Miyakogusa Predicted Gene
- Lj3g3v3652410.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3652410.1 tr|Q3L9F4|Q3L9F4_RHOE4 Conserved hypothetical
membrane protein OS=Rhodococcus erythropolis (strain
P,33.78,4.7,seg,NULL,CUFF.46246.1
(430 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G51950.2 | Symbols: | Zinc finger (CCCH-type) family protein... 244 9e-65
AT3G51950.1 | Symbols: | Zinc finger (CCCH-type) family protein... 244 9e-65
AT3G21100.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 213 2e-55
AT3G63450.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 210 2e-54
AT3G63450.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 210 2e-54
AT3G63450.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 210 2e-54
AT5G12440.3 | Symbols: | CCCH-type zinc fingerfamily protein wi... 209 3e-54
AT5G12440.2 | Symbols: | CCCH-type zinc fingerfamily protein wi... 209 3e-54
AT5G12440.1 | Symbols: | CCCH-type zinc fingerfamily protein wi... 209 3e-54
AT3G21100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 202 4e-52
AT1G51520.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 176 2e-44
AT1G51520.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 172 6e-43
AT2G05160.1 | Symbols: | CCCH-type zinc fingerfamily protein wi... 137 2e-32
AT3G52980.1 | Symbols: | Zinc finger (CCCH-type) family protein... 107 1e-23
AT1G51530.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 2e-12
AT1G51530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 1e-09
>AT3G51950.2 | Symbols: | Zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein |
chr3:19278244-19280407 REVERSE LENGTH=540
Length = 540
Score = 244 bits (623), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 153/273 (56%), Positives = 175/273 (64%), Gaps = 37/273 (13%)
Query: 7 ELLRSKSVQQQRLAAATSQLMASSTFP-YSSKCMNXXXXXXXXXXXXXXXXXXMMSEDLH 65
ELLRS SV RLA M S+ P +S+K +N M+ ++L
Sbjct: 187 ELLRSNSVPP-RLA---HHFMTRSSLPSFSTKGVNLQQNDVQRAAAAL-----MIGDELQ 237
Query: 66 KFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQ 125
K GR R ER D S M PASRQIYLTFPADS FREEDVSNYFS FGPVQDVRIPYQ
Sbjct: 238 KLGRWRPERIDLS----AMACPASRQIYLTFPADSRFREEDVSNYFSTFGPVQDVRIPYQ 293
Query: 126 QKRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDR-KQQQQVDRDFSP 184
QKRMFGFVTFVY ETVK IL+KGNPHFVCD+RVLVKPYKEKGKVPD+ + Q +R+ S
Sbjct: 294 QKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYKEKGKVPDKYRTNQTTERELS- 352
Query: 185 CGTPTGLDAREQYDLNLGGRMFY-NTQDMLWRRKXXXXXXXXXXXXXXSRRLMGLQLLDI 243
PTGLD+ + D+ LGGR FY NTQD+LWR K SRRLM LQLLD+
Sbjct: 353 ---PTGLDSSPR-DV-LGGRGFYNNTQDVLWRSK-----FEEEILELQSRRLMNLQLLDV 402
Query: 244 KKQHQRAFSTGSPIPSPT--HSPNMFNQNLVLP 274
KK Q + SPT HSPN F+Q+L+ P
Sbjct: 403 KKHFQ--------LNSPTNIHSPNPFSQSLISP 427
>AT3G51950.1 | Symbols: | Zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein |
chr3:19278244-19280407 REVERSE LENGTH=540
Length = 540
Score = 244 bits (623), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 153/273 (56%), Positives = 175/273 (64%), Gaps = 37/273 (13%)
Query: 7 ELLRSKSVQQQRLAAATSQLMASSTFP-YSSKCMNXXXXXXXXXXXXXXXXXXMMSEDLH 65
ELLRS SV RLA M S+ P +S+K +N M+ ++L
Sbjct: 187 ELLRSNSVPP-RLA---HHFMTRSSLPSFSTKGVNLQQNDVQRAAAAL-----MIGDELQ 237
Query: 66 KFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQ 125
K GR R ER D S M PASRQIYLTFPADS FREEDVSNYFS FGPVQDVRIPYQ
Sbjct: 238 KLGRWRPERIDLS----AMACPASRQIYLTFPADSRFREEDVSNYFSTFGPVQDVRIPYQ 293
Query: 126 QKRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDR-KQQQQVDRDFSP 184
QKRMFGFVTFVY ETVK IL+KGNPHFVCD+RVLVKPYKEKGKVPD+ + Q +R+ S
Sbjct: 294 QKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYKEKGKVPDKYRTNQTTERELS- 352
Query: 185 CGTPTGLDAREQYDLNLGGRMFY-NTQDMLWRRKXXXXXXXXXXXXXXSRRLMGLQLLDI 243
PTGLD+ + D+ LGGR FY NTQD+LWR K SRRLM LQLLD+
Sbjct: 353 ---PTGLDSSPR-DV-LGGRGFYNNTQDVLWRSK-----FEEEILELQSRRLMNLQLLDV 402
Query: 244 KKQHQRAFSTGSPIPSPT--HSPNMFNQNLVLP 274
KK Q + SPT HSPN F+Q+L+ P
Sbjct: 403 KKHFQ--------LNSPTNIHSPNPFSQSLISP 427
>AT3G21100.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7399162-7401870 FORWARD LENGTH=602
Length = 602
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 140/363 (38%), Positives = 194/363 (53%), Gaps = 38/363 (10%)
Query: 4 QCHELLRSKSVQQQRLAAATSQLMASSTFPYS-SKCMNXXXXXXXXXXXXXXXXXXMMSE 62
Q E++R K Q+QR+AAA Q +A++ P S K +N E
Sbjct: 237 QQEEIVRMKMAQRQRMAAA--QYLAATGSPMSYEKGLNFLLHQRNAHRSGAG----QFGE 290
Query: 63 DLHKFGR-SRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQDVR 121
+ + FG R ER++F + N AS+QIYLTFPADS+F +EDVSNYF FGPVQDVR
Sbjct: 291 EGYWFGSPGRHERDEF-MGMGDKSNSASKQIYLTFPADSSFTDEDVSNYFGNFGPVQDVR 349
Query: 122 IPYQQKRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDRK----QQQQ 177
IPYQQKRMFGFVTF+++ETV++IL++GNPHF+CD+RVLVKPYKEKG++ +++ QQ
Sbjct: 350 IPYQQKRMFGFVTFLHSETVRIILARGNPHFICDSRVLVKPYKEKGRILEKRQQQQLLQQ 409
Query: 178 VDR-DFSPCGTPTGLDAREQYDLNLGGRMFYNTQDMLWRRKXXXXXXXXXXXXXXSRRLM 236
++R +FSP +P+G+D+R+ +D +L RMF NTQ+M+ R+ RR +
Sbjct: 410 MERGNFSPGSSPSGMDSRDLFDSHLAPRMFSNTQEMM--RRKAEQADLQQAIEFQRRRFL 467
Query: 237 GLQLLDIKKQ----HQRAFSTGSPIPSPTHSPNMFNQNLVLPSFHRXXXXXXXXXXXXXX 292
LQL D+ + HQR+ S GSP+ H NQ+++ S
Sbjct: 468 SLQLPDMDSESFLHHQRSLSIGSPV----HFSPRVNQSMLFRS--------------EST 509
Query: 293 XXTVCASVGQQIXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDLQECLEHNLPDSPFASPT 352
V G + LE+ LPDS FASP+
Sbjct: 510 SDEVFEGNGDSGHQSEATRAFLSDTGHNISQERGYNSHLNKGQETSLENTLPDSFFASPS 569
Query: 353 KAG 355
K G
Sbjct: 570 KTG 572
>AT3G63450.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:23427191-23428864 REVERSE LENGTH=404
Length = 404
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 125/245 (51%), Positives = 146/245 (59%), Gaps = 41/245 (16%)
Query: 7 ELLRSKSVQQQRLAAATSQLMASSTFPYSSKCMNXXXXXXXXXXXXXXXXXXMMSEDLHK 66
E+LRS SV RLA + +P+S K +N MM +DLHK
Sbjct: 89 EVLRSNSVPP-RLANQFT------GYPFSPKGVNLQQSEAQRAAAL------MMGDDLHK 135
Query: 67 FGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQQ 126
G R ER D S PASRQIYLTFPADS FREEDVS+YFS FGPVQDVRIPYQQ
Sbjct: 136 LGIWRPERIDLS----ATACPASRQIYLTFPADSIFREEDVSDYFSTFGPVQDVRIPYQQ 191
Query: 127 KRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDRKQQQQVDRDFSPCG 186
KRMFGFVTF+Y ETVK IL+KGNPHFVC +RVLVKPYKEKGKVPD+ +
Sbjct: 192 KRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEKGKVPDKTKP----------- 240
Query: 187 TPTGLDAREQYDLNLGGRMFYNTQDMLWRRKXXXXXXXXXXXXXXSRRLMGLQLLDIKKQ 246
+R+ D LGGR F+ +D+LW+R+ S RLM LQLLD++KQ
Sbjct: 241 ------SRDIMDFQLGGRAFH--EDLLWKRR-----FEERALELQSTRLMNLQLLDVEKQ 287
Query: 247 HQRAF 251
Q F
Sbjct: 288 FQLNF 292
>AT3G63450.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:23427191-23428864 REVERSE LENGTH=404
Length = 404
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 125/245 (51%), Positives = 146/245 (59%), Gaps = 41/245 (16%)
Query: 7 ELLRSKSVQQQRLAAATSQLMASSTFPYSSKCMNXXXXXXXXXXXXXXXXXXMMSEDLHK 66
E+LRS SV RLA + +P+S K +N MM +DLHK
Sbjct: 89 EVLRSNSVPP-RLANQFT------GYPFSPKGVNLQQSEAQRAAAL------MMGDDLHK 135
Query: 67 FGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQQ 126
G R ER D S PASRQIYLTFPADS FREEDVS+YFS FGPVQDVRIPYQQ
Sbjct: 136 LGIWRPERIDLS----ATACPASRQIYLTFPADSIFREEDVSDYFSTFGPVQDVRIPYQQ 191
Query: 127 KRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDRKQQQQVDRDFSPCG 186
KRMFGFVTF+Y ETVK IL+KGNPHFVC +RVLVKPYKEKGKVPD+ +
Sbjct: 192 KRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEKGKVPDKTKP----------- 240
Query: 187 TPTGLDAREQYDLNLGGRMFYNTQDMLWRRKXXXXXXXXXXXXXXSRRLMGLQLLDIKKQ 246
+R+ D LGGR F+ +D+LW+R+ S RLM LQLLD++KQ
Sbjct: 241 ------SRDIMDFQLGGRAFH--EDLLWKRR-----FEERALELQSTRLMNLQLLDVEKQ 287
Query: 247 HQRAF 251
Q F
Sbjct: 288 FQLNF 292
>AT3G63450.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:23427191-23428864 REVERSE LENGTH=406
Length = 406
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 125/245 (51%), Positives = 147/245 (60%), Gaps = 39/245 (15%)
Query: 7 ELLRSKSVQQQRLAAATSQLMASSTFPYSSKCMNXXXXXXXXXXXXXXXXXXMMSEDLHK 66
E+LRS SV RLA + +P+S K +N MM +DLHK
Sbjct: 89 EVLRSNSVPP-RLANQFT------GYPFSPKGVNLQQSEAQRAAAL------MMGDDLHK 135
Query: 67 FGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQQ 126
G R ER D S PASRQIYLTFPADS FREEDVS+YFS FGPVQDVRIPYQQ
Sbjct: 136 LGIWRPERIDLS----ATACPASRQIYLTFPADSIFREEDVSDYFSTFGPVQDVRIPYQQ 191
Query: 127 KRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDRKQQQQVDRDFSPCG 186
KRMFGFVTF+Y ETVK IL+KGNPHFVC +RVLVKPYKEKGKVPD+ + +
Sbjct: 192 KRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEKGKVPDKYRTKP--------- 242
Query: 187 TPTGLDAREQYDLNLGGRMFYNTQDMLWRRKXXXXXXXXXXXXXXSRRLMGLQLLDIKKQ 246
+R+ D LGGR F+ +D+LW+R+ S RLM LQLLD++KQ
Sbjct: 243 ------SRDIMDFQLGGRAFH--EDLLWKRR-----FEERALELQSTRLMNLQLLDVEKQ 289
Query: 247 HQRAF 251
Q F
Sbjct: 290 FQLNF 294
>AT5G12440.3 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr5:4035891-4038604 REVERSE
LENGTH=650
Length = 650
Score = 209 bits (532), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 106/195 (54%), Positives = 139/195 (71%), Gaps = 11/195 (5%)
Query: 71 RLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQQKRMF 130
RLER + +++ N ASRQIYLTFPADSTF++EDV+ YFS+FG VQDVRIPYQQKRMF
Sbjct: 338 RLERMELAMHLGDQSNSASRQIYLTFPADSTFKDEDVATYFSLFGTVQDVRIPYQQKRMF 397
Query: 131 GFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDRK----QQQQVDR-DFSPC 185
GFV+F + ETVK++L++GNPHF+CD+RVLVKPYKEKGKV D+K QQQ++R ++SPC
Sbjct: 398 GFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKKQQQLLQQQIERGNYSPC 457
Query: 186 GTPTGLDAREQYDLNLGGRMFYNTQDMLWRRKXXXXXXXXXXXXXXSRRLMGLQLLDIKK 245
+P+G+D REQ D +LG +M Y ++M+ R+ RR + LQL + K
Sbjct: 458 SSPSGIDPREQSDFHLGSKMLYERREMM--RRKIEQADLLRAIELERRRFINLQLPEFKN 515
Query: 246 ----QHQRAFSTGSP 256
H R+FS GSP
Sbjct: 516 SVTLNHHRSFSVGSP 530
>AT5G12440.2 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr5:4035891-4038604 REVERSE
LENGTH=650
Length = 650
Score = 209 bits (532), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 106/195 (54%), Positives = 139/195 (71%), Gaps = 11/195 (5%)
Query: 71 RLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQQKRMF 130
RLER + +++ N ASRQIYLTFPADSTF++EDV+ YFS+FG VQDVRIPYQQKRMF
Sbjct: 338 RLERMELAMHLGDQSNSASRQIYLTFPADSTFKDEDVATYFSLFGTVQDVRIPYQQKRMF 397
Query: 131 GFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDRK----QQQQVDR-DFSPC 185
GFV+F + ETVK++L++GNPHF+CD+RVLVKPYKEKGKV D+K QQQ++R ++SPC
Sbjct: 398 GFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKKQQQLLQQQIERGNYSPC 457
Query: 186 GTPTGLDAREQYDLNLGGRMFYNTQDMLWRRKXXXXXXXXXXXXXXSRRLMGLQLLDIKK 245
+P+G+D REQ D +LG +M Y ++M+ R+ RR + LQL + K
Sbjct: 458 SSPSGIDPREQSDFHLGSKMLYERREMM--RRKIEQADLLRAIELERRRFINLQLPEFKN 515
Query: 246 ----QHQRAFSTGSP 256
H R+FS GSP
Sbjct: 516 SVTLNHHRSFSVGSP 530
>AT5G12440.1 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr5:4035891-4038604 REVERSE
LENGTH=650
Length = 650
Score = 209 bits (532), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 106/195 (54%), Positives = 139/195 (71%), Gaps = 11/195 (5%)
Query: 71 RLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQQKRMF 130
RLER + +++ N ASRQIYLTFPADSTF++EDV+ YFS+FG VQDVRIPYQQKRMF
Sbjct: 338 RLERMELAMHLGDQSNSASRQIYLTFPADSTFKDEDVATYFSLFGTVQDVRIPYQQKRMF 397
Query: 131 GFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDRK----QQQQVDR-DFSPC 185
GFV+F + ETVK++L++GNPHF+CD+RVLVKPYKEKGKV D+K QQQ++R ++SPC
Sbjct: 398 GFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKKQQQLLQQQIERGNYSPC 457
Query: 186 GTPTGLDAREQYDLNLGGRMFYNTQDMLWRRKXXXXXXXXXXXXXXSRRLMGLQLLDIKK 245
+P+G+D REQ D +LG +M Y ++M+ R+ RR + LQL + K
Sbjct: 458 SSPSGIDPREQSDFHLGSKMLYERREMM--RRKIEQADLLRAIELERRRFINLQLPEFKN 515
Query: 246 ----QHQRAFSTGSP 256
H R+FS GSP
Sbjct: 516 SVTLNHHRSFSVGSP 530
>AT3G21100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7400426-7401870 FORWARD LENGTH=296
Length = 296
Score = 202 bits (514), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 99/181 (54%), Positives = 134/181 (74%), Gaps = 11/181 (6%)
Query: 86 NPASRQIYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYAETVKLIL 145
N AS+QIYLTFPADS+F +EDVSNYF FGPVQDVRIPYQQKRMFGFVTF+++ETV++IL
Sbjct: 8 NSASKQIYLTFPADSSFTDEDVSNYFGNFGPVQDVRIPYQQKRMFGFVTFLHSETVRIIL 67
Query: 146 SKGNPHFVCDARVLVKPYKEKGKVPDRK----QQQQVDR-DFSPCGTPTGLDAREQYDLN 200
++GNPHF+CD+RVLVKPYKEKG++ +++ QQ++R +FSP +P+G+D+R+ +D +
Sbjct: 68 ARGNPHFICDSRVLVKPYKEKGRILEKRQQQQLLQQMERGNFSPGSSPSGMDSRDLFDSH 127
Query: 201 LGGRMFYNTQDMLWRRKXXXXXXXXXXXXXXSRRLMGLQLLDIKKQ----HQRAFSTGSP 256
L RMF NTQ+M+ R+ RR + LQL D+ + HQR+ S GSP
Sbjct: 128 LAPRMFSNTQEMM--RRKAEQADLQQAIEFQRRRFLSLQLPDMDSESFLHHQRSLSIGSP 185
Query: 257 I 257
+
Sbjct: 186 V 186
>AT1G51520.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:19106789-19109093 FORWARD LENGTH=513
Length = 513
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 112/296 (37%), Positives = 151/296 (51%), Gaps = 64/296 (21%)
Query: 67 FGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQQ 126
F + R ER D S+QIYLTFP++S+F +EDVS YF FG V DVRIPYQQ
Sbjct: 253 FSQGRHERED----------SVSKQIYLTFPSESSFTDEDVSTYFRDFGLVDDVRIPYQQ 302
Query: 127 KRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDRKQQQQVDR-----D 181
+RM+GFVTF AETV+ IL++GNPHF+CD+RVLVKPYKEKGK+ ++QQQQ+ +
Sbjct: 303 QRMYGFVTFAKAETVRTILARGNPHFICDSRVLVKPYKEKGKILQKRQQQQLHELLERGN 362
Query: 182 FSPCGTPTGLDAREQYDLNLGGRMF-YNTQDMLWRRKXXXXXXXXXXXXXXSRRLMGLQL 240
+SP +P+G D+RE Y+ LG RMF TQ+ML R+ +
Sbjct: 363 YSPSSSPSGKDSRELYECRLGPRMFSKKTQEMLRRK---------------------TEQ 401
Query: 241 LDIKKQHQRAFSTGSPIPSPTHSPNMFNQNLVLPSFHRXXXXXXXXXXXXXXXXTVCASV 300
D++ +R+ S G SP+H P FN +L+ S +
Sbjct: 402 ADLQHAIERSPSIG----SPSHFPPRFNHSLLFQS----------------------GNN 435
Query: 301 GQQIXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDLQEC-LEHNLPDSPFASPTKAG 355
++I + QE LE+ LPDS F SP K+G
Sbjct: 436 NEEIMEGDSDRSEKDLQQVATSNEERGYNNGFYKGQETSLENTLPDSLFGSPKKSG 491
>AT1G51520.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:19106789-19108533 FORWARD LENGTH=414
Length = 414
Score = 172 bits (435), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 111/156 (71%), Gaps = 16/156 (10%)
Query: 67 FGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQQ 126
F + R ER D S+QIYLTFP++S+F +EDVS YF FG V DVRIPYQQ
Sbjct: 253 FSQGRHERED----------SVSKQIYLTFPSESSFTDEDVSTYFRDFGLVDDVRIPYQQ 302
Query: 127 KRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDRKQQQQVDR-----D 181
+RM+GFVTF AETV+ IL++GNPHF+CD+RVLVKPYKEKGK+ ++QQQQ+ +
Sbjct: 303 QRMYGFVTFAKAETVRTILARGNPHFICDSRVLVKPYKEKGKILQKRQQQQLHELLERGN 362
Query: 182 FSPCGTPTGLDAREQYDLNLGGRMF-YNTQDMLWRR 216
+SP +P+G D+RE Y+ LG RMF TQ+ML R+
Sbjct: 363 YSPSSSPSGKDSRELYECRLGPRMFSKKTQEMLRRK 398
>AT2G05160.1 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr2:1859011-1860931 REVERSE
LENGTH=536
Length = 536
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/110 (60%), Positives = 83/110 (75%), Gaps = 5/110 (4%)
Query: 59 MMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQ 118
+++ED KF ERN+ G + SRQIYLTFPA+S+F E DVS YF+ +G V+
Sbjct: 291 ILAEDASKFVEYTGERNEH-----GAILAGSRQIYLTFPAESSFTEHDVSIYFTSYGHVE 345
Query: 119 DVRIPYQQKRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGK 168
DVRIP QQKRM+GFVTF +ETVK IL+KGNPHF+C+ARVLVKPY+EK +
Sbjct: 346 DVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLVKPYREKSR 395
>AT3G52980.1 | Symbols: | Zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein |
chr3:19645660-19646962 FORWARD LENGTH=381
Length = 381
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 66/90 (73%), Gaps = 5/90 (5%)
Query: 59 MMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQ 118
+++ED+ KF ER++ G + SRQ+YLTFPA+S+F E DVSNYFS GPV+
Sbjct: 279 ILAEDVSKFVEYTGERSEH-----GAILAGSRQVYLTFPAESSFTEHDVSNYFSEVGPVE 333
Query: 119 DVRIPYQQKRMFGFVTFVYAETVKLILSKG 148
DVRIP QQKRM+GFVTFVY ETVK IL+K
Sbjct: 334 DVRIPCQQKRMYGFVTFVYMETVKRILAKA 363
>AT1G51530.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:19109854-19112152 FORWARD LENGTH=403
Length = 403
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 74/160 (46%), Gaps = 20/160 (12%)
Query: 101 TFREEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYAETVKLILSKGNPHFVCDARVLV 160
+F ++ VS YF FGPV VRIP Q+++++GFV+F AETV IL + NPH + ++ V V
Sbjct: 185 SFTDQHVSTYFGNFGPVLSVRIPNQKEQVYGFVSFANAETVTTILDQENPHLIGESPVNV 244
Query: 161 KPYKEKGKVPDRKQQQQVDRDFSPCGTPTGLDAREQYDLNLGGRMFYN-TQDMLWRRKXX 219
V R+ FS P G +R R F N T +ML R
Sbjct: 245 TAAATTAGVGWRE-------PFSVGNGPKGAMSRP--------RRFRNETHEMLQRNTEQ 289
Query: 220 XXXXXXXXXXXXSRRLMGLQLLDIKKQ----HQRAFSTGS 255
RRL LQL ++ + HQ + S GS
Sbjct: 290 ADPQQAIEVEDQIRRLSNLQLPGMENKSIHHHQPSPSIGS 329
>AT1G51530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:19109854-19112152 FORWARD LENGTH=391
Length = 391
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 66/147 (44%), Gaps = 20/147 (13%)
Query: 114 FGPVQDVRIPYQQKRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDRK 173
FGPV VRIP Q+++++GFV+F AETV IL + NPH + ++ V V V R+
Sbjct: 186 FGPVLSVRIPNQKEQVYGFVSFANAETVTTILDQENPHLIGESPVNVTAAATTAGVGWRE 245
Query: 174 QQQQVDRDFSPCGTPTGLDAREQYDLNLGGRMFYN-TQDMLWRRKXXXXXXXXXXXXXXS 232
FS P G +R R F N T +ML R
Sbjct: 246 -------PFSVGNGPKGAMSRP--------RRFRNETHEMLQRNTEQADPQQAIEVEDQI 290
Query: 233 RRLMGLQLLDIKKQ----HQRAFSTGS 255
RRL LQL ++ + HQ + S GS
Sbjct: 291 RRLSNLQLPGMENKSIHHHQPSPSIGS 317