Miyakogusa Predicted Gene

Lj3g3v3653450.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3653450.1 tr|C7J8U1|C7J8U1_ORYSJ Os11g0146550 protein
OS=Oryza sativa subsp. japonica GN=Os11g0146550 PE=4
SV=,70.31,2e-18,FAMILY NOT NAMED,NULL; GIY-YIG,UvrABC system subunit
C, N-terminal; GIY-YIG endonuclease,UvrABC syst,CUFF.46159.1
         (109 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43210.1 | Symbols:  | Excinuclease ABC, C subunit, N-termina...   125   4e-30
AT2G30350.2 | Symbols:  | Excinuclease ABC, C subunit, N-termina...    57   3e-09

>AT5G43210.1 | Symbols:  | Excinuclease ABC, C subunit, N-terminal |
           chr5:17347567-17348379 FORWARD LENGTH=170
          Length = 170

 Score =  125 bits (315), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 74/104 (71%)

Query: 6   RSFRSMKRPIPNPNLXXXXXXXXXXXXXXWCVYLILSTNHPIKTYVGVTTNFPRRLKQHN 65
           ++ ++ +  +P P+               W VYLILST  PIKTYVG+TT+F RRLKQHN
Sbjct: 25  KNLKNSQTQVPIPSSSSPQENSKIPKSKSWSVYLILSTTEPIKTYVGITTDFSRRLKQHN 84

Query: 66  GQLIGGAKASRAGRPWICACVICGFTNRSEACAFESKWKVFSRR 109
           G++ GGAKAS AGRPW+CAC+I GFT  S+A +FESKWK+F+R+
Sbjct: 85  GEIRGGAKASSAGRPWLCACIITGFTCLSQASSFESKWKIFTRK 128


>AT2G30350.2 | Symbols:  | Excinuclease ABC, C subunit, N-terminal |
           chr2:12934237-12935742 REVERSE LENGTH=368
          Length = 368

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 35/64 (54%)

Query: 41  LSTNHPIKTYVGVTTNFPRRLKQHNGQLIGGAKASRAGRPWICACVICGFTNRSEACAFE 100
           LS  H  +TY+G T N  RR++QHNG++  GA  ++  RPW     I GF     A  FE
Sbjct: 36  LSPRHKGQTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRPWEMVLCIYGFPTNVSALQFE 95

Query: 101 SKWK 104
             W+
Sbjct: 96  WAWQ 99