Miyakogusa Predicted Gene

Lj3g3v3627840.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3627840.1 Non Chatacterized Hit- tr|B6TI72|B6TI72_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,48.7,1e-18,PPP4R2,Protein phosphatase 4 core regulatory subunit
R2; seg,NULL; SUBFAMILY NOT NAMED,NULL; PPP4R2-,gene.g51122.t1.1
         (249 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G17070.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein ph...   187   6e-48

>AT5G17070.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein
           phosphatase 4 core regulatory subunit R2
           (InterPro:IPR015267); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:5613514-5616088 REVERSE LENGTH=277
          Length = 277

 Score =  187 bits (475), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 110/215 (51%), Positives = 133/215 (61%), Gaps = 27/215 (12%)

Query: 24  HKDVEQKFDVPREQVTQILQAIASTGKFWHEWDNLKSMLSFQLKQVLSEYPEAKVTTEEQ 83
           H   EQ  D+  E+V + L+A+ASTGKFW +W+ LK  LS+ LK+VLSEY EAK+T E+Q
Sbjct: 48  HPGAEQIADMSEEEVKRTLEAVASTGKFWQDWEILKGTLSYWLKKVLSEYSEAKMTDEQQ 107

Query: 84  YASLGESYFELVHKLDEELTCFIDGPPFTLQRLCEILLDAKSIYPNLSKLALALEKNLLV 143
             +LGE Y ELV +LDE L  F DGPPFTLQRLCEILL A+SIYP LSKLALALEKNLLV
Sbjct: 108 KEALGEPYSELVSRLDEALLRFDDGPPFTLQRLCEILLAARSIYPKLSKLALALEKNLLV 167

Query: 144 TSTLAISTDPCPQVTVQETNEQENASXXXXXXXXXXXXXXXXXXXXSDSAQNGIEPSVAT 203
           TS LAIST+P  Q     T E  N +                      ++    +P+V  
Sbjct: 168 TSMLAISTEPQSQ-----TTEDPNTATSETI-----------------TSAASCDPNVI- 204

Query: 204 DKDEVMAADKDEVMAEA-EADTRDDMTVDTEAFED 237
              E M  DKDE+M E  EAD  D MTVD E  ++
Sbjct: 205 ---ESMGGDKDEIMTEVEEADVDDAMTVDMETIDE 236