Miyakogusa Predicted Gene

Lj3g3v3765550.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3765550.1 Non Chatacterized Hit- tr|I1R4H9|I1R4H9_ORYGL
Uncharacterized protein (Fragment) OS=Oryza
glaberrima,28.7,1e-17,coiled-coil,NULL; GB DEF: F15O4.40,NULL; FAMILY
NOT NAMED,NULL; seg,NULL,CUFF.46329.1
         (672 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G35530.2 | Symbols:  | DEAD/DEAH box RNA helicase family prot...   144   2e-34
AT1G35530.1 | Symbols:  | DEAD/DEAH box RNA helicase family prot...   129   7e-30

>AT1G35530.2 | Symbols:  | DEAD/DEAH box RNA helicase family protein
            | chr1:13089994-13097078 FORWARD LENGTH=1390
          Length = 1390

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/115 (59%), Positives = 85/115 (73%), Gaps = 1/115 (0%)

Query: 1   MRNGDVNSFVFHPSPRMIPHILKPEVQYVELSIEKFIPRQKNVSDDHLHISPS-KDKLTL 59
           MRNG  NSF FHPSPRMIPH+ KPEVQ+VE SI++F+PR K + +++   +P+ + KLT 
Sbjct: 604 MRNGGTNSFNFHPSPRMIPHVYKPEVQHVEFSIKQFVPRGKKLQEEYATETPAFQKKLTP 663

Query: 60  AEIDLLENYFHQTGENKCRLSLIAFPHFQTFPSRVHKVKHSSGTLMLIDMMQRLQ 114
           AE  +L  Y++   E K R+SLIAFPHFQT PS+VHKV HS  T MLID MQ LQ
Sbjct: 664 AETHMLAKYYNNPDEEKLRVSLIAFPHFQTLPSKVHKVMHSRQTGMLIDAMQHLQ 718



 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 144/499 (28%), Positives = 216/499 (43%), Gaps = 107/499 (21%)

Query: 253  EFSPRLTNFIKSGVVPESPIDERGPL--KDKCVIRDCISPVHFQEE-QGVSALNSRDTEK 309
            E SPRLTNFIKSG+VPESP+ ++G    ++        SP+ F  E  G S+   R  + 
Sbjct: 919  ELSPRLTNFIKSGIVPESPVYDQGEANREEDLEFPQLSSPMRFSNELAGESSFPERKVQH 978

Query: 310  VIIDHDTCKNVCTSPVSKTQTPLLKLKNCAIRRGRVFLSQIDE------AHTYIADPSFS 363
               D++           + +  L     C      + +S I E      A+    + S  
Sbjct: 979  KCNDYNIVSTTTELRTPQKEVGLANGTEC------LAVSPIPEDWRTPLANLTNTNSSAR 1032

Query: 364  EESHSACGEMSMSIKPAQKFKRLRKVEDTKSNMNQKDNFLASTANFFESSSPASNPTHYK 423
            ++   + GE   +++  +K KRLR++ D  S +  K+N+   T    E+    S     K
Sbjct: 1033 KDWRVSSGEKLETLRQPRKLKRLRRLGDCSSAV--KENYPGIT----EADHIRSRSRGKK 1086

Query: 424  HGQGKRKSTH-----------------------NVREFIEEEAEVSSDAYVSNDE--DVE 458
            H + K KS                         +V+ FI+EEAEVSS A +S DE  DV 
Sbjct: 1087 HIRVKWKSAESWFTLSSVAFALVTKKKKMIMDDDVQVFIDEEAEVSSGAEMSADENEDVT 1146

Query: 459  DGNSHDSFIDDRTNPTAASQPEASRIDMMAIY--------------------------RR 492
              +  DSFIDD T PTA +Q E+ ++DMMA+Y                          RR
Sbjct: 1147 GDSFEDSFIDDGTMPTANTQAESGKVDMMAVYRYIQPKISFFYCEVNELIKNHKVSFHRR 1206

Query: 493  SLLSQTPINGGLN--FPATFSPDDVMTTASISESRDSSGKTVSHFRT-GPTNQSANRTSE 549
            SLLSQ+P+         ++ SP        I+ESR  S K++S  RT   TN  +N+ + 
Sbjct: 1207 SLLSQSPLPARFRDLAASSLSPYSAGPLTRINESRSDSDKSLSSLRTPKTTNSESNQDAM 1266

Query: 550  SV---HIDQITSEAVXXXXXXXXXXXDVRSRKRRLTFYHSGHFPNVNLEQEFALESKKES 606
             +    + QI+S+                SRKR+ +  +S + P +NLE +FA  ++   
Sbjct: 1267 MIGNLSVVQISSD----------------SRKRKFSLCNSANAPVINLESKFAAHAQATE 1310

Query: 607  VDGEATIDVLCDDQFYND---------LDLDELEAQATSLLKEKSDLSSHKQ--TTAPQS 655
             +    +        YND         LD D +EAQAT LL ++   +  K+  T  P  
Sbjct: 1311 KESHEGVRSNAGALEYNDDDDDAFFATLDFDAMEAQATLLLSKQRSEAKEKEDATVIPNP 1370

Query: 656  HATNLDVFR--SPSFDLGI 672
                 D     +PSFDLG+
Sbjct: 1371 GMQRSDGMEKDAPSFDLGL 1389


>AT1G35530.1 | Symbols:  | DEAD/DEAH box RNA helicase family protein
            | chr1:13089994-13097078 FORWARD LENGTH=1324
          Length = 1324

 Score =  129 bits (324), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 144/478 (30%), Positives = 217/478 (45%), Gaps = 86/478 (17%)

Query: 253  EFSPRLTNFIKSGVVPESPIDERGPL--KDKCVIRDCISPVHFQEE-QGVSALNSRDTEK 309
            E SPRLTNFIKSG+VPESP+ ++G    ++        SP+ F  E  G S+   R  + 
Sbjct: 874  ELSPRLTNFIKSGIVPESPVYDQGEANREEDLEFPQLSSPMRFSNELAGESSFPERKVQH 933

Query: 310  VIIDHDTCKNVCTSPVSKTQTPLLKLKNCAIRRGRVFLSQIDE------AHTYIADPSFS 363
               D++           + +  L     C      + +S I E      A+    + S  
Sbjct: 934  KCNDYNIVSTTTELRTPQKEVGLANGTEC------LAVSPIPEDWRTPLANLTNTNSSAR 987

Query: 364  EESHSACGEMSMSIKPAQKFKRLRKVEDTKSNMNQKDNFLASTANFFESSSPASNPTHYK 423
            ++   + GE   +++  +K KRLR++ D  S +  K+N+   T    E+    S     K
Sbjct: 988  KDWRVSSGEKLETLRQPRKLKRLRRLGDCSSAV--KENYPGIT----EADHIRSRSRGKK 1041

Query: 424  HGQGKRKSTHN--VREFIEEEAEVSSDAYVSNDE--DVEDGNSHDSFIDDRTNPTAASQP 479
            H +GK+K   +  V+ FI+EEAEVSS A +S DE  DV   +  DSFIDD T PTA +Q 
Sbjct: 1042 HIRGKKKMIMDDDVQVFIDEEAEVSSGAEMSADENEDVTGDSFEDSFIDDGTMPTANTQA 1101

Query: 480  EASRIDMMAIY--------------------------RRSLLSQTPINGGLN--FPATFS 511
            E+ ++DMMA+Y                          RRSLLSQ+P+         ++ S
Sbjct: 1102 ESGKVDMMAVYRYIQPKISFFYCEVNELIKNHKVSFHRRSLLSQSPLPARFRDLAASSLS 1161

Query: 512  PDDVMTTASISESRDSSGKTVSHFRT-GPTNQSANRTSESV---HIDQITSEAVXXXXXX 567
            P        I+ESR  S K++S  RT   TN  +N+ +  +    + QI+S+        
Sbjct: 1162 PYSAGPLTRINESRSDSDKSLSSLRTPKTTNSESNQDAMMIGNLSVVQISSD-------- 1213

Query: 568  XXXXXDVRSRKRRLTFYHSGHFPNVNLEQEFALESKKESVDGEATIDVLCDDQFYND--- 624
                    SRKR+ +  +S + P +NLE +FA  ++    +    +        YND   
Sbjct: 1214 --------SRKRKFSLCNSANAPVINLESKFAAHAQATEKESHEGVRSNAGALEYNDDDD 1265

Query: 625  ------LDLDELEAQATSLLKEKSDLSSHKQ--TTAPQSHATNLDVFR--SPSFDLGI 672
                  LD D +EAQAT LL ++   +  K+  T  P       D     +PSFDLG+
Sbjct: 1266 DAFFATLDFDAMEAQATLLLSKQRSEAKEKEDATVIPNPGMQRSDGMEKDAPSFDLGL 1323



 Score =  113 bits (282), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 71/98 (72%), Gaps = 1/98 (1%)

Query: 18  IPHILKPEVQYVELSIEKFIPRQKNVSDDHLHISPS-KDKLTLAEIDLLENYFHQTGENK 76
           IPH+ KPEVQ+VE SI++F+PR K + +++   +P+ + KLT AE  +L  Y++   E K
Sbjct: 576 IPHVYKPEVQHVEFSIKQFVPRGKKLQEEYATETPAFQKKLTPAETHMLAKYYNNPDEEK 635

Query: 77  CRLSLIAFPHFQTFPSRVHKVKHSSGTLMLIDMMQRLQ 114
            R+SLIAFPHFQT PS+VHKV HS  T MLID MQ LQ
Sbjct: 636 LRVSLIAFPHFQTLPSKVHKVMHSRQTGMLIDAMQHLQ 673