Miyakogusa Predicted Gene

Lj3g3v3639330.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3639330.1 tr|Q2HTX0|Q2HTX0_MEDTR Frigida-like OS=Medicago
truncatula GN=MtrDRAFT_AC149601g7v2 PE=4 SV=1,32.82,6e-18,FAMILY NOT
NAMED,NULL; seg,NULL; coiled-coil,NULL;
Frigida,Frigida-like,CUFF.46102.1
         (1051 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48385.1 | Symbols:  | FRIGIDA-like protein | chr5:19609471-1...    75   3e-13
AT5G27220.1 | Symbols:  | Frigida-like protein | chr5:9578757-95...    63   1e-09

>AT5G48385.1 | Symbols:  | FRIGIDA-like protein |
           chr5:19609471-19611712 FORWARD LENGTH=558
          Length = 558

 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 133/305 (43%), Gaps = 38/305 (12%)

Query: 565 HQVKAEPQDF---SDDDSVSKYNQLTSPTTSDGR-NLQFLSNEPELIGNDILDCLQTSAD 620
           ++VKA PQ      D DS   +        SD R NL  L  E       I    + +A+
Sbjct: 167 YEVKAYPQLLKLCGDMDSTGLHK-----FVSDNRKNLASLKEE-------IPMAFRAAAN 214

Query: 621 PAALVLDIIQNPIVPQDRNGNEG-------------IIIDESHIMLLDQLMRISPSLRIN 667
           PA+LVLD ++    P +    +G             I++ E   +LL  L R   ++ ++
Sbjct: 215 PASLVLDSLEG-FYPMEAPTADGKKDANLLGMRRTCIMLMECLSILLSGLDRNCLAVVLS 273

Query: 668 PDIRDVAKKLATDLKA-----NMNPCDEXXXXXXXXXXXXXXXXXXXHFNEDEVFKLLEF 722
            +++  AK +A          +M+ C+                     F EDE+ KL+  
Sbjct: 274 QNVKHRAKTIAEGWNPLLESLDMDACNGNSLEAHAFLQLLATFAIVADFKEDELLKLIPM 333

Query: 723 AAQHKQAIELFRTLGFGDKITDFVQNLVEKKQYVDAARFICAYKLADKINPIDLLRFEIS 782
            ++ +QA EL R+LG  +K+   ++ LV   + +DA     A++L ++ +P+ LL+  + 
Sbjct: 334 VSRRRQAAELCRSLGLAEKMPGVIEVLVNSGKQIDAVNLAFAFELTEQFSPVSLLKSYLI 393

Query: 783 RAERXXXXXXXXXXEQKVR--CKELELGILRKVLQCISDNNLGSHQDLVNSVQDRILSLE 840
            A R             V+    E EL  L+ V++CI +++L   Q  V  +  RIL LE
Sbjct: 394 EARRSSPQGRPGNASPAVQDEFNERELIGLKTVIKCIEEHSL-EEQYPVEPLHKRILQLE 452

Query: 841 RRKEE 845
           + K +
Sbjct: 453 KAKAD 457


>AT5G27220.1 | Symbols:  | Frigida-like protein | chr5:9578757-9582752
            FORWARD LENGTH=1181
          Length = 1181

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 6/176 (3%)

Query: 609  NDILDCLQTSADPAALVLDIIQNPIVPQDRNGNEGII--IDESHIMLLDQLMRISPSLRI 666
            N++   LQ   DPA+ VL+++ + ++   + G  G+   + ++ I LL++L R+  S   
Sbjct: 861  NEVFTGLQGMIDPASYVLNVVNDELLGAQQRGELGLAEPVIKTLIPLLEELPRVVKS--- 917

Query: 667  NPDIRDVAKKLATDLKANMNPCDEXXXXXXXXXXXXXXXXXXXH-FNEDEVFKLLEFAAQ 725
            +  +   A ++AT     M    +                   H  ++D   +   + A 
Sbjct: 918  SKHLLSDALQVATRWSWMMGNSTQMSPLEAWGFLQLIVAYGLVHATSQDNTLRFASYVAH 977

Query: 726  HKQAIELFRTLGFGDKITDFVQNLVEKKQYVDAARFICAYKLADKINPIDLLRFEI 781
             KQA +LF +LG    + + V+ L++++ Y  A RFI  +KL    +P++LL+ EI
Sbjct: 978  FKQAPKLFESLGLSYAMPNLVKKLLDERHYFMAIRFIFYFKLKFNFSPLELLKDEI 1033