Miyakogusa Predicted Gene
- Lj3g3v3690050.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3690050.1 CUFF.46209.1
(116 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G52090.1 | Symbols: ATRPB13.6, NRPB11, NRPD11, NRPE11 | DNA-d... 213 2e-56
AT3G52090.2 | Symbols: NRPB11 | DNA-directed RNA polymerase, RBP... 197 8e-52
AT2G29540.2 | Symbols: ATRPC14, ATRPAC14, RPC14 | RNApolymerase ... 54 2e-08
AT2G29540.1 | Symbols: ATRPC14, ATRPAC14, RPC14 | RNApolymerase ... 54 2e-08
>AT3G52090.1 | Symbols: ATRPB13.6, NRPB11, NRPD11, NRPE11 |
DNA-directed RNA polymerase, RBP11-like |
chr3:19318069-19318998 REVERSE LENGTH=116
Length = 116
Score = 213 bits (542), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 98/116 (84%), Positives = 110/116 (94%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPNVLFAG 60
MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+EREDHTIGNI+RMQLHRD NVLFAG
Sbjct: 1 MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTASQSSPMQAYNQSINDLDKELDHLKNAFEADMLRFSRDY 116
Y+LPHPL+YKIIVRIHT SQSSPMQAYNQ+INDLDKELD+LKN FEA++ +FS +
Sbjct: 61 YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116
>AT3G52090.2 | Symbols: NRPB11 | DNA-directed RNA polymerase,
RBP11-like | chr3:19318069-19318998 REVERSE LENGTH=146
Length = 146
Score = 197 bits (502), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 98/146 (67%), Positives = 110/146 (75%), Gaps = 30/146 (20%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPNVLFAG 60
MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+EREDHTIGNI+RMQLHRD NVLFAG
Sbjct: 1 MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60
Query: 61 YKLPHPLQYKIIVR------------------------------IHTASQSSPMQAYNQS 90
Y+LPHPL+YKIIVR IHT SQSSPMQAYNQ+
Sbjct: 61 YQLPHPLKYKIIVRDPKDWFRNLKVVYGCLETVNISWFKLLVLTIHTTSQSSPMQAYNQA 120
Query: 91 INDLDKELDHLKNAFEADMLRFSRDY 116
INDLDKELD+LKN FEA++ +FS +
Sbjct: 121 INDLDKELDYLKNQFEAEVAKFSNQF 146
>AT2G29540.2 | Symbols: ATRPC14, ATRPAC14, RPC14 | RNApolymerase 14
kDa subunit | chr2:12642727-12643828 FORWARD LENGTH=122
Length = 122
Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 28 INAASFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTASQSSPMQAY 87
++ ASFT+ EDHT+ N +R L++DP V A Y +PHP ++ +R+ T + + +
Sbjct: 9 VSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGDPA-REVF 67
Query: 88 NQSINDLDKELDHLKNAFE 106
+ +L + H+++ F+
Sbjct: 68 KDACQELMQMNRHVRSVFD 86
>AT2G29540.1 | Symbols: ATRPC14, ATRPAC14, RPC14 | RNApolymerase 14
kDa subunit | chr2:12642727-12643828 FORWARD LENGTH=122
Length = 122
Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 28 INAASFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTASQSSPMQAY 87
++ ASFT+ EDHT+ N +R L++DP V A Y +PHP ++ +R+ T + + +
Sbjct: 9 VSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGDPA-REVF 67
Query: 88 NQSINDLDKELDHLKNAFE 106
+ +L + H+++ F+
Sbjct: 68 KDACQELMQMNRHVRSVFD 86