Miyakogusa Predicted Gene

Lj3g3v3639960.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3639960.2 tr|Q93V67|Q93V67_9BRYO PpSIG1 OS=Physcomitrella
patens GN=Sig1 PE=2 SV=1,31.18,0.0000000000003,no description,NULL;
Sigma2 domain of RNA polymerase sigma factors,RNA polymerase sigma
factor, regi,CUFF.46126.2
         (300 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64860.2 | Symbols: SIGA | sigma factor A | chr1:24098497-241...   276   8e-75
AT1G64860.1 | Symbols: SIGA, SIG1, SIG2, SIGB, RPOD1 | sigma fac...   276   9e-75
AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | RNApolymera...    60   2e-09
AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATS...    58   8e-09

>AT1G64860.2 | Symbols: SIGA | sigma factor A |
           chr1:24098497-24100739 FORWARD LENGTH=498
          Length = 498

 Score =  276 bits (707), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 157/303 (51%), Positives = 198/303 (65%), Gaps = 19/303 (6%)

Query: 1   MATAAVIXXXXXXXXXXXXXXXXDIIEKLSCSSDFGSTHYQIVPAKSVTVAKKSSDYTQA 60
           MATAAVI                D+ EK    +D  S+ Y I   KS   AKK+S+Y+ +
Sbjct: 1   MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 61  FPASDRPNQSIKALKEHVDGVPAAAETWFQECDSNDLEVESSD----LGYSVEALLLLQK 116
           FP+S+R  QS KALKE VD V +  + W       +LE E  D    + +SVEA+LLLQK
Sbjct: 61  FPSSNRHTQSAKALKESVD-VASTEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQK 119

Query: 117 SMLEKQWSLSCEREVLTEHPRQEKSSKK--VAVTCSGVSARQRRINTKRKIPGKTGSAMQ 174
           SMLEK W+LS E+ V +E+P +    KK    +TCSG+SARQRRI  K+K          
Sbjct: 120 SMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKT--------- 170

Query: 175 ACDAMQMRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKE 234
               M     +S      + +GYVKGV+SE +LSH EVV+LS+KIK GL LD+HKSRLK+
Sbjct: 171 ---NMTHVKAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKD 227

Query: 235 KLGCEPSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMAD 294
           +LGCEPSD+Q+A SLKISR+EL+A  +EC LARE+LAMSNVRLVMSIAQRYDN+GAEM+D
Sbjct: 228 RLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSD 287

Query: 295 LVQ 297
           LVQ
Sbjct: 288 LVQ 290


>AT1G64860.1 | Symbols: SIGA, SIG1, SIG2, SIGB, RPOD1 | sigma factor
           A | chr1:24098497-24100746 FORWARD LENGTH=502
          Length = 502

 Score =  276 bits (707), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 158/303 (52%), Positives = 200/303 (66%), Gaps = 19/303 (6%)

Query: 1   MATAAVIXXXXXXXXXXXXXXXXDIIEKLSCSSDFGSTHYQIVPAKSVTVAKKSSDYTQA 60
           MATAAVI                D+ EK    +D  S+ Y I   KS   AKK+S+Y+ +
Sbjct: 1   MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 61  FPASDRPNQSIKALKEHVDGVPAAAETWFQECDSNDLEVESSD----LGYSVEALLLLQK 116
           FP+S+R  QS KALKE VD V +  + W       +LE E  D    + +SVEA+LLLQK
Sbjct: 61  FPSSNRHTQSAKALKESVD-VASTEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQK 119

Query: 117 SMLEKQWSLSCEREVLTEHPRQEKSSKK--VAVTCSGVSARQRRINTKRKIPGKTGSAMQ 174
           SMLEK W+LS E+ V +E+P +    KK    +TCSG+SARQRRI  K+K      + M 
Sbjct: 120 SMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKK------TNMT 173

Query: 175 ACDAMQMRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKE 234
              A      +S      + +GYVKGV+SE +LSH EVV+LS+KIK GL LD+HKSRLK+
Sbjct: 174 HVKA------VSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKD 227

Query: 235 KLGCEPSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMAD 294
           +LGCEPSD+Q+A SLKISR+EL+A  +EC LARE+LAMSNVRLVMSIAQRYDN+GAEM+D
Sbjct: 228 RLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSD 287

Query: 295 LVQ 297
           LVQ
Sbjct: 288 LVQ 290


>AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | RNApolymerase
           sigma-subunit F | chr2:15537502-15540016 REVERSE
           LENGTH=547
          Length = 547

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 61/101 (60%)

Query: 197 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 256
           ++ G  ++QLL+  E  +L   I+  L L++ K++L+ + GCEP+  + A ++ IS   L
Sbjct: 238 FLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVL 297

Query: 257 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQ 297
           ++       +RE+L  +N+RLV+ IA++Y N G    DL+Q
Sbjct: 298 KSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQ 338


>AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2
           | RNApolymerase sigma subunit 2 | chr1:2703461-2706696
           FORWARD LENGTH=572
          Length = 572

 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 8/135 (5%)

Query: 165 IPG-KTGSAMQACDAMQMRSLISPELLQNRSKGYVKGVVSE-QLLSHAEVVKLSEKIKVG 222
           IP  KTGS+ +       + L++ E+  N    Y++   S  +LL+  E  +LS  I+  
Sbjct: 235 IPSVKTGSSPKK------KRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDL 288

Query: 223 LSLDEHKSRLKEKLGCEPSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIA 282
           L L+  ++ L E+ G +P+  Q A++  + +  LR +    TL ++++  SN+RLV+SIA
Sbjct: 289 LKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIA 348

Query: 283 QRYDNMGAEMADLVQ 297
           + Y   G  + DLVQ
Sbjct: 349 KNYQGAGMNLQDLVQ 363