Miyakogusa Predicted Gene

Lj3g3v3613600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3613600.1 tr|G7ICP1|G7ICP1_MEDTR F-box/kelch-repeat protein
OS=Medicago truncatula GN=MTR_1g071010 PE=4
SV=1,30.08,5e-19,FBA_1,F-box associated domain, type 1; F_box_assoc_1:
F-box protein interaction domain,F-box associa,CUFF.46027.1
         (234 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06240.1 | Symbols:  | F-box family protein | chr3:1887336-18...    75   4e-14
AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ...    74   1e-13
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ...    74   1e-13
AT3G23880.1 | Symbols:  | F-box and associated interaction domai...    58   4e-09
AT4G22390.1 | Symbols:  | F-box associated ubiquitination effect...    58   6e-09

>AT3G06240.1 | Symbols:  | F-box family protein |
           chr3:1887336-1888619 FORWARD LENGTH=427
          Length = 427

 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 36/236 (15%)

Query: 4   GFGFDDLHATYKVVAVIRDCKTQTMETKVHCMGDSCWRTILNEPGFPLVLKQVNGQVVSG 63
           GFGFD L   YK+V ++   +   ++  V+ +    WR I N     L  +  +G   SG
Sbjct: 215 GFGFDGLTDDYKLVKLVATSE-DILDASVYSLKADSWRRICN-----LNYEHNDGSYTSG 268

Query: 64  CVNWLGLDKLNCRNGEWGAADVTLQQLVVVSFDLREEEFRLLSLP-EGVSCEVPHDESNL 122
            V++ G          W   +    Q VVV+FD++ EEFR + +P E   C        +
Sbjct: 269 -VHFNGA-------IHWVFTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVV 320

Query: 123 GVLRNCLCLFHDHKRTHFVVWQMREYGVRESWTRL-VSVSYEHLRCDGFPSLRPLMSLSE 181
           G L   LC+ +     H  +W M EYG  +SW+R+ +++ Y         S++PL S   
Sbjct: 321 GSLNGRLCVVNSCYDVHDDIWVMSEYGEAKSWSRIRINLLYR--------SMKPLCSTKN 372

Query: 182 DGGDILLLVTYQDMEAVTIMYNLKDNSVKCIQLPNNKPFLND----NGYVESLISP 233
           D  ++LL     +++   ++YN + N+   + +   K  L+D    N YVESLISP
Sbjct: 373 D-EEVLL-----ELDGDLVLYNFETNASSNLGICGVK--LSDGFEANTYVESLISP 420


>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
           domains-containing protein | chr4:7441815-7443157
           FORWARD LENGTH=413
          Length = 413

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 30/205 (14%)

Query: 1   MYLGFGFDDLHATYKVVAVIR---DCKTQ-----TMETKVHCMGDSCWRTILNEPG---- 48
           ++ G G+D +   YKVV +++   D + +       E KV  +  + W+ I +       
Sbjct: 138 VFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQL 197

Query: 49  -----FPLVLKQVNGQVVSGCVNWLGLDKLNCRNGEWGAADVTLQQLVVVSFDLREEEFR 103
                + L+ ++  G +    ++W+    L  R G        +   ++V FDL  EEF 
Sbjct: 198 LFYFYYHLLYRRGYGVLAGNSLHWV----LPRRPG-------LIAFNLIVRFDLALEEFE 246

Query: 104 LLSLPEGVSCEVPHDESNLGVLRNCLCLFHDHKRTHFVVWQMREYGVRESWTRLVSVSYE 163
           ++  PE V+      + ++GVL  CLCL  ++ +++  VW M+EY VR+SWT++ +V  +
Sbjct: 247 IVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQ-K 305

Query: 164 HLRCDGFPSLRPLMSLSEDGGDILL 188
                 F  +RPL+  S+D   +LL
Sbjct: 306 PKSVKSFSYMRPLV-YSKDKKKVLL 329


>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
           domains-containing protein | chr4:7441815-7443157
           FORWARD LENGTH=413
          Length = 413

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 30/205 (14%)

Query: 1   MYLGFGFDDLHATYKVVAVIR---DCKTQ-----TMETKVHCMGDSCWRTILNEPG---- 48
           ++ G G+D +   YKVV +++   D + +       E KV  +  + W+ I +       
Sbjct: 138 VFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQL 197

Query: 49  -----FPLVLKQVNGQVVSGCVNWLGLDKLNCRNGEWGAADVTLQQLVVVSFDLREEEFR 103
                + L+ ++  G +    ++W+    L  R G        +   ++V FDL  EEF 
Sbjct: 198 LFYFYYHLLYRRGYGVLAGNSLHWV----LPRRPG-------LIAFNLIVRFDLALEEFE 246

Query: 104 LLSLPEGVSCEVPHDESNLGVLRNCLCLFHDHKRTHFVVWQMREYGVRESWTRLVSVSYE 163
           ++  PE V+      + ++GVL  CLCL  ++ +++  VW M+EY VR+SWT++ +V  +
Sbjct: 247 IVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQ-K 305

Query: 164 HLRCDGFPSLRPLMSLSEDGGDILL 188
                 F  +RPL+  S+D   +LL
Sbjct: 306 PKSVKSFSYMRPLV-YSKDKKKVLL 329


>AT3G23880.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:8622061-8623155
           REVERSE LENGTH=364
          Length = 364

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 17/158 (10%)

Query: 4   GFGFDDLHATYKVVAVIRDCKTQTMETKVHCMGDSCWRTILNEP-GFPLVLKQVNGQVVS 62
           GFG+D+    YKVVA+++      +ETK++      WR+  + P G  +  K  +G  ++
Sbjct: 160 GFGYDESEDDYKVVALLQQRHQVKIETKIYSTRQKLWRSNTSFPSGVVVADKSRSGIYIN 219

Query: 63  GCVNWLGLDKLNCRNGEWGAADVTLQQLVVVSFDLREEEFRLLSLPEGVSCEVPHDESNL 122
           G +N               AA  +     ++S+D+  +EF+   LP  V C        L
Sbjct: 220 GTLN--------------WAATSSSSSWTIISYDMSRDEFK--ELPGPVCCGRGCFTMTL 263

Query: 123 GVLRNCLCLFHDHKRTHFVVWQMREYGVRESWTRLVSV 160
           G LR CL +    K  +  VW M+E+G   SW++L+S+
Sbjct: 264 GDLRGCLSMVCYCKGANADVWVMKEFGEVYSWSKLLSI 301


>AT4G22390.1 | Symbols:  | F-box associated ubiquitination effector
           family protein | chr4:11813757-11815074 REVERSE
           LENGTH=402
          Length = 402

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 114/252 (45%), Gaps = 40/252 (15%)

Query: 1   MYLGFGFDDLHATYKVVAVIRDCKTQ--------TMETKVHCMGDSCWRTILNEPGFP-- 50
           ++ G G+D +   +KVV +++ CK +         +E KV  +  + W+ +     F   
Sbjct: 138 VFYGLGYDSVGDDFKVVRIVQ-CKLKEGKKKFPCPVEVKVFSLKKNSWKRVCLMFEFQIL 196

Query: 51  -------LVLKQVNGQVVSGCVNWLGLDKLNCRNGEWGAADVTLQQLVVVSFDLREEEFR 103
                  L+ ++  G VV+  ++W+    L  R G        +    ++ +DL  ++  
Sbjct: 197 WISYYYHLLPRRGYGVVVNNHLHWI----LPRRQG-------VIAFNAIIKYDLASDDIG 245

Query: 104 LLSLPEGVSCEVPHDESNLGVLRNCLCLFHDHKRTHFVVWQMREYGVRESWTRLVSVSYE 163
           +LS P+ +  E   D  ++GVL  C+CL    + +H  VW ++EY   +SWT+L  V   
Sbjct: 246 VLSFPQELYIE---DNMDIGVLDGCVCLMCYDEYSHVDVWVLKEYEDYKSWTKLYRVPKP 302

Query: 164 HLRCDGFPSLRPLMSLSEDGGDILLLVTYQDMEAVTIM-YNLKDNSVKCIQLPNNKPFLN 222
               +    +RPL+  S+D   ILL +      A  +M ++L+  S+    +  +  F  
Sbjct: 303 E-SVESVEFIRPLIC-SKDRSKILLEIN----NAANLMWFDLESQSLTTAGIECDSSFTA 356

Query: 223 DNGYVESLISPC 234
           D   V SL+  C
Sbjct: 357 DI-LVSSLVLGC 367