Miyakogusa Predicted Gene

Lj3g3v3765450.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3765450.1 Non Chatacterized Hit- tr|I3S6F5|I3S6F5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.8,0,coiled-coil,NULL; seg,NULL; SNARE_assoc,SNARE associated
Golgi protein; UNCHARACTERIZED,NULL,CUFF.46367.1
         (330 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G22850.1 | Symbols:  | SNARE associated Golgi protein family ...   273   1e-73
AT1G03260.1 | Symbols:  | SNARE associated Golgi protein family ...    84   2e-16
AT5G19070.1 | Symbols:  | SNARE associated Golgi protein family ...    82   6e-16

>AT1G22850.1 | Symbols:  | SNARE associated Golgi protein family |
           chr1:8080671-8082816 REVERSE LENGTH=344
          Length = 344

 Score =  273 bits (697), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 135/171 (78%), Positives = 149/171 (87%)

Query: 122 YIYRDPINSFLNQLSLFIEGYGPTGYAIFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGT 181
           Y+YRD IN+FL Q S +IEGYG  GYA+F+AVYAGLEILAIPA+PLTMSAGLLFG + GT
Sbjct: 128 YVYRDQINTFLTQFSTYIEGYGTAGYALFIAVYAGLEILAIPALPLTMSAGLLFGPLIGT 187

Query: 182 VIVSISGTVAASVAFLIARYFARERILKLVEGNKKFLAVDKAIGENGFKVVTXXXXXXXX 241
           +IVSISGT+AASVAFLIARYFARERILKLVE NKKFLA+DKAIGENGF+VVT        
Sbjct: 188 IIVSISGTMAASVAFLIARYFARERILKLVEDNKKFLAIDKAIGENGFRVVTLLRLSPLL 247

Query: 242 XXXXGNYLYGLTSVKFLPYVLGSWLGMLPGTWAYVSAGAFGRAIIQEESEL 292
               GNYLYGLTSVKF+PYVLGSWLGMLPG+WAYVSAGAFGRAIIQEES +
Sbjct: 248 PFSLGNYLYGLTSVKFVPYVLGSWLGMLPGSWAYVSAGAFGRAIIQEESNV 298


>AT1G03260.1 | Symbols:  | SNARE associated Golgi protein family |
           chr1:795678-798102 REVERSE LENGTH=274
          Length = 274

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 77/154 (50%), Gaps = 1/154 (0%)

Query: 127 PINSFLNQLSLFI-EGYGPTGYAIFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTVIVS 185
           P+   L    L+I E  GP G       Y  L I+A+PA  LT+  G LFG   G V  S
Sbjct: 31  PVEQKLKDFLLWIKEDLGPFGPLALALAYIPLTIVAVPASVLTLGGGYLFGLPVGFVADS 90

Query: 186 ISGTVAASVAFLIARYFARERILKLVEGNKKFLAVDKAIGENGFKVVTXXXXXXXXXXXX 245
           +  T+ A+ AFL+ R   +  +   ++   KF AV  AI ++GFK+V             
Sbjct: 91  LGATLGATAAFLLGRTIGKSYVTSKIKHYPKFQAVSVAIQKSGFKIVLLLRVVPILPFNM 150

Query: 246 GNYLYGLTSVKFLPYVLGSWLGMLPGTWAYVSAG 279
            NYL  +T V+   Y+L +WLGM+P T+A V  G
Sbjct: 151 LNYLLSVTPVRLGEYMLATWLGMMPITFALVYVG 184


>AT5G19070.1 | Symbols:  | SNARE associated Golgi protein family |
           chr5:6375569-6377470 FORWARD LENGTH=280
          Length = 280

 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 1/157 (0%)

Query: 124 YRDPINSFLNQLSLFIE-GYGPTGYAIFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTV 182
           Y  P+   L    L++E   GP G       Y  L +LA+PA  LT+  G LFG   G V
Sbjct: 26  YFLPVEKLLKDFLLWVEQDLGPWGPFALAVAYIPLTVLAVPASVLTLGGGYLFGLPIGFV 85

Query: 183 IVSISGTVAASVAFLIARYFARERILKLVEGNKKFLAVDKAIGENGFKVVTXXXXXXXXX 242
             S+  T+ +  AFL+ R   +  ++  ++   +F +V  AI ++GFK+           
Sbjct: 86  ADSVGATLGSGAAFLLGRTIGKPFVVAKLKDYPQFQSVALAIEKSGFKICLLLRLAPLLP 145

Query: 243 XXXGNYLYGLTSVKFLPYVLGSWLGMLPGTWAYVSAG 279
               NYL  +T ++  PY+L SWLGM+P T A V  G
Sbjct: 146 FSMLNYLLSVTPIRLGPYLLSSWLGMMPITLALVYVG 182