Miyakogusa Predicted Gene

Lj3g3v3639420.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3639420.1 tr|B9N805|B9N805_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_584526 PE=4
SV=1,43.97,0.0000000000006,ZF_C3H1,Zinc finger, CCCH-type; no
description,NULL; seg,NULL; SUBFAMILY NOT NAMED,NULL;
MAKORIN-REL,CUFF.46062.1
         (338 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75340.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fami...   207   9e-54
AT1G75340.2 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fami...   201   5e-52

>AT1G75340.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type family
           protein | chr1:28269153-28271873 REVERSE LENGTH=435
          Length = 435

 Score =  207 bits (527), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 122/282 (43%), Positives = 165/282 (58%), Gaps = 45/282 (15%)

Query: 2   RDVCRNFQRGSCQYGERCKFLHAVQTQRKPNHSYQHQNTNNPFGFGXXXXXXXXXQQR-- 59
           +++CRNFQRGSC+YGE C+FLH  Q   KPN         NPFGFG         QQ+  
Sbjct: 3   KELCRNFQRGSCRYGENCRFLHPQQA--KPN---------NPFGFGTQNQQQQQQQQQQN 51

Query: 60  -TNPFGFGSQNSSYSNAPSHSDFKPNQFKPFENKWSRSSSQPQTG----ASRQSDNNSQS 114
            +NPFGFG Q+   S        +PNQF   +N WSR++S P  G    +++Q+   +Q 
Sbjct: 52  SSNPFGFGVQSGGSS--------RPNQF---QNTWSRTASTPTGGGAAASTQQTGKQTQP 100

Query: 115 VNHKCTDPEICKRQIAEDFENEKPLWILTCYTHSRGAPCDIVGDISYEELRAAAYEDAKK 174
            +HKCTDP  CKR + +DF+NE+P+W LTCY H +  PCD+ GDISYEELRA AYE+AK+
Sbjct: 101 ADHKCTDPAACKRVMQDDFKNERPMWKLTCYGHWKYFPCDVTGDISYEELRAVAYEEAKR 160

Query: 175 GMSLQSIVEKERNILKSKLIEFEKLRSEPYNIPLDLSLDIQNHQSNVAHANPFSPTTQNS 234
           G+ LQSIVE+ERN+  SK+ EFE     PY              S  A+ +PF+ TT + 
Sbjct: 161 GIPLQSIVERERNLQNSKIAEFENFLRNPY------------KGSVTANQSPFAATTPSI 208

Query: 235 GPLS--VSSFSQLGASLN--AGFERTSAPQMNTLAQPNSFGS 272
            P S  ++S S   +  N    F  T+A  +++   PN+F S
Sbjct: 209 FPQSSQINSPSPAFSGFNQQTAFSNTNAGGLSSSGPPNAFAS 250


>AT1G75340.2 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type family
           protein | chr1:28269153-28271873 REVERSE LENGTH=398
          Length = 398

 Score =  201 bits (512), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 185/349 (53%), Gaps = 70/349 (20%)

Query: 2   RDVCRNFQRGS--------------------CQYGERCKFLHAVQTQRKPNHSYQHQNTN 41
           +++CRNFQRGS                    C+YGE C+FLH  Q   KPN         
Sbjct: 3   KELCRNFQRGSLGFVFYILGFNLKSIDVRRCCRYGENCRFLHPQQA--KPN--------- 51

Query: 42  NPFGFGXXXXXXXXXQQR---TNPFGFGSQNSSYSNAPSHSDFKPNQFKPFENKWSRSSS 98
           NPFGFG         QQ+   +NPFGFG Q+   S        +PNQF   +N WSR++S
Sbjct: 52  NPFGFGTQNQQQQQQQQQQNSSNPFGFGVQSGGSS--------RPNQF---QNTWSRTAS 100

Query: 99  QPQTG----ASRQSDNNSQSVNHKCTDPEICKRQIAEDFENEKPLWILTCYTHSRGAPCD 154
            P  G    +++Q+   +Q  +HKCTDP  CKR + +DF+NE+P+W LTCY H +  PCD
Sbjct: 101 TPTGGGAAASTQQTGKQTQPADHKCTDPAACKRVMQDDFKNERPMWKLTCYGHWKYFPCD 160

Query: 155 IVGDISYEELRAAAYEDAKKGMSLQSIVEKERNILKSKLIEFEKLRSEPYNIPLDLSLDI 214
           + GDISYEELRA AYE+AK+G+ LQSIVE+ERN+  SK+ EFE     PY          
Sbjct: 161 VTGDISYEELRAVAYEEAKRGIPLQSIVERERNLQNSKIAEFENFLRNPY---------- 210

Query: 215 QNHQSNVAHANPFSPTTQNSGPLS--VSSFSQLGASLN--AGFERTSAPQMNTLAQPNSF 270
               S  A+ +PF+ TT +  P S  ++S S   +  N    F  T+A  +++   PN+F
Sbjct: 211 --KGSVTANQSPFAATTPSIFPQSSQINSPSPAFSGFNQQTAFSNTNAGGLSSSGPPNAF 268

Query: 271 GSGG---NFLTSNTPNLFGSSISGVQSSPFSA--PAQVTMFPGSMSQPQ 314
            S     N  + NTP    S  SG Q++P +   PA     PG  + PQ
Sbjct: 269 ASFNKQPNAFSVNTPQPVPSGPSGFQTNPSTTFKPASFGPGPGFATTPQ 317