Miyakogusa Predicted Gene

Lj3g3v3736620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3736620.1 Non Chatacterized Hit- tr|I1L5P9|I1L5P9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56196
PE,94.96,0,PCI,Proteasome component (PCI) domain; motif in proteasome
subunits, Int-6, Nip-1 a,Proteasome compo,CUFF.46249.1
         (397 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42970.1 | Symbols: COP8, FUS4, EMB134, COP14, CSN4, FUS8, AT...   658   0.0  
AT5G64760.2 | Symbols: RPN5B | regulatory particle non-ATPase su...    50   2e-06
AT5G64760.1 | Symbols: RPN5B | regulatory particle non-ATPase su...    50   2e-06

>AT5G42970.1 | Symbols: COP8, FUS4, EMB134, COP14, CSN4, FUS8, ATS4
           | Proteasome component (PCI) domain protein |
           chr5:17237470-17240649 REVERSE LENGTH=397
          Length = 397

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/397 (81%), Positives = 350/397 (88%)

Query: 1   MESAFASASAITDQRQKIEQYKQILSAVISSNDIAQARRFIDHMLSDDVPLVVSRQLLQT 60
           M+ A  +ASAI DQRQKIEQYK ILS+V+SSND+ QA+RFIDH+LSDDVPLVVSRQLLQ+
Sbjct: 1   MDEALTNASAIGDQRQKIEQYKLILSSVLSSNDLLQAQRFIDHILSDDVPLVVSRQLLQS 60

Query: 61  FAEELGRLGAGTQKEIAHYTLTQIQPRVVSFEEQVLVIREKLAELYESEEQWSKAAQMLS 120
           FA+ELGRL   TQKEIA +TLTQIQPRVVSFEEQ LVIREKLA LYESE++WSKAAQMLS
Sbjct: 61  FAQELGRLEPETQKEIAQFTLTQIQPRVVSFEEQALVIREKLAGLYESEQEWSKAAQMLS 120

Query: 121 GIDLDSGMRVIDDTFRLSKCVQIACLYLEDDDAVNAEAFINKASFLVSNSQHEVLNLKYK 180
           GIDLDSGMR +DD F+LSKC+QIA LYLEDDDAVNAEAFINKASFLVSNSQ+EVLNL+YK
Sbjct: 121 GIDLDSGMRAVDDNFKLSKCIQIARLYLEDDDAVNAEAFINKASFLVSNSQNEVLNLQYK 180

Query: 181 VCYARILDMKRKFLEAALRYYDISQIEKRXXXXXXXXXXXXXXXXSAAVTCTILAAAGPQ 240
           VCYARILDMKRKFLEAALRYY ISQIE+R                SAAVTCTILA AGPQ
Sbjct: 181 VCYARILDMKRKFLEAALRYYGISQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQ 240

Query: 241 RSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLD 300
           RSRVLATLYKDERCSKLKIYPILQKVYLERILR+PEIDAF+EEL+PHQKA LPD  TVLD
Sbjct: 241 RSRVLATLYKDERCSKLKIYPILQKVYLERILRRPEIDAFSEELRPHQKASLPDKSTVLD 300

Query: 301 RAMIEHNLLSASKLYTNISFDELGTLLGIPPHKAEKIASRMIYEDRMRGSIDQVEAIIHF 360
           RAMIEHNLLSASKLYTNI FDELGTLL I P KAEKIA+ MI +DRMRGSIDQ EA+IHF
Sbjct: 301 RAMIEHNLLSASKLYTNIRFDELGTLLAIDPRKAEKIAANMIGQDRMRGSIDQEEAVIHF 360

Query: 361 DDDTEELQRWDQQIVGLCQALNDVLDSMAKKGVPVPV 397
           +DD EELQ+WDQQI GLCQALND+LD MAKKG+ VPV
Sbjct: 361 EDDVEELQQWDQQISGLCQALNDILDGMAKKGMSVPV 397


>AT5G64760.2 | Symbols: RPN5B | regulatory particle non-ATPase
           subunit 5B | chr5:25894027-25896445 REVERSE LENGTH=442
          Length = 442

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 17/154 (11%)

Query: 231 CTILAAA--GPQRSRVLATLYKDERCSKLKIYPILQK--VYLERILRKPEIDAFAEELKP 286
           C  LA A   P +S +L    +D++ S++  + +L K  V +E I      + + +E + 
Sbjct: 261 CWFLALAPHDPMQSSLLNATLEDKKLSEIPDFKMLLKQIVTMEVIQWTSLWNKYKDEFE- 319

Query: 287 HQKALLPDNFTVLDRA-------MIEHNLLSASKLYTNISFDELGTLLGIPPHKAEKIAS 339
           ++K ++  +    D+A       +IEHN+L  SK Y+ I+F  L  LL +   +AEK  S
Sbjct: 320 NEKNMIGGSLG--DKAGEDLKLRIIEHNILVVSKYYSRITFKRLAELLCLTTEEAEKHLS 377

Query: 340 RMIYEDRMRGSIDQVEAIIHFD---DDTEELQRW 370
            M+    +   ID+   II F    D  E L  W
Sbjct: 378 EMVVSKALIAKIDRPSGIICFQIVKDSNEILNSW 411


>AT5G64760.1 | Symbols: RPN5B | regulatory particle non-ATPase
           subunit 5B | chr5:25894027-25896445 REVERSE LENGTH=442
          Length = 442

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 17/154 (11%)

Query: 231 CTILAAA--GPQRSRVLATLYKDERCSKLKIYPILQK--VYLERILRKPEIDAFAEELKP 286
           C  LA A   P +S +L    +D++ S++  + +L K  V +E I      + + +E + 
Sbjct: 261 CWFLALAPHDPMQSSLLNATLEDKKLSEIPDFKMLLKQIVTMEVIQWTSLWNKYKDEFE- 319

Query: 287 HQKALLPDNFTVLDRA-------MIEHNLLSASKLYTNISFDELGTLLGIPPHKAEKIAS 339
           ++K ++  +    D+A       +IEHN+L  SK Y+ I+F  L  LL +   +AEK  S
Sbjct: 320 NEKNMIGGSLG--DKAGEDLKLRIIEHNILVVSKYYSRITFKRLAELLCLTTEEAEKHLS 377

Query: 340 RMIYEDRMRGSIDQVEAIIHFD---DDTEELQRW 370
            M+    +   ID+   II F    D  E L  W
Sbjct: 378 EMVVSKALIAKIDRPSGIICFQIVKDSNEILNSW 411