Miyakogusa Predicted Gene
- Lj3g3v3639160.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3639160.1 Non Chatacterized Hit- tr|A9NMG3|A9NMG3_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,39.1,5e-18,seg,NULL,CUFF.46052.1
(156 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G16660.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 133 6e-32
AT3G02900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 130 4e-31
AT5G16660.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 123 4e-29
AT3G02900.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 120 5e-28
AT1G42960.1 | Symbols: | expressed protein localized to the inn... 56 1e-08
>AT5G16660.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast
thylakoid membrane, chloroplast, membrane, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G02900.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
2996 (source: NCBI BLink). | chr5:5465699-5467006
REVERSE LENGTH=168
Length = 168
Score = 133 bits (334), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 106/165 (64%), Gaps = 17/165 (10%)
Query: 5 SIAPFSITGGS---HLKQPELCSAKRNLSLQRKSSLVI---TTRKRRSAISAEYRDNS-X 57
+ AP S++G S ++K L + + S+ + S L I + R R+ ++SA YRD S
Sbjct: 6 ATAPLSLSGVSQSHYVKANGLSTTTKLSSICKTSDLTIHKKSNRTRKFSVSAGYRDGSRS 65
Query: 58 XXXXXXXXXXXXXXXIFGTVAYIFSPQIRRSVLNE-NEYGFRKAKRPVYYDEGLERTRES 116
+FG VAYIF+PQIRRSVLNE +EYGF K K+P YYDEGLE+TRE+
Sbjct: 66 GSSGDFIAGFLLGGAVFGAVAYIFAPQIRRSVLNEEDEYGFEKPKQPTYYDEGLEKTRET 125
Query: 117 LNKKIGKLNSAIDDVSSRLRG------AKNVPASHVGSDPEVEST 155
LN+KIG+LNSAID+VSSRLRG + NVP V +DPEVE+T
Sbjct: 126 LNEKIGQLNSAIDNVSSRLRGREKNTSSLNVP---VETDPEVEAT 167
>AT3G02900.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G16660.1); Has 80 Blast
hits to 80 proteins in 21 species: Archae - 0; Bacteria
- 4; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). |
chr3:645850-647445 FORWARD LENGTH=162
Length = 162
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 104/167 (62%), Gaps = 18/167 (10%)
Query: 1 MAVASIAPFSITGGSHLKQPELCSAKRNLSLQRKSS-LVITTRKRRS---AISAEYRDNS 56
MA AP S +G SH+K A RN + RKSS L + T+ RS ++SA YR S
Sbjct: 1 MASLVAAPISFSGDSHVK------AHRNFNAIRKSSTLTVQTKSNRSHKLSVSAGYRGGS 54
Query: 57 XXXXXXXXXXX-XXXXXIFGTVAYIFSPQIRRSVLNENEYGFRKAKRPVYYDEGLERTRE 115
+FGT+AYIF+PQIRRSVL+ENEYGF+K ++P+YYDEGLE RE
Sbjct: 55 KGGGSSDFVTGFLLGSAVFGTLAYIFAPQIRRSVLSENEYGFKKPEQPMYYDEGLEERRE 114
Query: 116 SLNKKIGKLNSAIDDVSSRLRG-----AKNV--PASHVGSDPEVEST 155
LN+KIG+LNSAID VSSRL+G +KN P+ V +D E E+T
Sbjct: 115 ILNEKIGQLNSAIDKVSSRLKGGRSGSSKNTSSPSVPVETDAEAEAT 161
>AT5G16660.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast,
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G02900.1);
Has 106 Blast hits to 106 proteins in 32 species: Archae
- 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 78;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr5:5465699-5467006 REVERSE LENGTH=166
Length = 166
Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 103/164 (62%), Gaps = 17/164 (10%)
Query: 5 SIAPFSITGGS---HLKQPELCSAKRNLSLQRKSSLVI---TTRKRRSAISAEYRDNSXX 58
+ AP S++G S ++K L + + S+ + S L I + R R+ ++SA +
Sbjct: 6 ATAPLSLSGVSQSHYVKANGLSTTTKLSSICKTSDLTIHKKSNRTRKFSVSAG-DGSRSG 64
Query: 59 XXXXXXXXXXXXXXIFGTVAYIFSPQIRRSVLNE-NEYGFRKAKRPVYYDEGLERTRESL 117
+FG VAYIF+PQIRRSVLNE +EYGF K K+P YYDEGLE+TRE+L
Sbjct: 65 SSGDFIAGFLLGGAVFGAVAYIFAPQIRRSVLNEEDEYGFEKPKQPTYYDEGLEKTRETL 124
Query: 118 NKKIGKLNSAIDDVSSRLRG------AKNVPASHVGSDPEVEST 155
N+KIG+LNSAID+VSSRLRG + NVP V +DPEVE+T
Sbjct: 125 NEKIGQLNSAIDNVSSRLRGREKNTSSLNVP---VETDPEVEAT 165
>AT3G02900.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G16660.1). | chr3:645810-647445 FORWARD
LENGTH=161
Length = 161
Score = 120 bits (300), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 93/143 (65%), Gaps = 12/143 (8%)
Query: 25 AKRNLSLQRKSS-LVITTRKRRS---AISAEYRDNSXXXXXXXXXXXXXX-XXIFGTVAY 79
A RN + RKSS L + T+ RS ++SA YR S +FGT+AY
Sbjct: 18 AHRNFNAIRKSSTLTVQTKSNRSHKLSVSAGYRGGSKGGGSSDFVTGFLLGSAVFGTLAY 77
Query: 80 IFSPQIRRSVLNENEYGFRKAKRPVYYDEGLERTRESLNKKIGKLNSAIDDVSSRLRG-- 137
IF+PQIRRSVL+ENEYGF+K ++P+YYDEGLE RE LN+KIG+LNSAID VSSRL+G
Sbjct: 78 IFAPQIRRSVLSENEYGFKKPEQPMYYDEGLEERREILNEKIGQLNSAIDKVSSRLKGGR 137
Query: 138 ---AKNV--PASHVGSDPEVEST 155
+KN P+ V +D E E+T
Sbjct: 138 SGSSKNTSSPSVPVETDAEAEAT 160
>AT1G42960.1 | Symbols: | expressed protein localized to the inner
membrane of the chloroplast. | chr1:16125863-16127080
FORWARD LENGTH=168
Length = 168
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 73 IFGTVAYIFSPQIRRSVLNENEYGFRKAKRPVYYDE--GLERTRESLNKKIGKLNSAIDD 130
I G + +++PQI +++ + + YDE LE+TR+ L +KI +LNSAIDD
Sbjct: 84 IVGALGCVYAPQISKAIAGADRKDLMRKLPKFIYDEEKALEKTRKVLAEKIAQLNSAIDD 143
Query: 131 VSSRLRGAKNVPASHVGSDPEVEST 155
VSS+L+ +++ P S E+E+T
Sbjct: 144 VSSQLK-SEDTPNGAALSTDEIEAT 167