Miyakogusa Predicted Gene

Lj3g3v3689900.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3689900.1 tr|G7IKW7|G7IKW7_MEDTR SNW domain-containing
protein OS=Medicago truncatula GN=MTR_2g030450 PE=4
SV=,86.46,0,seg,NULL; coiled-coil,NULL; SKIP_SNW,SKI-interacting
protein SKIP, SNW domain; NUCLEAR PROTEIN SKIP-,CUFF.46200.1
         (603 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G77180.2 | Symbols: SKIP | chromatin protein family | chr1:28...   721   0.0  
AT1G77180.1 | Symbols: SKIP | chromatin protein family | chr1:28...   721   0.0  
AT1G77180.3 | Symbols: SKIP | chromatin protein family | chr1:28...   512   e-145

>AT1G77180.2 | Symbols: SKIP | chromatin protein family |
           chr1:28999791-29001632 REVERSE LENGTH=613
          Length = 613

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/619 (63%), Positives = 449/619 (72%), Gaps = 28/619 (4%)

Query: 1   MAALNELLPQPKSSSATYYDHSNDPWFKQRFTSSEEEKASAAIKQKQVPPYLKRAGFVPR 60
           M +LN+L P PKS++ TYYDHSND WFK R T SE  K+S+ IK K VP YL R G  P+
Sbjct: 1   MKSLNDL-PAPKSTTTTYYDHSNDAWFKNRVTESETVKSSS-IKFKVVPAYLNRQGLRPK 58

Query: 61  RVEDFGDGGAFPEIHVAQYPLDMGRDKSSKPGSKILPVTVDAHGNVAYDAIVKQNENAKK 120
             EDFGDGGAFPEIH+ QYPL MG++KS+KPG+K LPVTVDA GNV +DAIV+QNEN++K
Sbjct: 59  NPEDFGDGGAFPEIHLPQYPLLMGKNKSNKPGAKTLPVTVDAQGNVVFDAIVRQNENSRK 118

Query: 121 IVYTQQKDLIPKILKNXXXX-XXXXXXXXVQKEIDETMQETKAALEKIVNVRLSAAQPKN 179
           IVY+Q KD+IPK LKN             +QKEI ET +ETKAA+EKIVNVRLSAAQP N
Sbjct: 119 IVYSQHKDIIPKFLKNEGDLGTVVDEEEELQKEIQETAEETKAAIEKIVNVRLSAAQPSN 178

Query: 180 VPKQSSDAKYIKYKPSQQSAAFNSGAKERVIRMMEMPVDPLEPPKFKHKRVPKAXXXXXX 239
           + +QS D++YIKYKPSQQS+AFNSGAKER+IRM+EMPVDPL+PPKFKHKRVP+A      
Sbjct: 179 IARQSGDSQYIKYKPSQQSSAFNSGAKERIIRMVEMPVDPLDPPKFKHKRVPRASGSPPV 238

Query: 240 XXXXXXXXXXTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKL 299
                     TVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQ+VQINDNFAKL
Sbjct: 239 PVMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQINDNFAKL 298

Query: 300 SESLYVAEQKAREAVAMRSKVXXXXXXXXXXXXXXXXXXXAQKARSERTGVAPPAAVSFP 359
           SE+LYVAEQKAREAV+MRSKV                   AQKARSERTG A    VS  
Sbjct: 299 SEALYVAEQKAREAVSMRSKVQKEMVMKDKERKEQELRALAQKARSERTGAAMSMPVS-- 356

Query: 360 PEKSSVDDADMRVDYDH-----------PRDREKNFPKESREEREDXXXXXXXXXXXXXX 408
            ++   +  D R DYD+              +E    +E R +RE               
Sbjct: 357 SDRGRSESVDPRGDYDNYDQDRGREREREEPQETREEREKRIQRE------KIREERRRE 410

Query: 409 XXXXXXXXAKDAAMGKKSKITRDRDRDISEKVALGMAT--AKTGTEVMYDERLFNQDKGM 466
                   AKDAAMGKKSKITRDRDRDISEKVALGMA+   K G EVMYD+RLFNQDKGM
Sbjct: 411 RERERRLDAKDAAMGKKSKITRDRDRDISEKVALGMASTGGKGGGEVMYDQRLFNQDKGM 470

Query: 467 SSGFGTDDQYNVYDKGLFTAQPTLSTLYRPKKDVDNETYGGADEQLEKIMKTDRFKPDKA 526
            SGF  DDQYN+YDKGLFTAQPTLSTLY+PKKD D E YG ADEQL+KI  T+RFKPDKA
Sbjct: 471 DSGFAADDQYNLYDKGLFTAQPTLSTLYKPKKDNDEEMYGNADEQLDKIKNTERFKPDKA 530

Query: 527 FSGASERAGP-RDRPVEFE-NEEADPFGLDQFLTEVKKGKKAMEKVGGGGTMKA--SAGS 582
           F+GASER G  RDRPVEFE  EE DPFGL+++++++KKGKK ++K+G GGTM+A    GS
Sbjct: 531 FTGASERVGSKRDRPVEFEKEEEQDPFGLEKWVSDLKKGKKPLDKIGSGGTMRASGGGGS 590

Query: 583 SMRDGYEGGSSRTRIGFER 601
           S RD   GGS RT+I FER
Sbjct: 591 SSRDDDHGGSGRTKINFER 609


>AT1G77180.1 | Symbols: SKIP | chromatin protein family |
           chr1:28999791-29001632 REVERSE LENGTH=613
          Length = 613

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/619 (63%), Positives = 449/619 (72%), Gaps = 28/619 (4%)

Query: 1   MAALNELLPQPKSSSATYYDHSNDPWFKQRFTSSEEEKASAAIKQKQVPPYLKRAGFVPR 60
           M +LN+L P PKS++ TYYDHSND WFK R T SE  K+S+ IK K VP YL R G  P+
Sbjct: 1   MKSLNDL-PAPKSTTTTYYDHSNDAWFKNRVTESETVKSSS-IKFKVVPAYLNRQGLRPK 58

Query: 61  RVEDFGDGGAFPEIHVAQYPLDMGRDKSSKPGSKILPVTVDAHGNVAYDAIVKQNENAKK 120
             EDFGDGGAFPEIH+ QYPL MG++KS+KPG+K LPVTVDA GNV +DAIV+QNEN++K
Sbjct: 59  NPEDFGDGGAFPEIHLPQYPLLMGKNKSNKPGAKTLPVTVDAQGNVVFDAIVRQNENSRK 118

Query: 121 IVYTQQKDLIPKILKNXXXX-XXXXXXXXVQKEIDETMQETKAALEKIVNVRLSAAQPKN 179
           IVY+Q KD+IPK LKN             +QKEI ET +ETKAA+EKIVNVRLSAAQP N
Sbjct: 119 IVYSQHKDIIPKFLKNEGDLGTVVDEEEELQKEIQETAEETKAAIEKIVNVRLSAAQPSN 178

Query: 180 VPKQSSDAKYIKYKPSQQSAAFNSGAKERVIRMMEMPVDPLEPPKFKHKRVPKAXXXXXX 239
           + +QS D++YIKYKPSQQS+AFNSGAKER+IRM+EMPVDPL+PPKFKHKRVP+A      
Sbjct: 179 IARQSGDSQYIKYKPSQQSSAFNSGAKERIIRMVEMPVDPLDPPKFKHKRVPRASGSPPV 238

Query: 240 XXXXXXXXXXTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKL 299
                     TVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQ+VQINDNFAKL
Sbjct: 239 PVMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQINDNFAKL 298

Query: 300 SESLYVAEQKAREAVAMRSKVXXXXXXXXXXXXXXXXXXXAQKARSERTGVAPPAAVSFP 359
           SE+LYVAEQKAREAV+MRSKV                   AQKARSERTG A    VS  
Sbjct: 299 SEALYVAEQKAREAVSMRSKVQKEMVMKDKERKEQELRALAQKARSERTGAAMSMPVS-- 356

Query: 360 PEKSSVDDADMRVDYDH-----------PRDREKNFPKESREEREDXXXXXXXXXXXXXX 408
            ++   +  D R DYD+              +E    +E R +RE               
Sbjct: 357 SDRGRSESVDPRGDYDNYDQDRGREREREEPQETREEREKRIQRE------KIREERRRE 410

Query: 409 XXXXXXXXAKDAAMGKKSKITRDRDRDISEKVALGMAT--AKTGTEVMYDERLFNQDKGM 466
                   AKDAAMGKKSKITRDRDRDISEKVALGMA+   K G EVMYD+RLFNQDKGM
Sbjct: 411 RERERRLDAKDAAMGKKSKITRDRDRDISEKVALGMASTGGKGGGEVMYDQRLFNQDKGM 470

Query: 467 SSGFGTDDQYNVYDKGLFTAQPTLSTLYRPKKDVDNETYGGADEQLEKIMKTDRFKPDKA 526
            SGF  DDQYN+YDKGLFTAQPTLSTLY+PKKD D E YG ADEQL+KI  T+RFKPDKA
Sbjct: 471 DSGFAADDQYNLYDKGLFTAQPTLSTLYKPKKDNDEEMYGNADEQLDKIKNTERFKPDKA 530

Query: 527 FSGASERAGP-RDRPVEFE-NEEADPFGLDQFLTEVKKGKKAMEKVGGGGTMKA--SAGS 582
           F+GASER G  RDRPVEFE  EE DPFGL+++++++KKGKK ++K+G GGTM+A    GS
Sbjct: 531 FTGASERVGSKRDRPVEFEKEEEQDPFGLEKWVSDLKKGKKPLDKIGSGGTMRASGGGGS 590

Query: 583 SMRDGYEGGSSRTRIGFER 601
           S RD   GGS RT+I FER
Sbjct: 591 SSRDDDHGGSGRTKINFER 609


>AT1G77180.3 | Symbols: SKIP | chromatin protein family |
           chr1:28999791-29001632 REVERSE LENGTH=511
          Length = 511

 Score =  512 bits (1319), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 280/461 (60%), Positives = 322/461 (69%), Gaps = 26/461 (5%)

Query: 1   MAALNELLPQPKSSSATYYDHSNDPWFKQRFTSSEEEKASAAIKQKQVPPYLKRAGFVPR 60
           M +LN+L P PKS++ TYYDHSND WFK R T SE  K+S+ IK K VP YL R G  P+
Sbjct: 1   MKSLNDL-PAPKSTTTTYYDHSNDAWFKNRVTESETVKSSS-IKFKVVPAYLNRQGLRPK 58

Query: 61  RVEDFGDGGAFPEIHVAQYPLDMGRDKSSKPGSKILPVTVDAHGNVAYDAIVKQNENAKK 120
             EDFGDGGAFPEIH+ QYPL MG++KS+KPG+K LPVTVDA GNV +DAIV+QNEN++K
Sbjct: 59  NPEDFGDGGAFPEIHLPQYPLLMGKNKSNKPGAKTLPVTVDAQGNVVFDAIVRQNENSRK 118

Query: 121 IVYTQQKDLIPKILKNXXXX-XXXXXXXXVQKEIDETMQETKAALEKIVNVRLSAAQPKN 179
           IVY+Q KD+IPK LKN             +QKEI ET +ETKAA+EKIVNVRLSAAQP N
Sbjct: 119 IVYSQHKDIIPKFLKNEGDLGTVVDEEEELQKEIQETAEETKAAIEKIVNVRLSAAQPSN 178

Query: 180 VPKQSSDAKYIKYKPSQQSAAFNSGAKERVIRMMEMPVDPLEPPKFKHKRVPKAXXXXXX 239
           + +QS D++YIKYKPSQQS+AFNSGAKER+IRM+EMPVDPL+PPKFKHKRVP+A      
Sbjct: 179 IARQSGDSQYIKYKPSQQSSAFNSGAKERIIRMVEMPVDPLDPPKFKHKRVPRASGSPPV 238

Query: 240 XXXXXXXXXXTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKL 299
                     TVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQ+VQINDNFAKL
Sbjct: 239 PVMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQINDNFAKL 298

Query: 300 SESLYVAEQKAREAVAMRSKVXXXXXXXXXXXXXXXXXXXAQKARSERTGVAPPAAVSFP 359
           SE+LYVAEQKAREAV+MRSKV                   AQKARSERTG    AA+S P
Sbjct: 299 SEALYVAEQKAREAVSMRSKVQKEMVMKDKERKEQELRALAQKARSERTG----AAMSMP 354

Query: 360 --PEKSSVDDADMRVDYDH-----------PRDREKNFPKESREEREDXXXXXXXXXXXX 406
              ++   +  D R DYD+              +E    +E R +RE             
Sbjct: 355 VSSDRGRSESVDPRGDYDNYDQDRGREREREEPQETREEREKRIQRE------KIREERR 408

Query: 407 XXXXXXXXXXAKDAAMGKKSKITRDRDRDISEKVALGMATA 447
                     AKDAAMGKKSKITRDRDRDISEKVALGMA+ 
Sbjct: 409 RERERERRLDAKDAAMGKKSKITRDRDRDISEKVALGMAST 449



 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 2/55 (3%)

Query: 549 DPFGLDQFLTEVKKGKKAMEKVGGGGTMKA--SAGSSMRDGYEGGSSRTRIGFER 601
           DPFGL+++++++KKGKK ++K+G GGTM+A    GSS RD   GGS RT+I FER
Sbjct: 453 DPFGLEKWVSDLKKGKKPLDKIGSGGTMRASGGGGSSSRDDDHGGSGRTKINFER 507