Miyakogusa Predicted Gene
- Lj3g3v3613660.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3613660.1 Non Chatacterized Hit- tr|I1K124|I1K124_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,61.7,0.0000003,no description,NULL; F-box,F-box domain,
cyclin-like; FBA_1,F-box associated domain, type 1; A
Recep,CUFF.46037.1
(406 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G06240.1 | Symbols: | F-box family protein | chr3:1887336-18... 105 5e-23
AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ... 92 7e-19
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ... 92 7e-19
AT3G23880.1 | Symbols: | F-box and associated interaction domai... 87 2e-17
AT4G22390.1 | Symbols: | F-box associated ubiquitination effect... 68 1e-11
AT1G50870.1 | Symbols: | F-box and associated interaction domai... 65 6e-11
AT3G10430.1 | Symbols: | F-box and associated interaction domai... 63 4e-10
AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-1... 62 1e-09
AT1G70970.1 | Symbols: | F-box and associated interaction domai... 59 5e-09
AT3G07870.1 | Symbols: | F-box and associated interaction domai... 56 4e-08
AT2G16220.1 | Symbols: | F-box and associated interaction domai... 55 6e-08
AT1G67130.1 | Symbols: | F-box family protein | chr1:25099262-2... 54 2e-07
AT5G07610.1 | Symbols: | F-box family protein | chr5:2406068-24... 53 3e-07
AT1G32420.1 | Symbols: | F-box and associated interaction domai... 53 4e-07
AT2G41473.1 | Symbols: | F-box family protein | chr2:17294453-1... 53 5e-07
AT1G52490.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box doma... 51 1e-06
AT1G31090.1 | Symbols: | F-box family protein | chr1:11094407-1... 51 1e-06
AT2G14710.1 | Symbols: | F-box family protein | chr2:6298936-63... 50 2e-06
AT2G17310.1 | Symbols: SON1 | F-box and associated interaction d... 50 3e-06
AT5G50220.1 | Symbols: | F-box family protein | chr5:20446068-2... 49 4e-06
AT3G17710.1 | Symbols: | F-box and associated interaction domai... 49 6e-06
AT4G19930.1 | Symbols: | F-box and associated interaction domai... 49 6e-06
AT3G49450.1 | Symbols: | F-box and associated interaction domai... 49 7e-06
AT4G38870.1 | Symbols: | F-box and associated interaction domai... 49 9e-06
>AT3G06240.1 | Symbols: | F-box family protein |
chr3:1887336-1888619 FORWARD LENGTH=427
Length = 427
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 112/413 (27%), Positives = 181/413 (43%), Gaps = 76/413 (18%)
Query: 14 VLPWELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTKLHLNRSLQNE--------- 64
VLP E++ EIL LP K++ RFRCVSK + +L S D F K+HL+ L+NE
Sbjct: 35 VLPPEIITEILLRLPAKSIGRFRCVSKLFCTL-SSDPGFAKIHLDLILRNESVRSLHRKL 93
Query: 65 ----HFLLKLELTNFIEDGVFPIPVSRLLNGPPSIDDDWFSRVRYNYSQIDDGCDRRFKS 120
H L L+ N I DG+ + N P D FS + NY
Sbjct: 94 IVSSHNLYSLDF-NSIGDGIRDLAAVE-HNYPLKDDPSIFSEMIRNYVG---------DH 142
Query: 121 MYSDYCSRLKSDYSILKSDY-SILGSYNGLVCLLGWYEFSYPTEQVWIRLWNPATRSMSR 179
+Y D LK + + ++ I+GS NGLVC+ P E + L+NP T R
Sbjct: 143 LYDDRRVMLKLNAKSYRRNWVEIVGSSNGLVCI-------SPGEGA-VFLYNPTTGDSKR 194
Query: 180 -----KSPICAVPYDSWKYYGFGYDHSRHAYKVVMVLWDCDEKKMETIVYCMGDACWRKV 234
+ D+++ YGFG+D YK+V ++ E ++ VY + WR++
Sbjct: 195 LPENFRPKSVEYERDNFQTYGFGFDGLTDDYKLVKLVA-TSEDILDASVYSLKADSWRRI 253
Query: 235 SSNHGFPLRLKAFEGQFVDGCMNWLALDKLNSHSHSWRDANVTLDHLVIVSFDMRQEAYR 294
+ L + +G + G N H W + V+V+FD++ E +R
Sbjct: 254 CN-----LNYEHNDGSYTSGV-------HFNGAIH-WVFTESRHNQRVVVAFDIQTEEFR 300
Query: 295 FLSLPEGVSHEVPHDHSN--LGVLRNCLCLFHDHNKTHFVVWQMREYGVHESWTQL-ATI 351
+ +P+ + + H SN +G L LC+ + H +W M EYG +SW+++ +
Sbjct: 301 EMPVPDE-AEDCSHRFSNFVVGSLNGRLCVVNSCYDVHDDIWVMSEYGEAKSWSRIRINL 359
Query: 352 SYTHLRCDGFPLYSPLMCFCEDRDIVLFLNKTWSGSNEYQALEVVMYNLRDNS 404
Y ++ PL D +++L L+ ++V+YN N+
Sbjct: 360 LYRSMK--------PLCSTKNDEEVLLELDG-----------DLVLYNFETNA 393
>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 100/395 (25%), Positives = 168/395 (42%), Gaps = 84/395 (21%)
Query: 12 VSVLPWELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTKLHLNRSLQ-NEHFLLKL 70
++ +P ++V +I LP KTL+R R +SK LI +D F + HL+R LQ +H ++ L
Sbjct: 1 MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLI-NDPDFIESHLHRVLQTGDHLMILL 59
Query: 71 ELTNFIEDGVFPIPVSRLLNGPPSIDDDWFSRVRYNYSQIDDGCDRRFKSMYSDYCSRLK 130
G RL S+D D V S ++ R +
Sbjct: 60 R-------GAL-----RLY----SVDLDSLDSV----SDVEHPMKRGGPT---------- 89
Query: 131 SDYSILKSDYSILGSYNGLVCLLGWYEFSYPTEQVWIRLWNPATRSMSRKSPICA-VPYD 189
+ GS NGL+ L + PT+ + ++NP+TR + R P +P
Sbjct: 90 ----------EVFGSSNGLIGL-----SNSPTD---LAVFNPSTRQIHRLPPSSIDLPDG 131
Query: 190 S----WKYYGFGYDHSRHAYKVV-MVLWDCDEK-------KMETIVYCMGDACWRKVSSN 237
S + +YG GYD YKVV MV + D + E V+ + W+++ S
Sbjct: 132 SSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESV 191
Query: 238 HG---------FPLRLKAFEGQFVDGCMNWLALDKLNSHSHSWRDANVTLDHLVIVSFDM 288
+ L + G ++W+ R + + +IV FD+
Sbjct: 192 ASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVL---------PRRPGLIAFN--LIVRFDL 240
Query: 289 RQEAYRFLSLPEGVSHEVPHDHSNLGVLRNCLCLFHDHNKTHFVVWQMREYGVHESWTQL 348
E + + PE V++ ++GVL CLCL ++++++ VW M+EY V +SWT++
Sbjct: 241 ALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKV 300
Query: 349 ATISYTHLRCDGFPLYSPLMCFCEDRDIVLFLNKT 383
T+ F PL+ + + ++L LN T
Sbjct: 301 FTVQKPK-SVKSFSYMRPLVYSKDKKKVLLELNNT 334
>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 100/395 (25%), Positives = 168/395 (42%), Gaps = 84/395 (21%)
Query: 12 VSVLPWELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTKLHLNRSLQ-NEHFLLKL 70
++ +P ++V +I LP KTL+R R +SK LI +D F + HL+R LQ +H ++ L
Sbjct: 1 MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLI-NDPDFIESHLHRVLQTGDHLMILL 59
Query: 71 ELTNFIEDGVFPIPVSRLLNGPPSIDDDWFSRVRYNYSQIDDGCDRRFKSMYSDYCSRLK 130
G RL S+D D V S ++ R +
Sbjct: 60 R-------GAL-----RLY----SVDLDSLDSV----SDVEHPMKRGGPT---------- 89
Query: 131 SDYSILKSDYSILGSYNGLVCLLGWYEFSYPTEQVWIRLWNPATRSMSRKSPICA-VPYD 189
+ GS NGL+ L + PT+ + ++NP+TR + R P +P
Sbjct: 90 ----------EVFGSSNGLIGL-----SNSPTD---LAVFNPSTRQIHRLPPSSIDLPDG 131
Query: 190 S----WKYYGFGYDHSRHAYKVV-MVLWDCDEK-------KMETIVYCMGDACWRKVSSN 237
S + +YG GYD YKVV MV + D + E V+ + W+++ S
Sbjct: 132 SSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESV 191
Query: 238 HG---------FPLRLKAFEGQFVDGCMNWLALDKLNSHSHSWRDANVTLDHLVIVSFDM 288
+ L + G ++W+ R + + +IV FD+
Sbjct: 192 ASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVL---------PRRPGLIAFN--LIVRFDL 240
Query: 289 RQEAYRFLSLPEGVSHEVPHDHSNLGVLRNCLCLFHDHNKTHFVVWQMREYGVHESWTQL 348
E + + PE V++ ++GVL CLCL ++++++ VW M+EY V +SWT++
Sbjct: 241 ALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKV 300
Query: 349 ATISYTHLRCDGFPLYSPLMCFCEDRDIVLFLNKT 383
T+ F PL+ + + ++L LN T
Sbjct: 301 FTVQKPK-SVKSFSYMRPLVYSKDKKKVLLELNNT 334
>AT3G23880.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:8622061-8623155
REVERSE LENGTH=364
Length = 364
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 147/344 (42%), Gaps = 63/344 (18%)
Query: 15 LPWELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTKLHLNRSLQNEHFLLKLELTN 74
LP E++ EIL LPVK+L RF+CV SW+SLIS+ +L L LE +
Sbjct: 14 LPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISE-----------TLFALKHALILETSK 62
Query: 75 FIEDGVFPIPVSRLLNGPPSIDDDWFSRVRYNYSQIDDGCDRRFKSMYSDYCSRLKSDYS 134
P V + RY+ + C + + Y S + D
Sbjct: 63 ATTSTKSPYGV--------------ITTSRYH---LKSCCIHSLYNASTVYVS--EHDGE 103
Query: 135 ILKSDY-SILGSYNGLVCLLGWYEFSYPTEQVWIRLWNPATRSMSR--KSPICAVPYDSW 191
+L DY ++G+ +GLVC Y+ S + LWNP + R S + +
Sbjct: 104 LLGRDYYQVVGTCHGLVCFHVDYDKS-------LYLWNPTIKLQQRLSSSDLETSDDECV 156
Query: 192 KYYGFGYDHSRHAYKVVMVLWDCDEKKMETIVYCMGDACWRKVSSNHGFPLRL----KAF 247
YGFGYD S YKVV +L + K+ET +Y WR SN FP + K+
Sbjct: 157 VTYGFGYDESEDDYKVVALLQQRHQVKIETKIYSTRQKLWR---SNTSFPSGVVVADKSR 213
Query: 248 EGQFVDGCMNWLALDKLNSHSHSWRDANVTLDHLVIVSFDMRQEAYRFLSLPEGVSHEVP 307
G +++G +NW A +S + S+DM ++ ++ LP V
Sbjct: 214 SGIYINGTLNWAATSSSSSWTII--------------SYDMSRDEFK--ELPGPVCCGRG 257
Query: 308 HDHSNLGVLRNCLCLFHDHNKTHFVVWQMREYGVHESWTQLATI 351
LG LR CL + + VW M+E+G SW++L +I
Sbjct: 258 CFTMTLGDLRGCLSMVCYCKGANADVWVMKEFGEVYSWSKLLSI 301
>AT4G22390.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr4:11813757-11815074 REVERSE
LENGTH=402
Length = 402
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/388 (22%), Positives = 155/388 (39%), Gaps = 82/388 (21%)
Query: 16 PWELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTKLHLNRSLQ-NEHFLLKLELTN 74
P +L+ E+ L TL++ R +SK SLI D F HL R L+ EH ++
Sbjct: 5 PTDLINEMFLRLRATTLVKCRVLSKPCFSLI-DSPEFVSSHLRRRLETGEHLMI------ 57
Query: 75 FIEDGVFPIPVSRLLNGPPSIDDDWFSRVRYNYSQIDDGCDRRFKSMYSDYCSRLKSDYS 134
LL GP R +++ D +
Sbjct: 58 -------------LLRGP-----------------------RLLRTVELDSPENVSDIPH 81
Query: 135 ILKSD--YSILGSYNGLVCLLGWYEFSYPTEQVWIRLWNPATRSMSRKSPICAVPYDS-- 190
L++ + GS+NG++ L V + ++NP+TR + R PI + +
Sbjct: 82 PLQAGGFTEVFGSFNGVIGLC--------NSPVDLAIFNPSTRKIHR-LPIEPIDFPERD 132
Query: 191 ----WKYYGFGYDHSRHAYKVVMVLWDCDEKK--------METIVYCMGDACWRKVSSNH 238
+ +YG GYD +KVV ++ C K+ +E V+ + W++V
Sbjct: 133 ITREYVFYGLGYDSVGDDFKVVRIV-QCKLKEGKKKFPCPVEVKVFSLKKNSWKRVCLMF 191
Query: 239 GFPLRLKAFEGQFVDGCMNWLALDKLNSHSH---SWRDANVTLDHLVIVSFDMRQEAYRF 295
F + ++ + + + N+H H R + + I+ +D+ +
Sbjct: 192 EFQILWISYYYHLLPRRGYGVVV---NNHLHWILPRRQGVIAFN--AIIKYDLASDDIGV 246
Query: 296 LSLPEGVSHEVPHDHSNLGVLRNCLCLFHDHNKTHFVVWQMREYGVHESWTQLATISYTH 355
LS P+ + E D+ ++GVL C+CL +H VW ++EY ++SWT+L +
Sbjct: 247 LSFPQELYIE---DNMDIGVLDGCVCLMCYDEYSHVDVWVLKEYEDYKSWTKLYRVPKPE 303
Query: 356 LRCDGFPLYSPLMCFCEDRDIVLFLNKT 383
+ PL+C + I+L +N
Sbjct: 304 -SVESVEFIRPLICSKDRSKILLEINNA 330
>AT1G50870.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr1:18855147-18856337
FORWARD LENGTH=396
Length = 396
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 123/302 (40%), Gaps = 65/302 (21%)
Query: 4 KTLTLTRGVSVLPWELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTKLHLNRSLQN 63
KT TL + P +L++EIL LPVK++LRFRCVSK W S + D FT + RS
Sbjct: 25 KTTTL-----LCPLDLILEILLRLPVKSVLRFRCVSKLWLS-TTTDPYFTNSYEARSSTR 78
Query: 64 EHFLLKLELTNFIEDGVFPIPVSRLLNGPPSIDDDWFSRVRYNYSQIDDGCDRRFKSMYS 123
L+ + + + FP + S+ ++YSQ D + Y
Sbjct: 79 PSLLMFFKNKDKLFVFTFP-------------HHNQNSKETHSYSQHVDS----YHIKYP 121
Query: 124 DYCSRLKSDYSILKSDYSILGSYNGLVCLLGWYEFSYPTEQVWIRLWNPATRSMSRKSPI 183
YC + S +GL+ F T+ + +WNP R I
Sbjct: 122 KYCC------------FPFTESVHGLI------SFRISTKPI---IWNPTMRQFL----I 156
Query: 184 CAVPYDSWKYYG--FGYDHSRHAYKVVMVLWDCDEKKMETIVYCMGDACWRKVSSN--HG 239
P SWK GYD +K++ + D + + WR++ SN H
Sbjct: 157 LPKPEKSWKGLSVFLGYDPVEGKHKLMCMNRDNTSDECRVLTLGSAQEKWRRIKSNLKHR 216
Query: 240 FPLRLKAFEGQFVDGCMNWLALDKLNSHSHSWRDANVTLDHLVIVSFDMRQEAYRFLSLP 299
LR + GQ ++G + + A + D + + I+SF++R E + ++LP
Sbjct: 217 SILR---YYGQCINGVIYYQA----------YIDQMGFISNPTIMSFEVRSEKFDTITLP 263
Query: 300 EG 301
G
Sbjct: 264 SG 265
>AT3G10430.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:3242750-3243862
REVERSE LENGTH=370
Length = 370
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 113/288 (39%), Gaps = 71/288 (24%)
Query: 13 SVLPWELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTKLHLNRSLQNEHFLLKLEL 72
S LP++L++EIL P ++LLRF+ K W LIS+DK F HL++S + + E
Sbjct: 3 SSLPFDLILEILQRTPAESLLRFKSTCKKWYELISNDKRFMYKHLDKSTKRFLRIENRER 62
Query: 73 TNFIEDGVFPIPVSRLLNGPPSIDDDWFSRVRYNYSQIDDGCDRRFKSMYSDYCSRLKSD 132
++ + VS + N +R+ Y + + D
Sbjct: 63 VQILDPVTEILAVSTIPN-----------ELRHKYFTL------------------IHCD 93
Query: 133 YSILKSDYSILGSYNGLVCLLGWYEFSYPTEQVWIRLWNPATRSMS--RKSPICAVPYDS 190
+L Y LGS L +WNP R + + SP + S
Sbjct: 94 GLMLGMCYEELGSDPNLA------------------VWNPVMRKIKWIKPSPPLVCYWGS 135
Query: 191 WKYYGFGYDHS-RHAYKVVMVLW----DCDEKKMETIVYCMGDACWRKVSSNHGFPLRLK 245
Y GFGYD + R YK++ + D DE + +Y WR + + + ++
Sbjct: 136 -DYLGFGYDKTFRDNYKILRFTYLGDDDDDESYPKCQIYEFNSGSWRSIEAKFDGEIDVE 194
Query: 246 AFEGQFVDGCMNWLALDKLNSHSHSWRDANVTLDHLVIVSFDMRQEAY 293
+G V+G M W+ L + + I+SFD +E +
Sbjct: 195 V-DGVSVNGSMYWIELQEKKN---------------FILSFDFSKETF 226
>AT1G30920.1 | Symbols: | F-box family protein |
chr1:11004242-11005444 REVERSE LENGTH=400
Length = 400
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 122/291 (41%), Gaps = 57/291 (19%)
Query: 15 LPWELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTKLHLNRSLQNEHFLLKLELTN 74
+P +L+++ILS LP K++ R RCVSK W+S+I FT+L L RS H L+ +E
Sbjct: 10 IPIDLILDILSRLPSKSIARCRCVSKLWESMIRQS-YFTELFLTRSSSRPHLLIAVEQEG 68
Query: 75 FIEDGVFPIPVSRLLNGPPSIDDDWFSRVR-YNYSQIDDGCDRRFKSMY-SDYCSRLKSD 132
E F +P + G S+ ++ + + GC +Y + R K D
Sbjct: 69 --EWKFFSLPQPKNYLGKSSLVVAANLHLKFFEDKRPQHGCSYASSLIYFPNMTIRKKGD 126
Query: 133 YSILKSDYSILGSYNGLVCLLGWYEFSYPTEQVWIRLWNPATRSMSRKSPICAVPYDSWK 192
+ G++C NP+T + + S
Sbjct: 127 ------------DHLGVIC-------------------NPSTGQYGYVILPPLLDFKSVP 155
Query: 193 YYGF-GYDHSRHAYKVVMVLWDCDEKKMETIVYCMG--DACWRKVSSNHGFPLR-LKAFE 248
Y F G+D +KV++ ++D D+ + + + +G WRK+ S PLR L
Sbjct: 156 YGKFLGFDPIDKQFKVLIPIFDFDKHQTDHHILTLGAETVGWRKIQS----PLRYLPHSN 211
Query: 249 GQF-VDGCMNWLALDKLNSHSHSWRDANVTLDHLVIVSFDMRQEAYRFLSL 298
G ++G + +LA N +D V+V FD+R E + FL L
Sbjct: 212 GTICINGILYYLA------------KINYAMDKNVLVCFDVRSENFVFLRL 250
>AT1G70970.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr1:26759834-26761042
FORWARD LENGTH=402
Length = 402
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 83/198 (41%), Gaps = 33/198 (16%)
Query: 18 ELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTKLHLNRSLQNEHFLLKLELTNFIE 77
+L EI+SWLP+K+LLRF VSK W S+I ++ F L+L RS+ +
Sbjct: 13 DLQTEIMSWLPLKSLLRFVIVSKKWASIIRGEQ-FKALYLRRSMTRPRLMFM-------- 63
Query: 78 DGVFPIPVSRLLNGPPSIDDDWFSRVRYNYSQIDDGCDRR--FKSMYSDYCSRLKSDYSI 135
V R+ PP + WF I + F S+Y + S
Sbjct: 64 -------VRRIATLPPEPEMVWFQSFCKEERCIPGQLEVEFLFHSVYQEKIPYFSSGQQQ 116
Query: 136 LK----SDY-SILGSYNGLVCLLGWYEFSYPTEQVWIRLWNPATRSMSRKSPICAVPYDS 190
L+ ++Y S+ GL+CL +F+ L NP T+ SR P +
Sbjct: 117 LRVPPNTNYTSVSQPIGGLICLQSETKFA---------LCNPGTKK-SRALPDIQAHEKA 166
Query: 191 WKYYGFGYDHSRHAYKVV 208
+ GYD + + +KV+
Sbjct: 167 FITSFLGYDEATNVFKVL 184
>AT3G07870.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:2510871-2512124
FORWARD LENGTH=417
Length = 417
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 78/353 (22%), Positives = 139/353 (39%), Gaps = 66/353 (18%)
Query: 15 LPWELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTKLHLNRSLQNEHFLLKLELTN 74
LP +++ +I S LP+ ++ R V +SW+S+++ +L + S + LL L +
Sbjct: 28 LPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQH---GRLSSSSSSPTKPCLL-LHCDS 83
Query: 75 FIEDGVFPIPVSRLLNGPPSIDDDWFSRVRYNYSQIDDGCDRRFKSMYSDYCSRLKSDYS 134
I +G+ + +S ++R K+ + R S
Sbjct: 84 PIRNGLHFLDLSEE--------------------------EKRIKT--KKFTLRFASSMP 115
Query: 135 ILKSDYSILGSYNGLVCLLGWYEFSYPTEQVWIRLWNPATRSMSRKSPICAVPY-DSWKY 193
++ ++GS NGL+CL S + L+NP T + S + P C+ Y D
Sbjct: 116 ----EFDVVGSCNGLLCL------SDSLYNDSLYLYNPFT-TNSLELPECSNKYHDQELV 164
Query: 194 YGFGYDHSRHAYKVVMVLWDCDEKKMETIVYCMGDACWRKVSSNHGFPLRLKAFEGQFVD 253
+GFG+ YKV+ +++ +Y K S +++ + D
Sbjct: 165 FGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRGRIQYKQSE-----VQILTLSSKTTD 219
Query: 254 GCMNWLALDK-------------LNSHSHSWRDANVTLDHLVIVSFDMRQEAYRFLSLPE 300
++W +L K +N H + VSFD+ E ++ + P+
Sbjct: 220 QSLSWRSLGKAPYKFVKRSSEALVNGRLHFVTRPRRHVPDRKFVSFDLEDEEFKEIPKPD 279
Query: 301 -GVSHEVPHDHSNLGVLRNCLCLFHDHNKTHFVVWQMREYGVHESWTQLATIS 352
G + H NL + CLC N +W M+ YGV ESW + +I
Sbjct: 280 CGGLNRTNHRLVNL---KGCLCAVVYGNYGKLDIWVMKTYGVKESWGKEYSIG 329
>AT2G16220.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr2:7030155-7031378
REVERSE LENGTH=407
Length = 407
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 115/284 (40%), Gaps = 43/284 (15%)
Query: 18 ELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTKLHLNRSLQNEHFLLKLELTNFIE 77
+L++E+LS LP+K++ RF CVSK W S+ F +L L RS L + ++
Sbjct: 9 DLILEVLSRLPLKSVARFHCVSKRWASMFG-SPYFKELFLTRSSAKPRLLFAI-----VQ 62
Query: 78 DGVFPIPVSRLLNGPPSIDDDWFSRVRYNYSQIDDGCDRRFKSMYSDYCSRLKSDYSILK 137
+GV+ +FS R S F S R+ D +
Sbjct: 63 NGVW----------------RFFSSPRLEKSSSTLVATAEFHMKLSPNNLRIYHDNT--- 103
Query: 138 SDYSILGSYNGLVCLLGWYEFSYPTEQVWIRLWNPATRSMSRKSPICAVPYDSWKYYGFG 197
Y +G +GL+ L G + P + NP T + P C ++ + FG
Sbjct: 104 PRYFSIGYASGLIYLYGDRYEATPL------ICNPNTGRYT-ILPKCYTYRKAFSF--FG 154
Query: 198 YDHSRHAYKVVMVLWDCDEKKMETIVYCMGDACWRKVSSNHGFPLRLKAFEGQFVDGCMN 257
+D YK + +++ + + + GD W+K+ L +G ++G +
Sbjct: 155 FDPIDKQYKALSMIYPSGPGHSKILTFGDGDMNWKKIKYR---VLHDIYSQGICINGVLY 211
Query: 258 WLALDKLNSHSHSWRDANVTLDHLVIVSFDMRQEAYRFLSLPEG 301
+L + W + + V+V FD+R E++ F+ L G
Sbjct: 212 YLG------DTSDWDNDHDVTSGNVLVCFDLRSESFTFIGLECG 249
>AT1G67130.1 | Symbols: | F-box family protein |
chr1:25099262-25100625 REVERSE LENGTH=391
Length = 391
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 8 LTRGVSV--LPWELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTKLHLNRSLQNEH 65
+ RG ++ +P +L+++ILS LP K++ RF CVSK W S+++ + FT+L +NRS N
Sbjct: 1 MNRGETLDSIPTDLILDILSRLPTKSIARFHCVSKLWSSMLA-SQDFTRLFVNRSSSNPR 59
Query: 66 FLLKL 70
LL +
Sbjct: 60 LLLGI 64
>AT5G07610.1 | Symbols: | F-box family protein |
chr5:2406068-2407330 FORWARD LENGTH=420
Length = 420
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 126/322 (39%), Gaps = 76/322 (23%)
Query: 18 ELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTKLHLNRSLQNEHFLLKLELTNFIE 77
+++I+ILS+LP+KTLLRF+ VSK W SLI++ + NR +++ H
Sbjct: 36 DVLIQILSFLPIKTLLRFKRVSKRWLSLITN-----PVFSNRVIKSNH------------ 78
Query: 78 DGVFPIPVSRLLNGPPSIDDDWFSRVRYNYSQIDDGCDRRFKSMYSDYCSRLKSDYSILK 137
P+P+S P ++Y++ +DD + S S L ++ +
Sbjct: 79 ----PLPISGFFLHSP-------REIKYSFVSLDDDATNQRIS------SSLPLWFTDHQ 121
Query: 138 SDYSILGSYNG-LVCLLGWYEFSYPTEQVWIRLWNPATRSMSRKSPICAVPYDSWKYYGF 196
+D I+ S NG L+C ++ ++ +NP T+ + I
Sbjct: 122 TDMIIMQSTNGLLLCKCSCASSNHFNTNYYV--YNPTTKQYTLLHQIAG-----HIALSL 174
Query: 197 GYDHSRHAYKVVMVLWD---------CDEKKMETIVYCMGDACWRKVSSNHGFPLRLKAF 247
+D SR + V L D + VY + WR+V P F
Sbjct: 175 AFDPSRSPHYKVFCLRGRSNNSFSSASDSELYHIEVYSSNEGLWRRVVPVPTSPSTFIEF 234
Query: 248 E-GQFVDGCMNWLALDKLNSHSHSWRDANVTLDHLVIVSFDMRQEAYRFLSLPEGVSHEV 306
F +G +NW S RD +SFD+ + + L LP+
Sbjct: 235 SYSVFWNGAVNWYGF--------SSRDC---------LSFDINTQEIKILPLPD------ 271
Query: 307 PHDHSNLGVLRNCLCLFHDHNK 328
H+H + + + +F D ++
Sbjct: 272 -HEHEDEPLPDPRILMFLDESQ 292
>AT1G32420.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr1:11701995-11702903
FORWARD LENGTH=302
Length = 302
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 113/291 (38%), Gaps = 69/291 (23%)
Query: 15 LPWELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTKLHLNRSLQNEHFLLKLELTN 74
+P +L +EIL LP K+LLRF+CVSK W S+IS + F
Sbjct: 37 IPLDLTVEILKKLPAKSLLRFQCVSKQWLSIISSRRDFI--------------------- 75
Query: 75 FIEDGVFPIPVSRLLNGPPSIDDDWFSRVRYNYSQIDDGCD-RRFKSMYSDYCSRLKSDY 133
D + V+R L PP D ++ +++ + G F S Y +D
Sbjct: 76 ---DSI----VTRSLTQPPPRD----IKLIFHHQVLYPGPHFFIFSSTYPQ-----NTDK 119
Query: 134 SILKSDYSILGSYNGLVCLLGWYEFSYPTEQVWIRLWNPATRSMSRKSPICAVP----YD 189
L + S GL+C W PT + ++NP TR VP Y
Sbjct: 120 ESLTTRASSYHYVRGLICC--WSHC--PTT---VDIYNPTTRQYY------TVPDTNRYQ 166
Query: 190 SWKYYGFGYDHSRHAYKVVMVLWDCDEKKMETIVYCMGDACWRKVSSNHGFPLRLKAFEG 249
+ FGYD + YK VMVL ++ V+ +GD + G + +
Sbjct: 167 YIETCFFGYDPVENQYK-VMVLPKYYMEESPCQVFTVGDPIEKPWRDIQGIGVHFLLKDA 225
Query: 250 QFVDGCMNWLALDKLNSHSHSWRDANVTLDHLVIVSFDMRQEAYRFLSLPE 300
++G + + A ++ S +VSFD+R E + + P+
Sbjct: 226 VCINGVIYYQATNEYGS-------------TYFLVSFDVRSEKFNHVKAPK 263
>AT2G41473.1 | Symbols: | F-box family protein |
chr2:17294453-17294728 REVERSE LENGTH=91
Length = 91
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Query: 12 VSVLPWELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTKLH 56
++ L ++LVIEIL+ +PVK LLRFRCV KSW+SL D++ F ++H
Sbjct: 1 MAELAFDLVIEILAKVPVKYLLRFRCVCKSWRSLFQDER-FIRMH 44
>AT1G52490.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box domain,
cyclin-like (InterPro:IPR001810), F-box domain,
Skp2-like (InterPro:IPR022364), F-box associated domain,
type 3 (InterPro:IPR013187), F-box associated
interaction domain (InterPro:IPR017451); BEST
Arabidopsis thaliana protein match is: F-box and
associated interaction domains-containing protein
(TAIR:AT1G32420.1); Has 1577 Blast hits to 1056 proteins
in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 1577; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:19556218-19559011
REVERSE LENGTH=513
Length = 513
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 167 IRLWNPATRS---MSRKSPICAVPYDSWKYYGFGYDHSRHAYKVVMVLWDCDEKKMETIV 223
+ ++NP TR + + + P K+ FGYDH + YKV+ ++ D E V
Sbjct: 71 VTIYNPTTRQCLPLPKIESMVLSP-KRHKHCYFGYDHVMNEYKVLAMVNDSQELTQTFHV 129
Query: 224 YCMGDAC--WRKVSSNHGFPLRLKAFEGQFVDGCMNWLALDKLNSHSHSWRDANVTLDHL 281
+ +G C WRK+ N + L + G +DG + ++A+ R N L
Sbjct: 130 FTLGRDCPQWRKIRGNIDYELISVSRAGVCIDGTIYYVAVR---------RKDNENYGEL 180
Query: 282 VIVSFDMRQEAYRFLSLPE 300
++SFD++ E + + PE
Sbjct: 181 FMMSFDVKSERFYHVRTPE 199
>AT1G31090.1 | Symbols: | F-box family protein |
chr1:11094407-11095649 FORWARD LENGTH=311
Length = 311
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 8 LTRGVSV--LPWELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTKLHLNRSLQNEH 65
+ RG + +P +L+ EILS L VK + RFRCVSK W+S+I + FT+L NRS N
Sbjct: 1 MNRGANSDSIPTDLIYEILSRLSVKPITRFRCVSKLWESIIC-RQDFTELFHNRSSSNPR 59
Query: 66 FLL 68
L+
Sbjct: 60 LLI 62
>AT2G14710.1 | Symbols: | F-box family protein |
chr2:6298936-6300024 FORWARD LENGTH=362
Length = 362
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Query: 15 LPWELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTKLH 56
LPWEL+ EILS +P K+L+RFR VSK W +L DDK+F H
Sbjct: 7 LPWELIEEILSRVPPKSLVRFRTVSKQWNALF-DDKTFINNH 47
>AT2G17310.1 | Symbols: SON1 | F-box and associated interaction
domains-containing protein | chr2:7531212-7532324
FORWARD LENGTH=370
Length = 370
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 14 VLPWELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTKLHLNRS 60
LPWEL +ILS LP +L+RFR VSK W SL +DK+F HL+RS
Sbjct: 2 ALPWELEEDILSRLPPISLVRFRTVSKHWNSLF-NDKTFINNHLSRS 47
>AT5G50220.1 | Symbols: | F-box family protein |
chr5:20446068-20447200 REVERSE LENGTH=357
Length = 357
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 15 LPWELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTKLHLNRSL 61
+P +L++EIL LP K+L++F+CVSK W S+I + F + RSL
Sbjct: 33 IPIDLMVEILKKLPAKSLIKFQCVSKQWSSIIGSSRDFIDSIVTRSL 79
>AT3G17710.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:6055597-6056703
FORWARD LENGTH=368
Length = 368
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 15 LPWELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTKLHLNRSLQNEHFL 67
LPW+L EILS LP ++L+RFR V K W L S DK F K HL R+ FL
Sbjct: 6 LPWDLEEEILSRLPPRSLVRFRTVCKHWNGLFS-DKRFVKKHLVRARPQFIFL 57
>AT4G19930.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr4:10803558-10804853
FORWARD LENGTH=431
Length = 431
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 15 LPWELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTKLHLNRSLQNEHFLLKLELT 73
+P++LVIEIL+ LP K+L+RF+ VSK W SLI ++FT NR L+ F+ +L +T
Sbjct: 43 IPFDLVIEILTRLPAKSLMRFKSVSKLWSSLIC-SRTFT----NRLLRVPSFIQRLYVT 96
>AT3G49450.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:18337305-18338498
REVERSE LENGTH=397
Length = 397
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 2 EEKTLTLTRGVS-------VLPWELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTK 54
E LT++ V LP +L++EILS +P K+ RFRCVS W SL+ T
Sbjct: 12 ENVALTISSSVGEYGENSGTLPTDLMVEILSRVPAKSAARFRCVSNDWNSLLRSP-YLTN 70
Query: 55 LHLNRSLQNEHFLLKLE 71
L L RS H L+ +
Sbjct: 71 LFLKRSSARPHLLITFQ 87
>AT4G38870.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr4:18132583-18133863
REVERSE LENGTH=426
Length = 426
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 14 VLPWELVIEILSWLPVKTLLRFRCVSKSWKSLISDDKSFTKLHLNRSLQNEHFLL 68
+LP +L++EIL L +K L+RF CVSK W S+I D F KL LN SL+ L+
Sbjct: 52 LLPVDLIMEILKKLSLKPLIRFLCVSKLWASIIRDP-YFMKLFLNESLKRPKSLV 105