Miyakogusa Predicted Gene

Lj3g3v3725520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3725520.1 Non Chatacterized Hit- tr|I1HU49|I1HU49_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,43.97,3e-19,SUBFAMILY NOT NAMED,NULL; DNA-DIRECTED RNA POLYMERASE
III,RNA polymerase III Rpc4; RNA_pol_Rpc4,RNA ,CUFF.46233.1
         (115 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G09380.1 | Symbols:  | RNA polymerase III RPC4 | chr5:2911313...   111   1e-25
AT4G25180.1 | Symbols:  | RNA polymerase III RPC4 | chr4:1291174...    87   2e-18

>AT5G09380.1 | Symbols:  | RNA polymerase III RPC4 |
           chr5:2911313-2913136 REVERSE LENGTH=272
          Length = 272

 Score =  111 bits (277), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 79/113 (69%), Gaps = 6/113 (5%)

Query: 1   MLFFELPAPLPLGKKSVSLKGKEKATSTTATGQPPKLGTCAMKDLPKGFLGKMLIYKSGA 60
           M F  LP+ +PL     S   +   T     G P +  T  +K LP+G++GK+L+YKSGA
Sbjct: 159 MFFMRLPS-VPLA----STPTENLETRPNIKG-PVEKKTVDLKALPEGYMGKLLVYKSGA 212

Query: 61  IKLKLGEILYDVSPGSKCEFAQDVVAMNTAQKDCCVLGELSKKVVVTPDLDSL 113
           +K+KLGE+LYDVSPG K EFAQDV+ +NT QK+CC++G++ K  V+TPD+DS+
Sbjct: 213 VKMKLGEVLYDVSPGLKSEFAQDVMVVNTEQKNCCLVGDVYKHAVLTPDIDSI 265


>AT4G25180.1 | Symbols:  | RNA polymerase III RPC4 |
           chr4:12911746-12913907 REVERSE LENGTH=311
          Length = 311

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 6/113 (5%)

Query: 1   MLFFELPAPLPLGKKSVSLKGKEKATSTTATGQPPKLGTCAMKDLPKGFLGKMLIYKSGA 60
           M  F++P  LP+ K++     K      ++    P  G      LP+GF+GKML+YKSGA
Sbjct: 194 MFIFKIPDCLPVVKQTTGATTKRSVREYSSGISNPFEG------LPEGFMGKMLVYKSGA 247

Query: 61  IKLKLGEILYDVSPGSKCEFAQDVVAMNTAQKDCCVLGELSKKVVVTPDLDSL 113
           +KLK+G+ L+DVSPG   +   DVVA++   ++C  +G  +K V VTPD++SL
Sbjct: 248 VKLKVGDALFDVSPGPGTKIPNDVVAIDIKGRNCSRIGSSAKFVTVTPDVESL 300