Miyakogusa Predicted Gene

Lj3g3v3639450.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3639450.1 tr|A9TS65|A9TS65_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,71.43,1e-18,seg,NULL,CUFF.46066.1
         (266 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08530.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   245   3e-65
AT5G09995.2 | Symbols:  | unknown protein; BEST Arabidopsis thal...   121   5e-28
AT5G09995.3 | Symbols:  | unknown protein; BEST Arabidopsis thal...   121   5e-28
AT5G09995.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   120   7e-28

>AT1G08530.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT5G09995.2); Has 140 Blast hits to 140
           proteins in 53 species: Archae - 0; Bacteria - 63;
           Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other
           Eukaryotes - 1 (source: NCBI BLink). |
           chr1:2701252-2702952 FORWARD LENGTH=257
          Length = 257

 Score =  245 bits (625), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 121/166 (72%), Positives = 141/166 (84%), Gaps = 2/166 (1%)

Query: 92  PVSKFSFTDQAFFLITFIACTTSVTFTSLVFAAVPTLFAMRNAAISLSKLADTAREELPS 151
           P++K S +DQAF L+ FI CTTSV FTSLV  A+PTL AM  AA S +KLADTAR+ELPS
Sbjct: 94  PLAKLSLSDQAFLLLAFIVCTTSVAFTSLVITAIPTLVAMGRAATSFAKLADTARKELPS 153

Query: 152 TMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQALQAAEAGIKQIGSMAQEQTMSMIE 211
           T+AA+RLSGMEISDLTLELSDLSQ+I DG+NKSA+A+QAAEAGIKQIG++AQ+QT+SMIE
Sbjct: 154 TLAAVRLSGMEISDLTLELSDLSQDITDGINKSAKAVQAAEAGIKQIGTLAQQQTLSMIE 213

Query: 212 ERANLPIISLQPVVVGAARKTSRAVGRATKSLMNIISGKEGTSEYD 257
           ERANLP ISLQPVV GAA KTS A+G ATK LMNII+G  G  + D
Sbjct: 214 ERANLPEISLQPVVAGAAEKTSHAIGSATKRLMNIITG--GNKDED 257


>AT5G09995.2 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G08530.1); Has 35333 Blast hits to 34131
           proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr5:3125185-3126302 REVERSE LENGTH=257
          Length = 257

 Score =  121 bits (304), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 4/158 (2%)

Query: 93  VSKFSFTDQAFFLITFIACTTSVTFTSLVFAAVPTLFAMRNAAISLSKLADTAREELPST 152
           +S+++FT + F L+  +AC T+++ + L FAA+PTL A + AA SL KL D  REELP T
Sbjct: 86  LSQWTFTQKHFVLLNVVACVTAISASWLFFAAIPTLLAFKKAAESLEKLLDVTREELPDT 145

Query: 153 MAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQALQAAEAGIKQIGSMAQEQTMSMIEE 212
           MAA+RLSGMEISDLT+ELSDL Q I  GV  S +A++ AE  ++++ +M      SM E 
Sbjct: 146 MAAVRLSGMEISDLTMELSDLGQGITQGVKSSTRAIRVAEDRLRRLTNM--NPVASMQEV 203

Query: 213 RANLPIISLQPVVVGAARKTSRAV--GRATKSLMNIIS 248
                    +P++   AR     V  GR+   L + I+
Sbjct: 204 MRQTKTDETEPMLAKQARSFREGVVKGRSLWQLFSTIT 241


>AT5G09995.3 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G08530.1); Has 35333 Blast hits to 34131
           proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr5:3125185-3126302 REVERSE LENGTH=256
          Length = 256

 Score =  121 bits (303), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 5/158 (3%)

Query: 93  VSKFSFTDQAFFLITFIACTTSVTFTSLVFAAVPTLFAMRNAAISLSKLADTAREELPST 152
           +S+++FT + F L+  +AC T+++ + L FAA+PTL A + AA SL KL D  REELP T
Sbjct: 86  LSQWTFTQKHFVLLNVVACVTAISASWLFFAAIPTLLAFKKAAESLEKLLDVTREELPDT 145

Query: 153 MAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQALQAAEAGIKQIGSMAQEQTMSMIEE 212
           MAA+RLSGMEISDLT+ELSDL Q I  GV  S +A++ AE  ++++ +M      SM E 
Sbjct: 146 MAAVRLSGMEISDLTMELSDLGQGITQGVKSSTRAIRVAEDRLRRLTNM---NPASMQEV 202

Query: 213 RANLPIISLQPVVVGAARKTSRAV--GRATKSLMNIIS 248
                    +P++   AR     V  GR+   L + I+
Sbjct: 203 MRQTKTDETEPMLAKQARSFREGVVKGRSLWQLFSTIT 240


>AT5G09995.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G08530.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:3125327-3126302 REVERSE LENGTH=205
          Length = 205

 Score =  120 bits (302), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 57/109 (52%), Positives = 80/109 (73%)

Query: 93  VSKFSFTDQAFFLITFIACTTSVTFTSLVFAAVPTLFAMRNAAISLSKLADTAREELPST 152
           +S+++FT + F L+  +AC T+++ + L FAA+PTL A + AA SL KL D  REELP T
Sbjct: 86  LSQWTFTQKHFVLLNVVACVTAISASWLFFAAIPTLLAFKKAAESLEKLLDVTREELPDT 145

Query: 153 MAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQALQAAEAGIKQIGSM 201
           MAA+RLSGMEISDLT+ELSDL Q I  GV  S +A++ AE  ++++ +M
Sbjct: 146 MAAVRLSGMEISDLTMELSDLGQGITQGVKSSTRAIRVAEDRLRRLTNM 194