Miyakogusa Predicted Gene

Lj3g3v3639790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3639790.1 Non Chatacterized Hit- tr|B4FIQ0|B4FIQ0_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,54.22,0.0000000000001,WRC,WRC; QLQ,Glutamine-Leucine-Glutamine,
QLQ; no description,Glutamine-Leucine-Glutamine, QLQ;
FAMI,CUFF.46098.1
         (331 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13960.1 | Symbols: AtGRF5, GRF5 | growth-regulating factor 5...   159   3e-39
AT4G37740.1 | Symbols: AtGRF2, GRF2 | growth-regulating factor 2...   145   3e-35
AT2G36400.1 | Symbols: AtGRF3, GRF3 | growth-regulating factor 3...   142   3e-34
AT2G06200.1 | Symbols: AtGRF6, GRF6 | growth-regulating factor 6...   137   1e-32
AT2G22840.1 | Symbols: AtGRF1, GRF1 | growth-regulating factor 1...   130   9e-31
AT3G52910.1 | Symbols: AtGRF4, GRF4 | growth-regulating factor 4...   130   2e-30
AT5G53660.1 | Symbols: AtGRF7, GRF7 | growth-regulating factor 7...   112   4e-25
AT4G24150.1 | Symbols: AtGRF8, GRF8 | growth-regulating factor 8...    99   6e-21
AT2G45480.1 | Symbols: AtGRF9, GRF9 | growth-regulating factor 9...    90   3e-18

>AT3G13960.1 | Symbols: AtGRF5, GRF5 | growth-regulating factor 5 |
           chr3:4608526-4610160 FORWARD LENGTH=397
          Length = 397

 Score =  159 bits (402), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 90/111 (81%), Gaps = 4/111 (3%)

Query: 24  RSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQKSFD-SISHTFFQHPSLSYCSF- 81
           R PFT +QW+ELEHQALI+KYMV+G+PVPP+L+  I++S D S+      H SL +  + 
Sbjct: 14  RPPFTPTQWEELEHQALIYKYMVSGVPVPPELIFSIRRSLDTSLVSRLLPHQSLGWGCYQ 73

Query: 82  --YGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 130
             +G+K DPEPGRCRRTDGKKWRCS+EAYPDSKYCE+HMHRGRNR+RK ++
Sbjct: 74  MGFGRKPDPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSLD 124


>AT4G37740.1 | Symbols: AtGRF2, GRF2 | growth-regulating factor 2 |
           chr4:17725533-17727609 REVERSE LENGTH=535
          Length = 535

 Score =  145 bits (367), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/127 (54%), Positives = 90/127 (70%), Gaps = 4/127 (3%)

Query: 24  RSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQKSF---DSISHTFFQHPSLSYCS 80
           + PFT++QW ELE QALI+KY+ A +PVP  L++ I+KSF    S+  + F   +  +  
Sbjct: 162 KGPFTLTQWAELEQQALIYKYITANVPVPSSLLISIKKSFYPYGSLPPSSFGWGTF-HLG 220

Query: 81  FYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMTQSPSA 140
           F G  +DPEPGRCRRTDGKKWRCS++A PD KYCERH++RGR+RSRKPVE Q+     +A
Sbjct: 221 FAGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEVQSGQNQTAA 280

Query: 141 VTSLTVT 147
             S  VT
Sbjct: 281 AASKAVT 287


>AT2G36400.1 | Symbols: AtGRF3, GRF3 | growth-regulating factor 3 |
           chr2:15270300-15272617 REVERSE LENGTH=398
          Length = 398

 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 66/118 (55%), Positives = 84/118 (71%), Gaps = 7/118 (5%)

Query: 27  FTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQKSFDSISHTFFQHPSLSYCSFYG--- 83
           F+ +QWQELE QALI++YM+AG  VP +L+LPI+KS   +S ++F H  L +   Y    
Sbjct: 77  FSWAQWQELELQALIYRYMLAGAAVPQELLLPIKKSLLHLSPSYFLHHPLQHLPHYQPAW 136

Query: 84  ----KKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMTQS 137
                 +DPEPGRCRRTDGKKWRCS++ +   KYCERHMHRGRNRSRKPVE+ T   +
Sbjct: 137 YLGRAAMDPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHRGRNRSRKPVETPTTVNA 194


>AT2G06200.1 | Symbols: AtGRF6, GRF6 | growth-regulating factor 6 |
           chr2:2426340-2427255 FORWARD LENGTH=244
          Length = 244

 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/124 (59%), Positives = 88/124 (70%), Gaps = 15/124 (12%)

Query: 24  RSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQKSF------DSISHTFFQHPSLS 77
           R PFT SQW+ELE+QAL+FKY+ A +PVPP L+  I++ F       S S + F  P+LS
Sbjct: 4   RIPFTESQWEELENQALVFKYLAANMPVPPHLLFLIKRPFLFSSSSSSSSSSSFFSPTLS 63

Query: 78  -------YCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNR--SRKP 128
                  Y    G+K+D EPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRG+NR  SRKP
Sbjct: 64  PHFGWNVYEMGMGRKIDAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSSSRKP 123

Query: 129 VESQ 132
             +Q
Sbjct: 124 PPTQ 127


>AT2G22840.1 | Symbols: AtGRF1, GRF1 | growth-regulating factor 1 |
           chr2:9728841-9731141 FORWARD LENGTH=530
          Length = 530

 Score =  130 bits (328), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 65/112 (58%), Positives = 83/112 (74%), Gaps = 4/112 (3%)

Query: 24  RSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQKSF---DSISHTFFQHPSLSYCS 80
           + PF+++QW ELE QALI+KY+ A +PVP  L+L ++KSF    S+    F   S  +  
Sbjct: 131 KGPFSLTQWAELEQQALIYKYITANVPVPSSLLLSLKKSFFPYGSLPPNSFGWGSF-HLG 189

Query: 81  FYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQ 132
           F G  +DPEPGRCRRTDGKKWRCS++A PD KYCERH++RGR+RSRKPVE Q
Sbjct: 190 FSGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEGQ 241


>AT3G52910.1 | Symbols: AtGRF4, GRF4 | growth-regulating factor 4 |
           chr3:19616177-19618268 REVERSE LENGTH=380
          Length = 380

 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/112 (55%), Positives = 80/112 (71%), Gaps = 8/112 (7%)

Query: 27  FTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQKSFDSISHTFFQHPSLSYCS------ 80
           F+ +QWQELE QALI++YM+AG  VP +L+LPI+KS    S   F H  L +        
Sbjct: 83  FSWAQWQELELQALIYRYMLAGASVPQELLLPIKKSLLHQSPMHFLHHPLQHSFPHHQPS 142

Query: 81  -FYGK-KVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 130
            ++G+  +DPEPGRC+RTDGKKWRCS++     KYC+RH+HRGRNRSRKPVE
Sbjct: 143 WYWGRGAMDPEPGRCKRTDGKKWRCSRDVVAGHKYCDRHIHRGRNRSRKPVE 194


>AT5G53660.1 | Symbols: AtGRF7, GRF7 | growth-regulating factor 7 |
           chr5:21794636-21795929 FORWARD LENGTH=365
          Length = 365

 Score =  112 bits (280), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/105 (52%), Positives = 68/105 (64%), Gaps = 13/105 (12%)

Query: 26  PFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQKSFDSISHTFFQHPSLSYCSFYGKK 85
           PFT +Q +ELE QA+I+KYM+A +PVP DL++                 S S C+     
Sbjct: 59  PFTNAQLKELERQAMIYKYMIASIPVPFDLLVS-------------SPSSASPCNNKNIA 105

Query: 86  VDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 130
            D EPGRCRRTDGKKWRC+KE   + KYCE+H+HRGR RSRK VE
Sbjct: 106 GDLEPGRCRRTDGKKWRCAKEVVSNHKYCEKHLHRGRPRSRKHVE 150


>AT4G24150.1 | Symbols: AtGRF8, GRF8 | growth-regulating factor 8 |
           chr4:12535972-12539387 FORWARD LENGTH=493
          Length = 493

 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 68/140 (48%), Gaps = 33/140 (23%)

Query: 25  SPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQKSFDSISHTFFQHPSLSYCSFYG- 83
           + F+ +QW ELE Q  I+KYM+A +PVPP+L+ P  K+  S ++           S Y  
Sbjct: 148 AAFSEAQWHELERQRNIYKYMMASVPVPPELLTPFPKNHQSNTNPDVDTYRSGMFSIYAD 207

Query: 84  --------------------------------KKVDPEPGRCRRTDGKKWRCSKEAYPDS 111
                                              D EP RC+RTDGKKWRCS+   PD 
Sbjct: 208 YKNLPLSMWMTVTVAVATGGSLQLGIASSASNNTADLEPWRCKRTDGKKWRCSRNVIPDQ 267

Query: 112 KYCERHMHRGRNRSRKPVES 131
           KYCERH H+ R RSRK VES
Sbjct: 268 KYCERHTHKSRPRSRKHVES 287


>AT2G45480.1 | Symbols: AtGRF9, GRF9 | growth-regulating factor 9 |
           chr2:18745583-18747403 FORWARD LENGTH=429
          Length = 429

 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 62/105 (59%), Gaps = 4/105 (3%)

Query: 27  FTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQKSFDSISHTFFQHPSLSYCSFYG--- 83
              +Q  E   QAL+++Y+ AGL VP  LV+PI  S    S + + + S S  S  G   
Sbjct: 23  MKAAQLMEFRMQALVYRYIEAGLRVPHHLVVPIWNSLALSSSSNYNYHSSSLLSNKGVTH 82

Query: 84  -KKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRK 127
              ++ EP RCRRTDGKKWRCS       KYCERHMHRGR RSRK
Sbjct: 83  IDTLETEPTRCRRTDGKKWRCSNTVLLFEKYCERHMHRGRKRSRK 127



 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 22/116 (18%)

Query: 31  QWQELEHQALIFKYMVAGLPVPPDLVLPIQKSFDSISHTFFQHPSLSYCSFYGKKVDPEP 90
           +W+ +     +F     G+   PD VL  +  F                   G + D EP
Sbjct: 269 EWKNMNVNGGLFH----GIHFSPDTVLQERGCF----------------RLQGVETDNEP 308

Query: 91  GRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMTQSPSAVTSLTV 146
           GRCRRTDGKKWRCSK+     KYC++HMHRG  + + PV++ T +   +  + LTV
Sbjct: 309 GRCRRTDGKKWRCSKDVLSGQKYCDKHMHRGM-KKKHPVDT-TNSHENAGFSPLTV 362