Miyakogusa Predicted Gene

Lj3g3v3639350.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3639350.1 tr|B9MZM2|B9MZM2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_595516 PE=4
SV=1,32.62,7e-18,seg,NULL;
Frigida,Frigida-like,NODE_42918_length_2395_cov_23.117329.path1.1
         (453 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48385.1 | Symbols:  | FRIGIDA-like protein | chr5:19609471-1...    69   5e-12

>AT5G48385.1 | Symbols:  | FRIGIDA-like protein |
           chr5:19609471-19611712 FORWARD LENGTH=558
          Length = 558

 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 78/136 (57%), Gaps = 2/136 (1%)

Query: 54  FNEDEVLKLFELVAQHKLAVELFRTLGFSDKISDLVENLIMKKRYVGAVRFICAYKLTDK 113
           F EDE+LKL  +V++ + A EL R+LG ++K+  ++E L+   + + AV    A++LT++
Sbjct: 322 FKEDELLKLIPMVSRRRQAAELCRSLGLAEKMPGVIEVLVNSGKQIDAVNLAFAFELTEQ 381

Query: 114 IDPVGLLRLQIARANQLFRYGRKKPIAKKVRGKDLEIRILG--EVLQCISDNNLGSQDLV 171
             PV LL+  +  A +    GR    +  V+ +  E  ++G   V++CI +++L  Q  V
Sbjct: 382 FSPVSLLKSYLIEARRSSPQGRPGNASPAVQDEFNERELIGLKTVIKCIEEHSLEEQYPV 441

Query: 172 NEIQDRILAIKQEKEE 187
             +  RIL +++ K +
Sbjct: 442 EPLHKRILQLEKAKAD 457