Miyakogusa Predicted Gene
- Lj3g3v3652410.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3652410.2 Non Chatacterized Hit- tr|K4A8Z1|K4A8Z1_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si035347,54.55,2e-16,RNA-binding domain, RBD,NULL; RRM_1,RNA
recognition motif domain; zf-CCCH,Zinc finger, CCCH-type;
no,CUFF.46246.2
(449 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G51950.2 | Symbols: | Zinc finger (CCCH-type) family protein... 331 6e-91
AT3G51950.1 | Symbols: | Zinc finger (CCCH-type) family protein... 331 6e-91
AT3G21100.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 234 9e-62
AT5G12440.3 | Symbols: | CCCH-type zinc fingerfamily protein wi... 204 8e-53
AT5G12440.2 | Symbols: | CCCH-type zinc fingerfamily protein wi... 204 8e-53
AT5G12440.1 | Symbols: | CCCH-type zinc fingerfamily protein wi... 204 8e-53
AT3G63450.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 187 1e-47
AT3G63450.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 181 8e-46
AT3G63450.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 181 8e-46
AT1G51520.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 159 3e-39
AT1G51520.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 158 6e-39
AT3G21100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 156 3e-38
AT2G05160.1 | Symbols: | CCCH-type zinc fingerfamily protein wi... 136 3e-32
AT3G52980.1 | Symbols: | Zinc finger (CCCH-type) family protein... 111 1e-24
AT1G51530.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 9e-11
AT1G51530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 9e-08
>AT3G51950.2 | Symbols: | Zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein |
chr3:19278244-19280407 REVERSE LENGTH=540
Length = 540
Score = 331 bits (849), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 213/439 (48%), Positives = 245/439 (55%), Gaps = 104/439 (23%)
Query: 1 MDSYEATRIVFSRIQNLDPENAAKIMGVLLLQDHGEKEMIRLAFGPEALLHSVIIKARKE 60
MD YEATRIV SRIQ+LDPENA+KIMG+LLLQDHGEKEMIRLAFGPE L+HSVI+KA+KE
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60
Query: 61 LGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGINLPPSLTIPNPSWSSSMSELHNPE 120
LG + WS EL +P+
Sbjct: 61 LGL--------------------------------------MNCSRSPWSH-QDELISPK 81
Query: 121 DLMSPS---SSLPFYPNG--SSDPVVDDFQLQDQLSFLNDGSPTLAHKNNNPDLFYXXXX 175
+ S +SLPFY NG SS + +DF+L D ++
Sbjct: 82 NNRGSSLNPASLPFYANGGRSSRDLTNDFELMDDMNSR---------------------- 119
Query: 176 XXXXXXXXGLFPSYGWGGSLHRRSCS-VNDACLGSEDPNSGLGWKPCLYFARGYCKNGTS 234
S + GS+H RS S V D D + G G PC YFARG+CKNG S
Sbjct: 120 ------------STDFLGSVHARSGSCVLDGLGYGGDSDLGFGGVPCSYFARGFCKNGAS 167
Query: 235 CRFXXXXXXXXXXXXIVGSPSKIEMMDQCHELLRSKSVQQQRLAAATSQLMASSTFP-YS 293
CRF +VGSPS+IE LLRS SV RLA M S+ P +S
Sbjct: 168 CRFVHSDGGAD----LVGSPSRIE-------LLRSNSVPP-RLA---HHFMTRSSLPSFS 212
Query: 294 SKCMNXXXXXXXXXXXXXXXXXXMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLT 353
+K +N M+ ++L K GR R ER D S M PASRQIYLT
Sbjct: 213 TKGVNLQQNDVQRAAAAL-----MIGDELQKLGRWRPERIDLS----AMACPASRQIYLT 263
Query: 354 FPADSTFREEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYAETVKLILSKGNPHFVCD 413
FPADS FREEDVSNYFS FGPVQDVRIPYQQKRMFGFVTFVY ETVK IL+KGNPHFVCD
Sbjct: 264 FPADSRFREEDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVKSILAKGNPHFVCD 323
Query: 414 ARVLVKPYKEKGKVPDRYR 432
+RVLVKPYKEKGKVPD+YR
Sbjct: 324 SRVLVKPYKEKGKVPDKYR 342
>AT3G51950.1 | Symbols: | Zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein |
chr3:19278244-19280407 REVERSE LENGTH=540
Length = 540
Score = 331 bits (849), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 213/439 (48%), Positives = 245/439 (55%), Gaps = 104/439 (23%)
Query: 1 MDSYEATRIVFSRIQNLDPENAAKIMGVLLLQDHGEKEMIRLAFGPEALLHSVIIKARKE 60
MD YEATRIV SRIQ+LDPENA+KIMG+LLLQDHGEKEMIRLAFGPE L+HSVI+KA+KE
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60
Query: 61 LGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGINLPPSLTIPNPSWSSSMSELHNPE 120
LG + WS EL +P+
Sbjct: 61 LGL--------------------------------------MNCSRSPWSH-QDELISPK 81
Query: 121 DLMSPS---SSLPFYPNG--SSDPVVDDFQLQDQLSFLNDGSPTLAHKNNNPDLFYXXXX 175
+ S +SLPFY NG SS + +DF+L D ++
Sbjct: 82 NNRGSSLNPASLPFYANGGRSSRDLTNDFELMDDMNSR---------------------- 119
Query: 176 XXXXXXXXGLFPSYGWGGSLHRRSCS-VNDACLGSEDPNSGLGWKPCLYFARGYCKNGTS 234
S + GS+H RS S V D D + G G PC YFARG+CKNG S
Sbjct: 120 ------------STDFLGSVHARSGSCVLDGLGYGGDSDLGFGGVPCSYFARGFCKNGAS 167
Query: 235 CRFXXXXXXXXXXXXIVGSPSKIEMMDQCHELLRSKSVQQQRLAAATSQLMASSTFP-YS 293
CRF +VGSPS+IE LLRS SV RLA M S+ P +S
Sbjct: 168 CRFVHSDGGAD----LVGSPSRIE-------LLRSNSVPP-RLA---HHFMTRSSLPSFS 212
Query: 294 SKCMNXXXXXXXXXXXXXXXXXXMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLT 353
+K +N M+ ++L K GR R ER D S M PASRQIYLT
Sbjct: 213 TKGVNLQQNDVQRAAAAL-----MIGDELQKLGRWRPERIDLS----AMACPASRQIYLT 263
Query: 354 FPADSTFREEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYAETVKLILSKGNPHFVCD 413
FPADS FREEDVSNYFS FGPVQDVRIPYQQKRMFGFVTFVY ETVK IL+KGNPHFVCD
Sbjct: 264 FPADSRFREEDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVKSILAKGNPHFVCD 323
Query: 414 ARVLVKPYKEKGKVPDRYR 432
+RVLVKPYKEKGKVPD+YR
Sbjct: 324 SRVLVKPYKEKGKVPDKYR 342
>AT3G21100.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7399162-7401870 FORWARD LENGTH=602
Length = 602
Score = 234 bits (597), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 168/441 (38%), Positives = 233/441 (52%), Gaps = 52/441 (11%)
Query: 1 MDSYEATRIVFSRIQNLDPENAAKIMGVLLLQDHGEKEMIRLAFGPEALLHSVIIKARKE 60
MD + T I+F++I+ L+P+ A+KI+G LLLQD G+ +++RLA GPE LL SV +KA+
Sbjct: 1 MDPGDPTSILFTKIRTLEPDFASKIIGYLLLQDLGKTDLMRLALGPETLLQSVCLKAKSA 60
Query: 61 LGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGINLPPSLTIPNPSWSSSMSELHNPE 120
LG G S +PS+++ S NP
Sbjct: 61 LGLSSNGSSSASSPLNPISRPINIHRHSLSHSSPGNGF--SRNPLSPSFATPGSLGSNPN 118
Query: 121 DLMSP--SSSLPFYPNGSS-------DPVVDDFQLQDQLSFLNDGSPTLAHKNNNPDLFY 171
+ SP +SS F +G++ +D+ QL + LSFLN+ S KNN+ L
Sbjct: 119 MISSPFQASSSLFASDGAAAGDSTGNGDFLDEQQLGNYLSFLNESSS----KNNDESLDP 174
Query: 172 XXXXXXXXXXXXGLFPSYGWGGSLHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKN 231
F + LH+RS S +DAC GSE+P G G + R +
Sbjct: 175 FG------------FSADNGDAHLHKRSFSASDACFGSEEPGFGGGG-----YNR-FLHG 216
Query: 232 GTSCRFXXXXXXXXXXXXIVGSPSKIEMMDQCHELLRSKSVQQQRLAAATSQLMASSTFP 291
G F GSP + Q E++R K Q+QR+AAA Q +A++ P
Sbjct: 217 GLGDDFDSPGG--------FGSPDYVSR--QQEEIVRMKMAQRQRMAAA--QYLAATGSP 264
Query: 292 YS-SKCMNXXXXXXXXXXXXXXXXXXMMSEDLHKFGR-SRLERNDFSLNSPGMVNPASRQ 349
S K +N E+ + FG R ER++F + N AS+Q
Sbjct: 265 MSYEKGLNFLLHQRNAHRSGAG----QFGEEGYWFGSPGRHERDEF-MGMGDKSNSASKQ 319
Query: 350 IYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYAETVKLILSKGNPH 409
IYLTFPADS+F +EDVSNYF FGPVQDVRIPYQQKRMFGFVTF+++ETV++IL++GNPH
Sbjct: 320 IYLTFPADSSFTDEDVSNYFGNFGPVQDVRIPYQQKRMFGFVTFLHSETVRIILARGNPH 379
Query: 410 FVCDARVLVKPYKEKGKVPDR 430
F+CD+RVLVKPYKEKG++ ++
Sbjct: 380 FICDSRVLVKPYKEKGRILEK 400
>AT5G12440.3 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr5:4035891-4038604 REVERSE
LENGTH=650
Length = 650
Score = 204 bits (520), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 132/301 (43%), Positives = 167/301 (55%), Gaps = 28/301 (9%)
Query: 135 GSSDPVVDDFQLQDQLSFLNDGSPTLAHKNNNPDLFYXXXXXXXXXXXXGLFPSYGWGGS 194
G +D ++DD QL D LSFL+D + DL G
Sbjct: 162 GGAD-LLDDQQLNDCLSFLDDSC------SKTEDLVDPSIPLDYSVDGDG-------ETH 207
Query: 195 LHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFXXXX--XXXXXXXXIVG 252
LHRRS S DA S D G G KPC+YF+RG CKNG SC+F +
Sbjct: 208 LHRRSFSC-DASFVSGDDGFGGGCKPCVYFSRGLCKNGESCKFIHGGYPDNMDGNGIVAD 266
Query: 253 SPSKIE-MMDQCHELLRSK-SVQQQRLAAATSQLMASS-TFPYSSKCMNXXXXXXXXXXX 309
SP K+E + Q E++R K + QQQRLA SQ++ + PY +
Sbjct: 267 SPRKMENFVRQHEEMMRLKLAYQQQRLA---SQILGRAPQLPYEKRM-----DFLLQQHA 318
Query: 310 XXXXXXXMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYF 369
E RLER + +++ N ASRQIYLTFPADSTF++EDV+ YF
Sbjct: 319 QRDGGLPFGDERFWSSSPGRLERMELAMHLGDQSNSASRQIYLTFPADSTFKDEDVATYF 378
Query: 370 SIFGPVQDVRIPYQQKRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPD 429
S+FG VQDVRIPYQQKRMFGFV+F + ETVK++L++GNPHF+CD+RVLVKPYKEKGKV D
Sbjct: 379 SLFGTVQDVRIPYQQKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLD 438
Query: 430 R 430
+
Sbjct: 439 K 439
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 46/63 (73%)
Query: 1 MDSYEATRIVFSRIQNLDPENAAKIMGVLLLQDHGEKEMIRLAFGPEALLHSVIIKARKE 60
MDS +AT ++ ++I++L+P+ A KI+G LLL D G+++++ LA GPE++L S I K +
Sbjct: 1 MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSL 60
Query: 61 LGF 63
LG
Sbjct: 61 LGI 63
>AT5G12440.2 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr5:4035891-4038604 REVERSE
LENGTH=650
Length = 650
Score = 204 bits (520), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 132/301 (43%), Positives = 167/301 (55%), Gaps = 28/301 (9%)
Query: 135 GSSDPVVDDFQLQDQLSFLNDGSPTLAHKNNNPDLFYXXXXXXXXXXXXGLFPSYGWGGS 194
G +D ++DD QL D LSFL+D + DL G
Sbjct: 162 GGAD-LLDDQQLNDCLSFLDDSC------SKTEDLVDPSIPLDYSVDGDG-------ETH 207
Query: 195 LHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFXXXX--XXXXXXXXIVG 252
LHRRS S DA S D G G KPC+YF+RG CKNG SC+F +
Sbjct: 208 LHRRSFSC-DASFVSGDDGFGGGCKPCVYFSRGLCKNGESCKFIHGGYPDNMDGNGIVAD 266
Query: 253 SPSKIE-MMDQCHELLRSK-SVQQQRLAAATSQLMASS-TFPYSSKCMNXXXXXXXXXXX 309
SP K+E + Q E++R K + QQQRLA SQ++ + PY +
Sbjct: 267 SPRKMENFVRQHEEMMRLKLAYQQQRLA---SQILGRAPQLPYEKRM-----DFLLQQHA 318
Query: 310 XXXXXXXMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYF 369
E RLER + +++ N ASRQIYLTFPADSTF++EDV+ YF
Sbjct: 319 QRDGGLPFGDERFWSSSPGRLERMELAMHLGDQSNSASRQIYLTFPADSTFKDEDVATYF 378
Query: 370 SIFGPVQDVRIPYQQKRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPD 429
S+FG VQDVRIPYQQKRMFGFV+F + ETVK++L++GNPHF+CD+RVLVKPYKEKGKV D
Sbjct: 379 SLFGTVQDVRIPYQQKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLD 438
Query: 430 R 430
+
Sbjct: 439 K 439
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 46/63 (73%)
Query: 1 MDSYEATRIVFSRIQNLDPENAAKIMGVLLLQDHGEKEMIRLAFGPEALLHSVIIKARKE 60
MDS +AT ++ ++I++L+P+ A KI+G LLL D G+++++ LA GPE++L S I K +
Sbjct: 1 MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSL 60
Query: 61 LGF 63
LG
Sbjct: 61 LGI 63
>AT5G12440.1 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr5:4035891-4038604 REVERSE
LENGTH=650
Length = 650
Score = 204 bits (520), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 132/301 (43%), Positives = 167/301 (55%), Gaps = 28/301 (9%)
Query: 135 GSSDPVVDDFQLQDQLSFLNDGSPTLAHKNNNPDLFYXXXXXXXXXXXXGLFPSYGWGGS 194
G +D ++DD QL D LSFL+D + DL G
Sbjct: 162 GGAD-LLDDQQLNDCLSFLDDSC------SKTEDLVDPSIPLDYSVDGDG-------ETH 207
Query: 195 LHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFXXXX--XXXXXXXXIVG 252
LHRRS S DA S D G G KPC+YF+RG CKNG SC+F +
Sbjct: 208 LHRRSFSC-DASFVSGDDGFGGGCKPCVYFSRGLCKNGESCKFIHGGYPDNMDGNGIVAD 266
Query: 253 SPSKIE-MMDQCHELLRSK-SVQQQRLAAATSQLMASS-TFPYSSKCMNXXXXXXXXXXX 309
SP K+E + Q E++R K + QQQRLA SQ++ + PY +
Sbjct: 267 SPRKMENFVRQHEEMMRLKLAYQQQRLA---SQILGRAPQLPYEKRM-----DFLLQQHA 318
Query: 310 XXXXXXXMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYF 369
E RLER + +++ N ASRQIYLTFPADSTF++EDV+ YF
Sbjct: 319 QRDGGLPFGDERFWSSSPGRLERMELAMHLGDQSNSASRQIYLTFPADSTFKDEDVATYF 378
Query: 370 SIFGPVQDVRIPYQQKRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPD 429
S+FG VQDVRIPYQQKRMFGFV+F + ETVK++L++GNPHF+CD+RVLVKPYKEKGKV D
Sbjct: 379 SLFGTVQDVRIPYQQKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLD 438
Query: 430 R 430
+
Sbjct: 439 K 439
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 46/63 (73%)
Query: 1 MDSYEATRIVFSRIQNLDPENAAKIMGVLLLQDHGEKEMIRLAFGPEALLHSVIIKARKE 60
MDS +AT ++ ++I++L+P+ A KI+G LLL D G+++++ LA GPE++L S I K +
Sbjct: 1 MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSL 60
Query: 61 LGF 63
LG
Sbjct: 61 LGI 63
>AT3G63450.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:23427191-23428864 REVERSE LENGTH=406
Length = 406
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/171 (60%), Positives = 115/171 (67%), Gaps = 17/171 (9%)
Query: 265 ELLRSKSVQQQRLAAATSQLMASSTFPYSSKCMNXXXXXXXXXXXXXXXXXXMMSEDLHK 324
E+LRS SV RLA + +P+S K +N MM +DLHK
Sbjct: 89 EVLRSNSVPP-RLANQFT------GYPFSPKGVNLQQSEAQRAAAL------MMGDDLHK 135
Query: 325 FGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQQ 384
G R ER D S PASRQIYLTFPADS FREEDVS+YFS FGPVQDVRIPYQQ
Sbjct: 136 LGIWRPERIDLS----ATACPASRQIYLTFPADSIFREEDVSDYFSTFGPVQDVRIPYQQ 191
Query: 385 KRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDRYRQPP 435
KRMFGFVTF+Y ETVK IL+KGNPHFVC +RVLVKPYKEKGKVPD+YR P
Sbjct: 192 KRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEKGKVPDKYRTKP 242
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/61 (81%), Positives = 56/61 (91%)
Query: 1 MDSYEATRIVFSRIQNLDPENAAKIMGVLLLQDHGEKEMIRLAFGPEALLHSVIIKARKE 60
MD YEATRIV SRIQNLDP NA+KI+G+LLLQDHGEKEMIRLAFGP+ LLHSVI KA+K+
Sbjct: 1 MDVYEATRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKD 60
Query: 61 L 61
L
Sbjct: 61 L 61
>AT3G63450.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:23427191-23428864 REVERSE LENGTH=404
Length = 404
Score = 181 bits (460), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 101/168 (60%), Positives = 113/168 (67%), Gaps = 17/168 (10%)
Query: 265 ELLRSKSVQQQRLAAATSQLMASSTFPYSSKCMNXXXXXXXXXXXXXXXXXXMMSEDLHK 324
E+LRS SV RLA + +P+S K +N MM +DLHK
Sbjct: 89 EVLRSNSVPP-RLANQFT------GYPFSPKGVNLQQSEAQRAAAL------MMGDDLHK 135
Query: 325 FGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQQ 384
G R ER D S PASRQIYLTFPADS FREEDVS+YFS FGPVQDVRIPYQQ
Sbjct: 136 LGIWRPERIDLS----ATACPASRQIYLTFPADSIFREEDVSDYFSTFGPVQDVRIPYQQ 191
Query: 385 KRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDRYR 432
KRMFGFVTF+Y ETVK IL+KGNPHFVC +RVLVKPYKEKGKVPD+ +
Sbjct: 192 KRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEKGKVPDKTK 239
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/61 (81%), Positives = 56/61 (91%)
Query: 1 MDSYEATRIVFSRIQNLDPENAAKIMGVLLLQDHGEKEMIRLAFGPEALLHSVIIKARKE 60
MD YEATRIV SRIQNLDP NA+KI+G+LLLQDHGEKEMIRLAFGP+ LLHSVI KA+K+
Sbjct: 1 MDVYEATRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKD 60
Query: 61 L 61
L
Sbjct: 61 L 61
>AT3G63450.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:23427191-23428864 REVERSE LENGTH=404
Length = 404
Score = 181 bits (460), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 101/168 (60%), Positives = 113/168 (67%), Gaps = 17/168 (10%)
Query: 265 ELLRSKSVQQQRLAAATSQLMASSTFPYSSKCMNXXXXXXXXXXXXXXXXXXMMSEDLHK 324
E+LRS SV RLA + +P+S K +N MM +DLHK
Sbjct: 89 EVLRSNSVPP-RLANQFT------GYPFSPKGVNLQQSEAQRAAAL------MMGDDLHK 135
Query: 325 FGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQQ 384
G R ER D S PASRQIYLTFPADS FREEDVS+YFS FGPVQDVRIPYQQ
Sbjct: 136 LGIWRPERIDLS----ATACPASRQIYLTFPADSIFREEDVSDYFSTFGPVQDVRIPYQQ 191
Query: 385 KRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDRYR 432
KRMFGFVTF+Y ETVK IL+KGNPHFVC +RVLVKPYKEKGKVPD+ +
Sbjct: 192 KRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEKGKVPDKTK 239
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/61 (81%), Positives = 56/61 (91%)
Query: 1 MDSYEATRIVFSRIQNLDPENAAKIMGVLLLQDHGEKEMIRLAFGPEALLHSVIIKARKE 60
MD YEATRIV SRIQNLDP NA+KI+G+LLLQDHGEKEMIRLAFGP+ LLHSVI KA+K+
Sbjct: 1 MDVYEATRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKD 60
Query: 61 L 61
L
Sbjct: 61 L 61
>AT1G51520.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:19106789-19109093 FORWARD LENGTH=513
Length = 513
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 130/247 (52%), Gaps = 61/247 (24%)
Query: 196 HRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFXXXXXXXXXXXXIVGSPS 255
H+RS S NDAC SE+P G G C F +G +G + GSPS
Sbjct: 157 HKRSFSANDACFESEEPWFG-GGNGCHQFPQGGLVDGFGS------------SGVFGSPS 203
Query: 256 KIEMMDQCHELLRSKSVQQQRLAAATSQLMASSTFP---------YSSKCMNXXXXXXXX 306
+++ M ++R K QQ+ + AA Q MA+ P + +C N
Sbjct: 204 EMDYM--LEGMMRMKLAQQKSMVAA--QFMAACGSPMLHRHGSGHFGEECGNY------- 252
Query: 307 XXXXXXXXXXMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVS 366
F + R ER D S+QIYLTFP++S+F +EDVS
Sbjct: 253 ------------------FSQGRHERED----------SVSKQIYLTFPSESSFTDEDVS 284
Query: 367 NYFSIFGPVQDVRIPYQQKRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGK 426
YF FG V DVRIPYQQ+RM+GFVTF AETV+ IL++GNPHF+CD+RVLVKPYKEKGK
Sbjct: 285 TYFRDFGLVDDVRIPYQQQRMYGFVTFAKAETVRTILARGNPHFICDSRVLVKPYKEKGK 344
Query: 427 VPDRYRQ 433
+ + +Q
Sbjct: 345 ILQKRQQ 351
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 46/63 (73%)
Query: 1 MDSYEATRIVFSRIQNLDPENAAKIMGVLLLQDHGEKEMIRLAFGPEALLHSVIIKARKE 60
MD + T I+FS+I+ + ENA++++ LLQD ++++IR+AFGP++L+ + KA+ +
Sbjct: 1 MDPGDPTSIIFSKIRTFELENASRVIDYFLLQDMEQRDLIRIAFGPDSLIQTFCQKAKVD 60
Query: 61 LGF 63
LGF
Sbjct: 61 LGF 63
>AT1G51520.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:19106789-19108533 FORWARD LENGTH=414
Length = 414
Score = 158 bits (400), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 130/247 (52%), Gaps = 61/247 (24%)
Query: 196 HRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFXXXXXXXXXXXXIVGSPS 255
H+RS S NDAC SE+P G G C F +G +G + GSPS
Sbjct: 157 HKRSFSANDACFESEEPWFG-GGNGCHQFPQGGLVDGFGS------------SGVFGSPS 203
Query: 256 KIEMMDQCHELLRSKSVQQQRLAAATSQLMASSTFP---------YSSKCMNXXXXXXXX 306
+++ M ++R K QQ+ + AA Q MA+ P + +C N
Sbjct: 204 EMDYM--LEGMMRMKLAQQKSMVAA--QFMAACGSPMLHRHGSGHFGEECGNY------- 252
Query: 307 XXXXXXXXXXMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVS 366
F + R ER D S+QIYLTFP++S+F +EDVS
Sbjct: 253 ------------------FSQGRHERED----------SVSKQIYLTFPSESSFTDEDVS 284
Query: 367 NYFSIFGPVQDVRIPYQQKRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGK 426
YF FG V DVRIPYQQ+RM+GFVTF AETV+ IL++GNPHF+CD+RVLVKPYKEKGK
Sbjct: 285 TYFRDFGLVDDVRIPYQQQRMYGFVTFAKAETVRTILARGNPHFICDSRVLVKPYKEKGK 344
Query: 427 VPDRYRQ 433
+ + +Q
Sbjct: 345 ILQKRQQ 351
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 46/63 (73%)
Query: 1 MDSYEATRIVFSRIQNLDPENAAKIMGVLLLQDHGEKEMIRLAFGPEALLHSVIIKARKE 60
MD + T I+FS+I+ + ENA++++ LLQD ++++IR+AFGP++L+ + KA+ +
Sbjct: 1 MDPGDPTSIIFSKIRTFELENASRVIDYFLLQDMEQRDLIRIAFGPDSLIQTFCQKAKVD 60
Query: 61 LGF 63
LGF
Sbjct: 61 LGF 63
>AT3G21100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7400426-7401870 FORWARD LENGTH=296
Length = 296
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 66/87 (75%), Positives = 82/87 (94%)
Query: 344 NPASRQIYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYAETVKLIL 403
N AS+QIYLTFPADS+F +EDVSNYF FGPVQDVRIPYQQKRMFGFVTF+++ETV++IL
Sbjct: 8 NSASKQIYLTFPADSSFTDEDVSNYFGNFGPVQDVRIPYQQKRMFGFVTFLHSETVRIIL 67
Query: 404 SKGNPHFVCDARVLVKPYKEKGKVPDR 430
++GNPHF+CD+RVLVKPYKEKG++ ++
Sbjct: 68 ARGNPHFICDSRVLVKPYKEKGRILEK 94
>AT2G05160.1 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr2:1859011-1860931 REVERSE
LENGTH=536
Length = 536
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/110 (60%), Positives = 83/110 (75%), Gaps = 5/110 (4%)
Query: 317 MMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQ 376
+++ED KF ERN+ G + SRQIYLTFPA+S+F E DVS YF+ +G V+
Sbjct: 291 ILAEDASKFVEYTGERNEH-----GAILAGSRQIYLTFPAESSFTEHDVSIYFTSYGHVE 345
Query: 377 DVRIPYQQKRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGK 426
DVRIP QQKRM+GFVTF +ETVK IL+KGNPHF+C+ARVLVKPY+EK +
Sbjct: 346 DVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLVKPYREKSR 395
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 1 MDSYEATRIVFSRIQNLDPENAAKIMG-VLLLQDHGEKEMIRLAFGPEALLHSVIIKARK 59
M+ E+ +V +RIQ L+PENAAKI G +LL+Q++G ++MIRLAF P++++ SVI +
Sbjct: 1 MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKY 60
Query: 60 ELG 62
EL
Sbjct: 61 ELA 63
>AT3G52980.1 | Symbols: | Zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein |
chr3:19645660-19646962 FORWARD LENGTH=381
Length = 381
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 104/209 (49%), Gaps = 34/209 (16%)
Query: 219 KPCLYFARGYCKNGTSCRFXXXXXXXXXXXXIVGSPSKIEMMD-QCHELLRSK------- 270
K C YF +G+CK+G +C V SP +E ++ + ELL+S+
Sbjct: 168 KICHYFNKGFCKHGNNCH------NNLSDEEHVVSPGSLEKLEREIIELLKSRRGAPISI 221
Query: 271 -------------SVQQQRLAAATSQLMASSTFPYSSKCMNXXXXXXXXXXXXXXXXXXM 317
S+Q + SQ + F + K + +
Sbjct: 222 AFLPMMYHEKYGRSLQAEGYLTE-SQRHGKAGFSLT-KLLARLKNTIRLIDRPHGQHSVI 279
Query: 318 MSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQD 377
++ED+ KF ER++ G + SRQ+YLTFPA+S+F E DVSNYFS GPV+D
Sbjct: 280 LAEDVSKFVEYTGERSEH-----GAILAGSRQVYLTFPAESSFTEHDVSNYFSEVGPVED 334
Query: 378 VRIPYQQKRMFGFVTFVYAETVKLILSKG 406
VRIP QQKRM+GFVTFVY ETVK IL+K
Sbjct: 335 VRIPCQQKRMYGFVTFVYMETVKRILAKA 363
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 1 MDSYEATRIVFSRIQNLDPENAAKIMG-VLLLQDHGEKEMIRLAFGPEALLHSVIIKARK 59
M+ EA +V +RI L+PENA+KI+G +LL+QD +++MIRLAF P++++ S+I +
Sbjct: 1 MNFTEAMNVVHNRIHQLEPENASKIIGYLLLMQDQNDRDMIRLAFCPDSVMRSMINCVKC 60
Query: 60 ELG 62
EL
Sbjct: 61 ELA 63
>AT1G51530.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:19109854-19112152 FORWARD LENGTH=403
Length = 403
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 42/60 (70%)
Query: 359 TFREEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYAETVKLILSKGNPHFVCDARVLV 418
+F ++ VS YF FGPV VRIP Q+++++GFV+F AETV IL + NPH + ++ V V
Sbjct: 185 SFTDQHVSTYFGNFGPVLSVRIPNQKEQVYGFVSFANAETVTTILDQENPHLIGESPVNV 244
>AT1G51530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:19109854-19112152 FORWARD LENGTH=391
Length = 391
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 372 FGPVQDVRIPYQQKRMFGFVTFVYAETVKLILSKGNPHFVCDARVLV 418
FGPV VRIP Q+++++GFV+F AETV IL + NPH + ++ V V
Sbjct: 186 FGPVLSVRIPNQKEQVYGFVSFANAETVTTILDQENPHLIGESPVNV 232