Miyakogusa Predicted Gene

Lj3g3v3754390.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3754390.2 Non Chatacterized Hit- tr|K4C7D3|K4C7D3_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,85.71,0.29,FAMILY NOT NAMED,NULL; no
description,Helix-loop-helix domain; coiled-coil,NULL; HLH,
helix-loop-hel,CUFF.46322.2
         (177 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G35460.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   130   3e-31
AT4G09180.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   126   8e-30
AT1G51140.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   111   3e-25
AT2G42280.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   110   4e-25
AT2G43140.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   106   8e-24
AT1G05805.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   105   2e-23
AT2G43140.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    97   5e-21
AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 | chr2:10319646-1032...    64   6e-11
AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 | chr4:15079489-1508...    63   1e-10
AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 | chr5:23483670-2348...    62   2e-10
AT4G02590.3 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA...    58   3e-09
AT4G02590.2 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA...    58   3e-09
AT4G02590.1 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA...    58   3e-09
AT1G03040.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    57   5e-09
AT1G03040.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    57   5e-09
AT4G34530.1 | Symbols: CIB1 | cryptochrome-interacting basic-hel...    55   2e-08
AT5G33210.1 | Symbols: SRS8 | SHI-related sequence 8 | chr5:1246...    54   5e-08
AT1G68920.3 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    54   8e-08
AT1G68920.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    54   8e-08
AT1G68920.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    54   8e-08
AT1G26260.2 | Symbols: CIB5 | cryptochrome-interacting basic-hel...    53   1e-07
AT1G26260.1 | Symbols: CIB5 | cryptochrome-interacting basic-hel...    53   1e-07
AT1G26260.3 | Symbols: CIB5 | cryptochrome-interacting basic-hel...    53   1e-07
AT1G10120.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    53   1e-07
AT5G50915.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    52   2e-07
AT5G50915.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    52   2e-07
AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 | chr...    52   3e-07
AT2G18300.3 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    51   5e-07
AT2G18300.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    50   5e-07
AT2G18300.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    50   6e-07
AT3G07340.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    50   6e-07
AT4G36540.2 | Symbols: BEE2 | BR enhanced expression 2 | chr4:17...    50   7e-07
AT4G36540.1 | Symbols: BEE2 | BR enhanced expression 2 | chr4:17...    50   7e-07
AT2G42300.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    50   7e-07
AT1G73830.2 | Symbols: BEE3 | BR enhanced expression 3 | chr1:27...    50   8e-07
AT5G48560.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    50   8e-07
AT1G73830.1 | Symbols: BEE3 | BR enhanced expression 3 | chr1:27...    50   9e-07
AT2G14760.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    50   9e-07
AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | chr...    50   9e-07
AT2G42280.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    50   1e-06
AT3G23690.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    50   1e-06
AT3G57800.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    49   1e-06
AT1G18400.1 | Symbols: BEE1 | BR enhanced expression 1 | chr1:63...    49   2e-06
AT1G25330.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    48   3e-06
AT3G50330.1 | Symbols: HEC2 | basic helix-loop-helix (bHLH) DNA-...    48   4e-06

>AT1G35460.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:13040092-13041907 FORWARD
           LENGTH=259
          Length = 259

 Score =  130 bits (328), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 62/104 (59%), Positives = 75/104 (72%)

Query: 74  DQEFEHGGKAASDIRMDNVLEDSVPCKLRAKRGFATHPRSIAEXXXXXXXXXXXXKLQEL 133
           +++   G     D+ MD + EDSVPC++RAKRG ATHPRSIAE            +LQEL
Sbjct: 154 EEQMSGGISGMMDMNMDKIFEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRRLQEL 213

Query: 134 VPNMDKQTNTADMLDEAVAYVKFLQNQIQELSEHQRRCKCMVQE 177
           VPNMDKQTNTADML+EAV YVK LQ+QIQEL+E Q+RCKC  +E
Sbjct: 214 VPNMDKQTNTADMLEEAVEYVKALQSQIQELTEQQKRCKCKPKE 257


>AT4G09180.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:5847513-5849500 FORWARD
           LENGTH=262
          Length = 262

 Score =  126 bits (316), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 61/98 (62%), Positives = 73/98 (74%)

Query: 80  GGKAASDIRMDNVLEDSVPCKLRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDK 139
           G  + SD+ M+N++EDSV  ++RAKRG ATHPRSIAE            KLQELVPNMDK
Sbjct: 163 GVSSMSDMNMENLMEDSVAFRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDK 222

Query: 140 QTNTADMLDEAVAYVKFLQNQIQELSEHQRRCKCMVQE 177
           QTNTADML+EAV YVK LQ QIQEL+E Q+RC C+ +E
Sbjct: 223 QTNTADMLEEAVEYVKVLQRQIQELTEEQKRCTCIPKE 260


>AT1G51140.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:18943802-18945613 REVERSE
           LENGTH=379
          Length = 379

 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 65/92 (70%), Gaps = 2/92 (2%)

Query: 82  KAASDIRMDNVLEDSVPCKLRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQT 141
           K+ SDI  + +L DS+PCK+RAKRG ATHPRSIAE            KLQ+LVPNMD QT
Sbjct: 287 KSLSDI--EQLLSDSIPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQT 344

Query: 142 NTADMLDEAVAYVKFLQNQIQELSEHQRRCKC 173
           NTADMLD AV Y+K LQ Q++ L E + RC+C
Sbjct: 345 NTADMLDLAVQYIKDLQEQVKALEESRARCRC 376


>AT2G42280.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:17611428-17613163 REVERSE
           LENGTH=359
          Length = 359

 Score =  110 bits (276), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 73/110 (66%), Gaps = 2/110 (1%)

Query: 70  ITHHDQEFEHGGKAASDIRMDNVLE--DSVPCKLRAKRGFATHPRSIAEXXXXXXXXXXX 127
           ++HH    +    A+  + +D  L+  DSVPCK+RAKRG ATHPRSIAE           
Sbjct: 246 LSHHLSLPKSSSTASDMVSVDKYLQLQDSVPCKIRAKRGCATHPRSIAERVRRTRISERM 305

Query: 128 XKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQIQELSEHQRRCKCMVQE 177
            KLQELVPNMDKQTNT+DMLD AV Y+K LQ Q + L++++  CKCM +E
Sbjct: 306 RKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQYKILNDNRANCKCMNKE 355


>AT2G43140.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:17931680-17935639 REVERSE
           LENGTH=309
          Length = 309

 Score =  106 bits (265), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 59/83 (71%)

Query: 91  NVLEDSVPCKLRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEA 150
           N+ EDSVPC+ RAKRGFATHPRSIAE            KLQELVPNMDKQT+ ADMLD A
Sbjct: 221 NIPEDSVPCRARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLA 280

Query: 151 VAYVKFLQNQIQELSEHQRRCKC 173
           V ++K LQ+Q++ L +   RC C
Sbjct: 281 VEHIKGLQHQVESLEKGMERCTC 303


>AT1G05805.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:1744843-1747427 FORWARD
           LENGTH=362
          Length = 362

 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 62/92 (67%), Gaps = 3/92 (3%)

Query: 89  MDNVL---EDSVPCKLRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTAD 145
           MDN +   EDSVPCK+RAKRG ATHPRSIAE            KLQ+LVPNMDKQT+ +D
Sbjct: 268 MDNFMQLPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSD 327

Query: 146 MLDEAVAYVKFLQNQIQELSEHQRRCKCMVQE 177
           MLD AV ++K LQ+Q+Q L + Q  C C   E
Sbjct: 328 MLDLAVQHIKGLQHQLQNLKKDQENCTCGCSE 359


>AT2G43140.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:17932376-17935639 REVERSE
           LENGTH=297
          Length = 297

 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 46/72 (63%), Positives = 54/72 (75%)

Query: 91  NVLEDSVPCKLRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEA 150
           N+ EDSVPC+ RAKRGFATHPRSIAE            KLQELVPNMDKQT+ ADMLD A
Sbjct: 223 NIPEDSVPCRARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLA 282

Query: 151 VAYVKFLQNQIQ 162
           V ++K LQ+Q++
Sbjct: 283 VEHIKGLQHQVE 294


>AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 |
           chr2:10319646-10322177 REVERSE LENGTH=350
          Length = 350

 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 99  CKLRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQ 158
            K+RA+RG AT P SIAE             LQELVPN +K T+ A MLDE + YVKFLQ
Sbjct: 136 TKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNK-TDKASMLDEIIDYVKFLQ 194

Query: 159 NQIQELS 165
            Q++ LS
Sbjct: 195 LQVKVLS 201


>AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 |
           chr4:15079489-15081606 REVERSE LENGTH=310
          Length = 310

 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 100 KLRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQN 159
           K+RA+RG AT P SIAE             LQELVPN +K T+ A MLDE + YVKFLQ 
Sbjct: 129 KVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNK-TDKASMLDEIIDYVKFLQL 187

Query: 160 QIQELS 165
           Q++ LS
Sbjct: 188 QVKVLS 193


>AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 |
           chr5:23483670-23484889 REVERSE LENGTH=297
          Length = 297

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 100 KLRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQN 159
           ++RA+RG AT P SIAE             LQELVPN +K T+ A MLDE + YV+FLQ 
Sbjct: 98  RVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNK-TDKASMLDEIIEYVRFLQL 156

Query: 160 QIQELS 165
           Q++ LS
Sbjct: 157 QVKVLS 162


>AT4G02590.3 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:1137968-1140117
           REVERSE LENGTH=247
          Length = 247

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 96  SVPCKLRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVK 155
           S+  ++RA+RG AT P SIAE             LQELVP ++K T+ A M+DE V YVK
Sbjct: 78  SIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNK-TDRAAMIDEIVDYVK 136

Query: 156 FLQNQIQELS 165
           FL+ Q++ LS
Sbjct: 137 FLRLQVKVLS 146


>AT4G02590.2 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:1137968-1140306
           REVERSE LENGTH=310
          Length = 310

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 96  SVPCKLRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVK 155
           S+  ++RA+RG AT P SIAE             LQELVP ++K T+ A M+DE V YVK
Sbjct: 141 SIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNK-TDRAAMIDEIVDYVK 199

Query: 156 FLQNQIQELS 165
           FL+ Q++ LS
Sbjct: 200 FLRLQVKVLS 209


>AT4G02590.1 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:1137968-1140306
           REVERSE LENGTH=310
          Length = 310

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 96  SVPCKLRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVK 155
           S+  ++RA+RG AT P SIAE             LQELVP ++K T+ A M+DE V YVK
Sbjct: 141 SIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNK-TDRAAMIDEIVDYVK 199

Query: 156 FLQNQIQELS 165
           FL+ Q++ LS
Sbjct: 200 FLRLQVKVLS 209


>AT1G03040.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:704279-706457 REVERSE
           LENGTH=302
          Length = 302

 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 56/113 (49%), Gaps = 20/113 (17%)

Query: 53  SSLFPSHSQQYLSSPNPITHHDQEFEHGGKAASDIRMDNVLEDSVPCKLRAKRGFATHPR 112
           SS+ P    Q +S P P   H Q         S IR           ++RA+RG AT P 
Sbjct: 115 SSMKPIFHGQPMSQPAPPMPHQQ---------STIR----------PRVRARRGQATDPH 155

Query: 113 SIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQIQELS 165
           SIAE             LQELVP ++K T+ A M+DE V YVKFL+ Q++ LS
Sbjct: 156 SIAERLRRERIAERIRSLQELVPTVNK-TDRAAMIDEIVDYVKFLRLQVKVLS 207


>AT1G03040.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:704279-706457 REVERSE
           LENGTH=297
          Length = 297

 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 100 KLRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQN 159
           ++RA+RG AT P SIAE             LQELVP ++K T+ A M+DE V YVKFL+ 
Sbjct: 138 RVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNK-TDRAAMIDEIVDYVKFLRL 196

Query: 160 QIQELS 165
           Q++ LS
Sbjct: 197 QVKVLS 202


>AT4G34530.1 | Symbols: CIB1 | cryptochrome-interacting
           basic-helix-loop-helix 1 | chr4:16498466-16499946
           FORWARD LENGTH=335
          Length = 335

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 40/73 (54%)

Query: 93  LEDSVPCKLRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVA 152
           LE +    +RA+RG AT   SIAE             LQ+LVP  DK T  A MLDE + 
Sbjct: 164 LEKTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIIN 223

Query: 153 YVKFLQNQIQELS 165
           YV+ LQ QI+ LS
Sbjct: 224 YVQSLQRQIEFLS 236


>AT5G33210.1 | Symbols: SRS8 | SHI-related sequence 8 |
           chr5:12465057-12465713 REVERSE LENGTH=173
          Length = 173

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 22/31 (70%), Positives = 27/31 (87%)

Query: 86  DIRMDNVLEDSVPCKLRAKRGFATHPRSIAE 116
           D+ M+ + EDSVPC++RAKRG ATHPRSIAE
Sbjct: 2   DMNMEKIFEDSVPCRVRAKRGCATHPRSIAE 32


>AT1G68920.3 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:25915620-25917675 FORWARD
           LENGTH=485
          Length = 485

 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 6/100 (6%)

Query: 66  SPNPITHHDQEFEHGGKAASDIRMDNVLEDSVPCKLRAKRGFATHPRSIAEXXXXXXXXX 125
           SPN         +  GK +SD   D  +       +RA+RG AT+  S+AE         
Sbjct: 273 SPNSPGKKSNSGKQQGKQSSDPPKDGYIH------VRARRGQATNSHSLAERVRREKISE 326

Query: 126 XXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQIQELS 165
               LQ+LVP  +K T  A MLDE + YV+ LQ Q++ LS
Sbjct: 327 RMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLS 366


>AT1G68920.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:25915620-25917675 FORWARD
           LENGTH=486
          Length = 486

 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 6/100 (6%)

Query: 66  SPNPITHHDQEFEHGGKAASDIRMDNVLEDSVPCKLRAKRGFATHPRSIAEXXXXXXXXX 125
           SPN         +  GK +SD   D  +       +RA+RG AT+  S+AE         
Sbjct: 274 SPNSPGKKSNSGKQQGKQSSDPPKDGYIH------VRARRGQATNSHSLAERVRREKISE 327

Query: 126 XXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQIQELS 165
               LQ+LVP  +K T  A MLDE + YV+ LQ Q++ LS
Sbjct: 328 RMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLS 367


>AT1G68920.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:25915620-25917675 FORWARD
           LENGTH=486
          Length = 486

 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 6/100 (6%)

Query: 66  SPNPITHHDQEFEHGGKAASDIRMDNVLEDSVPCKLRAKRGFATHPRSIAEXXXXXXXXX 125
           SPN         +  GK +SD   D  +       +RA+RG AT+  S+AE         
Sbjct: 274 SPNSPGKKSNSGKQQGKQSSDPPKDGYIH------VRARRGQATNSHSLAERVRREKISE 327

Query: 126 XXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQIQELS 165
               LQ+LVP  +K T  A MLDE + YV+ LQ Q++ LS
Sbjct: 328 RMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLS 367


>AT1G26260.2 | Symbols: CIB5 | cryptochrome-interacting
           basic-helix-loop-helix 5 | chr1:9087214-9089035 FORWARD
           LENGTH=390
          Length = 390

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 38/65 (58%)

Query: 101 LRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQ 160
           +RA+RG AT+  S+AE             LQ+LVP  DK T  A MLDE + YV+ LQ Q
Sbjct: 223 MRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQ 282

Query: 161 IQELS 165
           I+ LS
Sbjct: 283 IEFLS 287


>AT1G26260.1 | Symbols: CIB5 | cryptochrome-interacting
           basic-helix-loop-helix 5 | chr1:9087214-9089035 FORWARD
           LENGTH=390
          Length = 390

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 38/65 (58%)

Query: 101 LRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQ 160
           +RA+RG AT+  S+AE             LQ+LVP  DK T  A MLDE + YV+ LQ Q
Sbjct: 223 MRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQ 282

Query: 161 IQELS 165
           I+ LS
Sbjct: 283 IEFLS 287


>AT1G26260.3 | Symbols: CIB5 | cryptochrome-interacting
           basic-helix-loop-helix 5 | chr1:9087214-9089035 FORWARD
           LENGTH=339
          Length = 339

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 38/65 (58%)

Query: 101 LRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQ 160
           +RA+RG AT+  S+AE             LQ+LVP  DK T  A MLDE + YV+ LQ Q
Sbjct: 172 MRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQ 231

Query: 161 IQELS 165
           I+ LS
Sbjct: 232 IEFLS 236


>AT1G10120.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:3304228-3305984 REVERSE
           LENGTH=366
          Length = 366

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 38/65 (58%)

Query: 101 LRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQ 160
           +RA+RG AT+  S+AE             LQELVP  +K T  A MLDE + YV+ LQ Q
Sbjct: 206 MRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQ 265

Query: 161 IQELS 165
           ++ LS
Sbjct: 266 VEFLS 270


>AT5G50915.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr5:20710764-20712252 REVERSE
           LENGTH=286
          Length = 286

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 36/65 (55%)

Query: 101 LRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQ 160
           +RA+RG AT   S+AE             LQ LVP  DK T  A MLDE + YV+ LQ Q
Sbjct: 136 VRARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQ 195

Query: 161 IQELS 165
           ++ LS
Sbjct: 196 VEFLS 200


>AT5G50915.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr5:20710764-20712252 REVERSE
           LENGTH=286
          Length = 286

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 36/65 (55%)

Query: 101 LRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQ 160
           +RA+RG AT   S+AE             LQ LVP  DK T  A MLDE + YV+ LQ Q
Sbjct: 136 VRARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQ 195

Query: 161 IQELS 165
           ++ LS
Sbjct: 196 VEFLS 200


>AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 |
           chr1:9654753-9655806 FORWARD LENGTH=258
          Length = 258

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 96  SVPCKLRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVK 155
           SV  K RA +G AT P+S+               LQ LVPN  K  + + ML+EAV YVK
Sbjct: 162 SVKGKTRATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTK-VDISTMLEEAVHYVK 220

Query: 156 FLQNQIQELS 165
           FLQ QI+ LS
Sbjct: 221 FLQLQIKLLS 230


>AT2G18300.3 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:7952546-7954446 REVERSE
           LENGTH=364
          Length = 364

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query: 101 LRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQ 160
           +RA+RG AT   S+AE             LQ++VP  +K T  A MLDE + YV+ LQ Q
Sbjct: 185 VRARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQ 244

Query: 161 IQELS 165
           ++ LS
Sbjct: 245 VEFLS 249


>AT2G18300.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:7953022-7954446 REVERSE
           LENGTH=335
          Length = 335

 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query: 101 LRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQ 160
           +RA+RG AT   S+AE             LQ++VP  +K T  A MLDE + YV+ LQ Q
Sbjct: 185 VRARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQ 244

Query: 161 IQELS 165
           ++ LS
Sbjct: 245 VEFLS 249


>AT2G18300.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:7953022-7954446 REVERSE
           LENGTH=337
          Length = 337

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query: 101 LRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQ 160
           +RA+RG AT   S+AE             LQ++VP  +K T  A MLDE + YV+ LQ Q
Sbjct: 185 VRARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQ 244

Query: 161 IQELS 165
           ++ LS
Sbjct: 245 VEFLS 249


>AT3G07340.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr3:2341188-2343288 REVERSE
           LENGTH=456
          Length = 456

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 37/65 (56%)

Query: 101 LRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQ 160
           +RA+RG AT   S+AE             LQ+LVP  +K T  A MLDE + YV+ LQ Q
Sbjct: 258 VRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQ 317

Query: 161 IQELS 165
           ++ LS
Sbjct: 318 VEFLS 322


>AT4G36540.2 | Symbols: BEE2 | BR enhanced expression 2 |
           chr4:17243699-17244965 FORWARD LENGTH=302
          Length = 302

 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query: 101 LRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQ 160
           +RA+RG AT   S+AE             LQ++VP  +K T  A MLDE + YV+ LQ Q
Sbjct: 141 VRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQ 200

Query: 161 IQELS 165
           ++ LS
Sbjct: 201 VEFLS 205


>AT4G36540.1 | Symbols: BEE2 | BR enhanced expression 2 |
           chr4:17243699-17244965 FORWARD LENGTH=304
          Length = 304

 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query: 101 LRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQ 160
           +RA+RG AT   S+AE             LQ++VP  +K T  A MLDE + YV+ LQ Q
Sbjct: 141 VRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQ 200

Query: 161 IQELS 165
           ++ LS
Sbjct: 201 VEFLS 205


>AT2G42300.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:17621542-17624635 FORWARD
           LENGTH=327
          Length = 327

 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 92  VLEDSVP-CKLRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEA 150
           V  D +P   +RA+RG AT   S+AE             LQELVP  DK   TA +LDE 
Sbjct: 175 VESDKLPYVHVRARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEI 234

Query: 151 VAYVKFLQNQIQELS 165
           + +V+ LQ Q++ LS
Sbjct: 235 INHVQTLQRQVEMLS 249


>AT1G73830.2 | Symbols: BEE3 | BR enhanced expression 3 |
           chr1:27760027-27761346 FORWARD LENGTH=260
          Length = 260

 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 36/65 (55%)

Query: 101 LRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQ 160
           +RA+RG AT   SIAE             LQ++VP   K    A MLDE + YV+ LQNQ
Sbjct: 147 VRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQ 206

Query: 161 IQELS 165
           ++ LS
Sbjct: 207 VEFLS 211


>AT5G48560.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr5:19684160-19686871 FORWARD
           LENGTH=498
          Length = 498

 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 37/65 (56%)

Query: 101 LRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQ 160
           +RA+RG AT   S+AE             LQ+LVP  +K T  A MLDE + YV+ LQ Q
Sbjct: 301 VRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQ 360

Query: 161 IQELS 165
           ++ LS
Sbjct: 361 VEFLS 365


>AT1G73830.1 | Symbols: BEE3 | BR enhanced expression 3 |
           chr1:27760027-27761346 FORWARD LENGTH=261
          Length = 261

 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 36/65 (55%)

Query: 101 LRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQ 160
           +RA+RG AT   SIAE             LQ++VP   K    A MLDE + YV+ LQNQ
Sbjct: 147 VRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQ 206

Query: 161 IQELS 165
           ++ LS
Sbjct: 207 VEFLS 211


>AT2G14760.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:6321840-6323312 REVERSE
           LENGTH=328
          Length = 328

 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 100 KLRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQN 159
           K RA RG AT P+S+               LQ LVPN  K  + + ML+EAV YVKFLQ 
Sbjct: 236 KTRASRGAATDPQSLYARKRRERINERLRILQHLVPNGTK-VDISTMLEEAVQYVKFLQL 294

Query: 160 QIQELS 165
           QI+ LS
Sbjct: 295 QIKLLS 300


>AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
           chr4:16239566-16241052 REVERSE LENGTH=352
          Length = 352

 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 100 KLRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQN 159
           K RA RG AT P+S+               LQ LVPN  K  + + ML+EAV YVKFLQ 
Sbjct: 265 KTRASRGAATDPQSLYARKRRERINERLRILQNLVPNGTK-VDISTMLEEAVHYVKFLQL 323

Query: 160 QIQELS 165
           QI+ LS
Sbjct: 324 QIKLLS 329


>AT2G42280.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:17611891-17613163 REVERSE
           LENGTH=300
          Length = 300

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 2/49 (4%)

Query: 70  ITHHDQEFEHGGKAASDIRMDNVLE--DSVPCKLRAKRGFATHPRSIAE 116
           ++HH    +    A+  + +D  L+  DSVPCK+RAKRG ATHPRSIAE
Sbjct: 246 LSHHLSLPKSSSTASDMVSVDKYLQLQDSVPCKIRAKRGCATHPRSIAE 294


>AT3G23690.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr3:8528933-8530655 REVERSE
           LENGTH=371
          Length = 371

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 37/65 (56%)

Query: 101 LRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQ 160
           +RA+RG AT   S+AE             LQ+LVP  ++ T  A MLDE + YV+ LQ Q
Sbjct: 191 VRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQ 250

Query: 161 IQELS 165
           ++ LS
Sbjct: 251 VEFLS 255


>AT3G57800.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr3:21408034-21411321 REVERSE
           LENGTH=379
          Length = 379

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 37/65 (56%)

Query: 101 LRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQ 160
           +RA+RG AT   S+AE             LQELVP  DK   TA +LDE + +V+ LQ Q
Sbjct: 204 VRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQSLQRQ 263

Query: 161 IQELS 165
           ++ LS
Sbjct: 264 VEMLS 268


>AT1G18400.1 | Symbols: BEE1 | BR enhanced expression 1 |
           chr1:6331464-6333576 FORWARD LENGTH=260
          Length = 260

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 36/65 (55%)

Query: 101 LRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQ 160
           +RA+RG AT   S+AE             LQ++VP   K    A MLDE + YV+ LQNQ
Sbjct: 145 VRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQ 204

Query: 161 IQELS 165
           ++ LS
Sbjct: 205 VEFLS 209


>AT1G25330.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:8880515-8882018 REVERSE
           LENGTH=223
          Length = 223

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 35/65 (53%)

Query: 101 LRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQ 160
           +RAKRG AT   S+AE             LQ+LVP   K    A MLD  + YV+ LQNQ
Sbjct: 104 VRAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQNQ 163

Query: 161 IQELS 165
           I+ LS
Sbjct: 164 IEFLS 168


>AT3G50330.1 | Symbols: HEC2 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:18657423-18658118
           REVERSE LENGTH=231
          Length = 231

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 95  DSVPCKLRAKRGFATHPRSIAEXXXXXXXXXXXXKLQELVPNMDKQTNTADMLDEAVAYV 154
           +SV    R     +  P+S+A              LQ LVP   K  +TA MLDEA+ YV
Sbjct: 113 ESVKPPKRKNVRISKDPQSVAARHRRERISERIRILQRLVPGGTK-MDTASMLDEAIHYV 171

Query: 155 KFLQNQIQELSEH 167
           KFL+ Q+Q L EH
Sbjct: 172 KFLKKQVQSLEEH 184