Miyakogusa Predicted Gene

Lj3g3v3639580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3639580.1 Non Chatacterized Hit- tr|I3SGH6|I3SGH6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,SUBFAMILY
NOT NAMED,NULL; MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE
SUBUNIT TIM22,NULL; seg,NU,CUFF.46077.1
         (163 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10110.1 | Symbols: MEE67 | Mitochondrial import inner membra...   175   1e-44
AT1G18320.1 | Symbols:  | Mitochondrial import inner membrane tr...   162   9e-41

>AT3G10110.1 | Symbols: MEE67 | Mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein |
           chr3:3116225-3117378 FORWARD LENGTH=173
          Length = 173

 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/172 (49%), Positives = 104/172 (60%), Gaps = 9/172 (5%)

Query: 1   MADDSGQATSNEVEKP---------QIEPIRLPSVEEIRGQDIWNNCAVRXXXXXXXXXX 51
           MAD S    +     P         QI+PIR+P++EEIR Q++WNNCAVR          
Sbjct: 1   MADSSAAEPTTGASSPPVASDENSTQIQPIRMPTIEEIRAQEVWNNCAVRAVTSGVMGGG 60

Query: 52  XXXXXXXXXXALDNPIMQEEMTGRQQLIYQAKQMGRRSISSAKAFAVMGFIFSAAECVVE 111
                     ALDNPI  + MT RQQ ++ AKQMG+RS +S K FAVMG +FSAAEC+VE
Sbjct: 61  LGLMMGLFLGALDNPITHDTMTARQQFVFTAKQMGQRSWNSCKTFAVMGLVFSAAECIVE 120

Query: 112 KARAKHDMTNTAVAGCTTGGVISAKGGPRXXXXXXXXXXXXSVLIEKFLEGH 163
           KARAKHD  NTA+AGC TGG +SA+GGP+            SVLIEKF + H
Sbjct: 121 KARAKHDTVNTAIAGCVTGGSMSARGGPKAACIGCAGFATFSVLIEKFFDRH 172


>AT1G18320.1 | Symbols:  | Mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein |
           chr1:6304472-6305531 FORWARD LENGTH=142
          Length = 142

 Score =  162 bits (410), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 75/141 (53%), Positives = 92/141 (65%)

Query: 23  LPSVEEIRGQDIWNNCAVRXXXXXXXXXXXXXXXXXXXXALDNPIMQEEMTGRQQLIYQA 82
           +P++EEIR Q++WNNCAVR                    ALDNPI  + MT RQQ ++ A
Sbjct: 1   MPTIEEIRAQEVWNNCAVRAVTSGVMGGGLGLMMGLFLGALDNPITHDTMTARQQFVFTA 60

Query: 83  KQMGRRSISSAKAFAVMGFIFSAAECVVEKARAKHDMTNTAVAGCTTGGVISAKGGPRXX 142
           KQMG+RS +S K FAVMG +FSAAEC+VEKARAKHD  NTA+AGC TGG +SA+GGP+  
Sbjct: 61  KQMGQRSWNSCKTFAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGPKAA 120

Query: 143 XXXXXXXXXXSVLIEKFLEGH 163
                     SVLIEKF + H
Sbjct: 121 CIGCAGFAIFSVLIEKFFDRH 141