDHLHISPS-KDKLTLAEIDLLENYFHQTGENK 76
IPH+ KPEVQ+VE SI++F+PR K + +++ +P+ + KLT AE +L Y++ E K
Sbjct: 576 IPHVYKPEVQHVEFSIKQFVPRGKKLQEEYATETPAFQKKLTPAETHMLAKYYNNPDEEK 635
Query: 77 CRLSLIAFPHFQTFPSRVHKVKHSSGTLMLIDMMQRLQ 114
R+SLIAFPHFQT PS+VHKV HS T MLID MQ LQ
Sbjct: 636 LRVSLIAFPHFQTLPSKVHKVMHSRQTGMLIDAMQHLQ 673