Miyakogusa Predicted Gene

Lj3g3v3752020.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3752020.1 Non Chatacterized Hit- tr|B9F278|B9F278_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,71.7,0.000000000000001,seg,NULL,CUFF.46288.1
         (166 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51545.1 | Symbols: LPA2 | low psii accumulation2 | chr5:2093...   123   6e-29

>AT5G51545.1 | Symbols: LPA2 | low psii accumulation2 |
           chr5:20936434-20937243 FORWARD LENGTH=185
          Length = 185

 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 71/98 (72%), Gaps = 2/98 (2%)

Query: 69  SPVEKPALFDSSEQKQQQTVEQSKTETAFLLAWLGFGAVILVEGIALAASGFLPEEWDKI 128
           +PVEKP     SE+   +  EQ + E AFLL WLG G VIL+EGI LAASGFLPEE DK+
Sbjct: 90  APVEKPVFM--SEEGAAKAEEQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKL 147

Query: 129 FVKYVYPSFTPTVLFFFAGAVVYGVLKYLQNDNITQQK 166
           FVKYVYP FTP+V+ F AG   YGVLKY+QN+ +  Q+
Sbjct: 148 FVKYVYPVFTPSVVLFVAGTTAYGVLKYIQNEKMKGQE 185