Miyakogusa Predicted Gene

Lj3g3v3639960.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3639960.1 Non Chatacterized Hit- tr|I1LP24|I1LP24_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.13503
PE,88.43,0,sigma70-ECF: RNA polymerase sigma factor, sigma-70,RNA
polymerase sigma-70; no description,NULL; no ,CUFF.46126.1
         (337 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64860.1 | Symbols: SIGA, SIG1, SIG2, SIGB, RPOD1 | sigma fac...   551   e-157
AT1G64860.2 | Symbols: SIGA | sigma factor A | chr1:24098497-241...   491   e-139
AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATS...   160   2e-39
AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | RNApolymera...   145   3e-35
AT5G13730.1 | Symbols: SIG4, SIGD | sigma factor 4 | chr5:442913...   142   3e-34
AT5G24120.1 | Symbols: SIGE, SIG5, ATSIG5 | sigma factor E | chr...   103   1e-22
AT3G53920.1 | Symbols: SIGC, SIG3 | RNApolymerase sigma-subunit ...   101   8e-22

>AT1G64860.1 | Symbols: SIGA, SIG1, SIG2, SIGB, RPOD1 | sigma factor
           A | chr1:24098497-24100746 FORWARD LENGTH=502
          Length = 502

 Score =  551 bits (1420), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 263/315 (83%), Positives = 296/315 (93%)

Query: 23  KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
           +GYVKGV+SE +LSH EVV+LS+KIK GL LD+HKSRLK++LGCEPSD+Q+A SLKISR+
Sbjct: 188 RGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRA 247

Query: 83  ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
           EL+A  +EC LARE+LAMSNVRLVMSIAQRYDN+GAEM+DLVQGGLIGLLRGIEKFDSSK
Sbjct: 248 ELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSK 307

Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEERGITPTIDRIA 202
           GF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHERL LIR AK RL+E+GITP+IDRIA
Sbjct: 308 GFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIA 367

Query: 203 KSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWT 262
           +SLNMSQKKVRNATEA+SKVFSLDR+AFPSLNGLPG+THH YIAD RLEN PWHG D+  
Sbjct: 368 ESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA 427

Query: 263 LKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 322
           LK+EV+KLI+ TL ERE+EIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK
Sbjct: 428 LKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 487

Query: 323 HAARKREMEAMLLKH 337
           HAARKR+MEAM+LK+
Sbjct: 488 HAARKRKMEAMILKN 502


>AT1G64860.2 | Symbols: SIGA | sigma factor A |
           chr1:24098497-24100739 FORWARD LENGTH=498
          Length = 498

 Score =  491 bits (1265), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 232/281 (82%), Positives = 262/281 (93%)

Query: 23  KGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRS 82
           +GYVKGV+SE +LSH EVV+LS+KIK GL LD+HKSRLK++LGCEPSD+Q+A SLKISR+
Sbjct: 188 RGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRA 247

Query: 83  ELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSK 142
           EL+A  +EC LARE+LAMSNVRLVMSIAQRYDN+GAEM+DLVQGGLIGLLRGIEKFDSSK
Sbjct: 248 ELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSK 307

Query: 143 GFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEERGITPTIDRIA 202
           GF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHERL LIR AK RL+E+GITP+IDRIA
Sbjct: 308 GFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIA 367

Query: 203 KSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWT 262
           +SLNMSQKKVRNATEA+SKVFSLDR+AFPSLNGLPG+THH YIAD RLEN PWHG D+  
Sbjct: 368 ESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA 427

Query: 263 LKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRI 303
           LK+EV+KLI+ TL ERE+EIIRLYYGLDKECLTWEDISKRI
Sbjct: 428 LKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRI 468


>AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2
           | RNApolymerase sigma subunit 2 | chr1:2703461-2706696
           FORWARD LENGTH=572
          Length = 572

 Score =  160 bits (404), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/327 (33%), Positives = 187/327 (57%), Gaps = 9/327 (2%)

Query: 12  LISPELLQNRSKGYVKGVVSE-QLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSD 70
           L++ E+  N    Y++   S  +LL+  E  +LS  I+  L L+  ++ L E+ G +P+ 
Sbjct: 249 LVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTF 308

Query: 71  DQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIG 130
            Q A++  + +  LR +    TL ++++  SN+RLV+SIA+ Y   G  + DLVQ G  G
Sbjct: 309 AQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 368

Query: 131 LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL- 189
           L+RG EKFD++KGFK STY +WWI+Q V ++L + SR +RLP H+ E    ++ A+ +L 
Sbjct: 369 LVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLY 428

Query: 190 EERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNR 249
            E G  P  + IA++  +S K++     +     SLD++   + N  P +     IAD  
Sbjct: 429 SETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEV----IADPE 484

Query: 250 LENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRE 308
                   + E+ ++ +++K+++ +L  RE+++IR  +G+ D    T ++I + +G+SRE
Sbjct: 485 AVTSEDILIKEF-MRQDLDKVLD-SLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRE 542

Query: 309 RVRQVGLVALEKLKHAARKREMEAMLL 335
           RVRQ+   A  KLK+  R   ++  L+
Sbjct: 543 RVRQIESSAFRKLKNKKRNNHLQQYLV 569


>AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | RNApolymerase
           sigma-subunit F | chr2:15537502-15540016 REVERSE
           LENGTH=547
          Length = 547

 Score =  145 bits (367), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 169/304 (55%), Gaps = 14/304 (4%)

Query: 25  YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
           ++ G  ++QLL+  E  +L   I+  L L++ K++L+ + GCEP+  + A ++ IS   L
Sbjct: 238 FLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVL 297

Query: 85  RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
           ++       +RE+L  +N+RLV+ IA++Y N G    DL+Q G +GL++ +EKF    G 
Sbjct: 298 KSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGC 357

Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTA-KFRLEERGITPTIDRIAK 203
           + +TY YWWIRQ + +++ +NSRT+RLP +++  L  +  A K  ++E    P+ + +A 
Sbjct: 358 RFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAG 417

Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCY---IADNRLENIPWHGVDE 260
            + +S       TE + K+    R        +  D    +     D+ +E  P   V +
Sbjct: 418 HVGVS-------TEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIE-TPTMSVGK 469

Query: 261 WTLKDEVNKLINVTLVEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALE 319
             +++ V  L+NV L  +ER II+L +G+D  +  +  +I +  GLS+ERVRQ+   AL 
Sbjct: 470 QLMRNHVRNLLNV-LSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALY 528

Query: 320 KLKH 323
           +LK 
Sbjct: 529 RLKQ 532


>AT5G13730.1 | Symbols: SIG4, SIGD | sigma factor 4 |
           chr5:4429132-4430744 REVERSE LENGTH=419
          Length = 419

 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/310 (35%), Positives = 161/310 (51%), Gaps = 31/310 (10%)

Query: 26  VKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKIS---RS 82
           V G      LS  E V+L   +K G  L        E LG    ++++ + L  S   + 
Sbjct: 114 VVGASRSGFLSRLEEVQLCLYLKEGAKL--------ENLGTSVEENEMVSVLLASGRGKK 165

Query: 83  ELRAKTIEC--TLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDS 140
           +  A  I C    ARE++     RLV+SIA  Y   G  + DL+Q G IGLLRG E+FD 
Sbjct: 166 KRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDP 225

Query: 141 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHE------RLSLIRTAKFRLEERGI 194
            +G+K+STYVYWWI+Q + RA+   SR ++LP  + E        S + T K R +    
Sbjct: 226 DRGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQ---- 281

Query: 195 TPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIP 254
            P+ + IA+ LN++   VR A E      SLDR A  S NG           D   E  P
Sbjct: 282 -PSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVA--SQNGRMTLQEIVRGPD---ETRP 335

Query: 255 WHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQV 313
              V    +K E+ +L+  +L  RE  ++ LY+GL+ E  +++E+I K + LSRERVRQ+
Sbjct: 336 EEMVKREHMKHEIEQLLG-SLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQI 394

Query: 314 GLVALEKLKH 323
             +AL+KL++
Sbjct: 395 NGIALKKLRN 404


>AT5G24120.1 | Symbols: SIGE, SIG5, ATSIG5 | sigma factor E |
           chr5:8157794-8159746 REVERSE LENGTH=517
          Length = 517

 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 152/301 (50%), Gaps = 28/301 (9%)

Query: 37  HAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSELRAKTIECTLARE 96
           HA + KL + +K   +L E K  L++ LG EP + +IA  + ++  E++ K      AR 
Sbjct: 225 HAWLFKLMQPMK---ALLEVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAARN 281

Query: 97  RLAMSNVRLVMSIAQRYDN---MGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 153
           +L   N+RLV+ +  +Y +    G +  DL Q G+ GL+  I++F+  + F++STY  +W
Sbjct: 282 KLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFW 341

Query: 154 IRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRIAKSLNMSQKKV 212
           IR  + R++  ++ T R+P  L      I  AK  L  E G  PT D + + L ++ ++ 
Sbjct: 342 IRHAIIRSMTTSNFT-RVPFGLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKITPERY 400

Query: 213 RNATEAISKVFSLD------REAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDE 266
           R    A   V SL+      +E F  +NG+  D       ++R   +    +D+      
Sbjct: 401 REVLRAAKPVLSLNSKHSVTQEEF--INGI-TDVDGVGANNSRQPALLRLALDD------ 451

Query: 267 VNKLINVTLVEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 325
               +  +L  +E  +IR  YGLD K   T  +I+  + +SRE VR+  + AL KLKH A
Sbjct: 452 ----VLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHQA 507

Query: 326 R 326
           R
Sbjct: 508 R 508


>AT3G53920.1 | Symbols: SIGC, SIG3 | RNApolymerase sigma-subunit C |
           chr3:19961041-19963820 REVERSE LENGTH=571
          Length = 571

 Score =  101 bits (251), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 154/301 (51%), Gaps = 17/301 (5%)

Query: 41  VKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSELRAKTIECTLARERLAM 100
            ++S  +K+   ++  +++L+E+ G   S    AA+  ++   L          R+ L  
Sbjct: 279 TEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVK 338

Query: 101 SNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSR 160
           S   LV+ +A+ Y  +G    DL+Q G +G+L+G E+FD ++G+K STYV +WIR+ +S 
Sbjct: 339 STRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMST 398

Query: 161 ALVENSRTLRLPTHLHERLSLIRTAKFRLE-ERGITPTID-RIAKSLNMSQKKVRNATEA 218
            +  ++R + +P+ +   ++ I+ A+  L+   GI    D  IAK    S KK+R A + 
Sbjct: 399 MVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQC 458

Query: 219 ISKVFSLDREAFPSLNGLPGDTHHC----YIADNRLENIPWHGVDEWTLKDEVNKLINVT 274
           +  V S+D++         GD        +  D  +E+ P   V   + + +++ L+   
Sbjct: 459 LKVVGSIDKKV--------GDCFTTKFLEFTPDTTMES-PEEAVMRQSARRDIHDLLE-G 508

Query: 275 LVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAM 333
           L  RE++++ L YGL D    + E+I K + +S+E +R++   A+ KL+      ++   
Sbjct: 509 LEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYY 568

Query: 334 L 334
           L
Sbjct: 569 L 569