Miyakogusa Predicted Gene
- Lj3g3v3639450.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3639450.1 tr|A9TS65|A9TS65_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,71.43,1e-18,seg,NULL,CUFF.46066.1
(266 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G08530.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 245 3e-65
AT5G09995.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 121 5e-28
AT5G09995.3 | Symbols: | unknown protein; BEST Arabidopsis thal... 121 5e-28
AT5G09995.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 120 7e-28
>AT1G08530.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT5G09995.2); Has 140 Blast hits to 140
proteins in 53 species: Archae - 0; Bacteria - 63;
Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink). |
chr1:2701252-2702952 FORWARD LENGTH=257
Length = 257
Score = 245 bits (625), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 121/166 (72%), Positives = 141/166 (84%), Gaps = 2/166 (1%)
Query: 92 PVSKFSFTDQAFFLITFIACTTSVTFTSLVFAAVPTLFAMRNAAISLSKLADTAREELPS 151
P++K S +DQAF L+ FI CTTSV FTSLV A+PTL AM AA S +KLADTAR+ELPS
Sbjct: 94 PLAKLSLSDQAFLLLAFIVCTTSVAFTSLVITAIPTLVAMGRAATSFAKLADTARKELPS 153
Query: 152 TMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQALQAAEAGIKQIGSMAQEQTMSMIE 211
T+AA+RLSGMEISDLTLELSDLSQ+I DG+NKSA+A+QAAEAGIKQIG++AQ+QT+SMIE
Sbjct: 154 TLAAVRLSGMEISDLTLELSDLSQDITDGINKSAKAVQAAEAGIKQIGTLAQQQTLSMIE 213
Query: 212 ERANLPIISLQPVVVGAARKTSRAVGRATKSLMNIISGKEGTSEYD 257
ERANLP ISLQPVV GAA KTS A+G ATK LMNII+G G + D
Sbjct: 214 ERANLPEISLQPVVAGAAEKTSHAIGSATKRLMNIITG--GNKDED 257
>AT5G09995.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G08530.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr5:3125185-3126302 REVERSE LENGTH=257
Length = 257
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 4/158 (2%)
Query: 93 VSKFSFTDQAFFLITFIACTTSVTFTSLVFAAVPTLFAMRNAAISLSKLADTAREELPST 152
+S+++FT + F L+ +AC T+++ + L FAA+PTL A + AA SL KL D REELP T
Sbjct: 86 LSQWTFTQKHFVLLNVVACVTAISASWLFFAAIPTLLAFKKAAESLEKLLDVTREELPDT 145
Query: 153 MAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQALQAAEAGIKQIGSMAQEQTMSMIEE 212
MAA+RLSGMEISDLT+ELSDL Q I GV S +A++ AE ++++ +M SM E
Sbjct: 146 MAAVRLSGMEISDLTMELSDLGQGITQGVKSSTRAIRVAEDRLRRLTNM--NPVASMQEV 203
Query: 213 RANLPIISLQPVVVGAARKTSRAV--GRATKSLMNIIS 248
+P++ AR V GR+ L + I+
Sbjct: 204 MRQTKTDETEPMLAKQARSFREGVVKGRSLWQLFSTIT 241
>AT5G09995.3 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G08530.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr5:3125185-3126302 REVERSE LENGTH=256
Length = 256
Score = 121 bits (303), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 5/158 (3%)
Query: 93 VSKFSFTDQAFFLITFIACTTSVTFTSLVFAAVPTLFAMRNAAISLSKLADTAREELPST 152
+S+++FT + F L+ +AC T+++ + L FAA+PTL A + AA SL KL D REELP T
Sbjct: 86 LSQWTFTQKHFVLLNVVACVTAISASWLFFAAIPTLLAFKKAAESLEKLLDVTREELPDT 145
Query: 153 MAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQALQAAEAGIKQIGSMAQEQTMSMIEE 212
MAA+RLSGMEISDLT+ELSDL Q I GV S +A++ AE ++++ +M SM E
Sbjct: 146 MAAVRLSGMEISDLTMELSDLGQGITQGVKSSTRAIRVAEDRLRRLTNM---NPASMQEV 202
Query: 213 RANLPIISLQPVVVGAARKTSRAV--GRATKSLMNIIS 248
+P++ AR V GR+ L + I+
Sbjct: 203 MRQTKTDETEPMLAKQARSFREGVVKGRSLWQLFSTIT 240
>AT5G09995.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G08530.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:3125327-3126302 REVERSE LENGTH=205
Length = 205
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 80/109 (73%)
Query: 93 VSKFSFTDQAFFLITFIACTTSVTFTSLVFAAVPTLFAMRNAAISLSKLADTAREELPST 152
+S+++FT + F L+ +AC T+++ + L FAA+PTL A + AA SL KL D REELP T
Sbjct: 86 LSQWTFTQKHFVLLNVVACVTAISASWLFFAAIPTLLAFKKAAESLEKLLDVTREELPDT 145
Query: 153 MAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQALQAAEAGIKQIGSM 201
MAA+RLSGMEISDLT+ELSDL Q I GV S +A++ AE ++++ +M
Sbjct: 146 MAAVRLSGMEISDLTMELSDLGQGITQGVKSSTRAIRVAEDRLRRLTNM 194