Miyakogusa Predicted Gene

Lj3g3v3640180.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3640180.1 Non Chatacterized Hit- tr|K4BV79|K4BV79_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,40.3,6e-19,PEROXISOMAL BIOGENESIS FACTOR 11,Peroxisomal
biogenesis factor 11; seg,NULL; PEX11,Peroxisomal bioge,CUFF.46131.1
         (232 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47430.1 | Symbols: PEX11B | peroxin 11B | chr3:17480798-1748...   318   1e-87
AT1G47750.1 | Symbols: PEX11A | peroxin 11A | chr1:17569388-1757...    98   6e-21

>AT3G47430.1 | Symbols: PEX11B | peroxin 11B |
           chr3:17480798-17481692 FORWARD LENGTH=227
          Length = 227

 Score =  318 bits (816), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 161/230 (70%), Positives = 185/230 (80%), Gaps = 6/230 (2%)

Query: 3   DTVDKLVIFLAKRDGIDKLVKTFQYVSKLVNWHVEATNPDMSKRFKQWEVASGLSRKAFR 62
           DTVDKLV+FLAKRDGIDKLVKTFQYV+KL  WHVEAT P+ + RFK+WEVASGLSRKAFR
Sbjct: 4   DTVDKLVVFLAKRDGIDKLVKTFQYVAKLACWHVEATRPEAADRFKKWEVASGLSRKAFR 63

Query: 63  TGRFLTGFNALRRNPGSNNTLRLLAVLSNAGEMVYFFFDHFLWLSRIGTIDANLAKKMSY 122
           TGR LTGFNALRRNPG+   +R LAVL+N+GEMVYFFFDHFLWLSRIG+IDA LAKKMS+
Sbjct: 64  TGRSLTGFNALRRNPGATPMIRFLAVLANSGEMVYFFFDHFLWLSRIGSIDAKLAKKMSF 123

Query: 123 ISAFGEAVGYVFFIIADFILLQEGLKAXXXXXXXXXXXXXXXXXXXXXXXRIQKIRGDRI 182
           ISAFGE+ GY FFII D I +++ LK+                       +I +IRGD +
Sbjct: 124 ISAFGESFGYTFFIIIDCIFIKQRLKS------LKKLQHSTDEPKEEIGAKISEIRGDIV 177

Query: 183 MRLMAVAANVADLIIALAEIEPNPFCCHTVSLGISGLVSAWAGWYRNWPS 232
           MRLM ++ANVADL+IALAEI PNPFC HT++LGISGLVSAWAGWYRNWPS
Sbjct: 178 MRLMGISANVADLLIALAEIHPNPFCNHTITLGISGLVSAWAGWYRNWPS 227


>AT1G47750.1 | Symbols: PEX11A | peroxin 11A |
           chr1:17569388-17570134 REVERSE LENGTH=248
          Length = 248

 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 84/134 (62%), Gaps = 5/134 (3%)

Query: 3   DTVDKLVIFLAKRDGIDKLVKTFQYVSKLVNWHVEATNPDMSK---RFKQWEVASGLSRK 59
           D ++ L  +L+KRDG+DKL+K  +Y +K++     +  P+      R K +E + G+SRK
Sbjct: 16  DFLNHLETYLSKRDGVDKLLKISRYATKII--LASSLIPETRSIIPRLKSFESSVGVSRK 73

Query: 60  AFRTGRFLTGFNALRRNPGSNNTLRLLAVLSNAGEMVYFFFDHFLWLSRIGTIDANLAKK 119
           AFR G+F+   NALR +   +N   +L +++  GE +Y+F + F+WL++ G IDA  +K 
Sbjct: 74  AFRLGKFVQDINALRSSRWDSNHELVLLIIAYGGEGLYYFVEQFIWLTKSGLIDAKHSKW 133

Query: 120 MSYISAFGEAVGYV 133
           +  ISA+ E VGYV
Sbjct: 134 LQKISAWAELVGYV 147