Miyakogusa Predicted Gene

Lj3g3v3612570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3612570.1 Non Chatacterized Hit- tr|F6GW60|F6GW60_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,30.69,6e-18,DUF3411,Protein of unknown function DUF3411; seg,NULL;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NU,CUFF.46024.1
         (266 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12470.1 | Symbols:  | Protein of unknown function (DUF3411) ...   326   1e-89
AT2G40400.2 | Symbols:  | Protein of unknown function (DUF399 an...   131   6e-31
AT2G40400.1 | Symbols:  | Protein of unknown function (DUF399 an...   131   6e-31
AT3G56140.1 | Symbols:  | Protein of unknown function (DUF399 an...   130   9e-31
AT5G22790.1 | Symbols: RER1 | reticulata-related 1 | chr5:759939...    87   8e-18
AT2G37860.3 | Symbols: LCD1 | Protein of unknown function (DUF34...    79   2e-15
AT2G37860.1 | Symbols: LCD1 | Protein of unknown function (DUF34...    77   2e-14
AT2G37860.2 | Symbols: LCD1 | Protein of unknown function (DUF34...    77   2e-14
AT3G08640.1 | Symbols:  | Protein of unknown function (DUF3411) ...    67   1e-11
AT3G08630.1 | Symbols:  | Protein of unknown function (DUF3411) ...    65   4e-11

>AT5G12470.1 | Symbols:  | Protein of unknown function (DUF3411) |
           chr5:4044950-4047290 REVERSE LENGTH=386
          Length = 386

 Score =  326 bits (835), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 150/204 (73%), Positives = 182/204 (89%)

Query: 63  KRDAIMVLAEAGRSLESVPSDLAAAIKEGKIPASVVSRFLELEKSPLFRWLLQFTGFKER 122
           + +A+++L E+G  LES+P DLAAAI+ G+IP SV++RFLEL+KS + RWL+QF GF+ER
Sbjct: 102 RNEAMLLLKESGIELESLPKDLAAAIEAGRIPGSVITRFLELQKSAVMRWLMQFGGFRER 161

Query: 123 LLADDLFLAKIGMECGVGVFTKTAAEYDRRRENFFKEIEIVFADVVMAILADFMLVYLPA 182
           LLADDLF+AK+ MECGVG+FTKTAAEY+RRRENFF E+E+VFADV MAI+ADFMLVYLPA
Sbjct: 162 LLADDLFMAKLAMECGVGIFTKTAAEYERRRENFFNELEVVFADVAMAIIADFMLVYLPA 221

Query: 183 PTVSLRAPLAINAGHIAKFFHNCPDNAFQVALSGTSYSILQRIGAIARNGTKLFAVGTAS 242
           PTVSLR PLA+ AG I+KFFHNCPDNAFQVALSGTSY++LQR+GAI RNG KLFAVGT S
Sbjct: 222 PTVSLRPPLALTAGGISKFFHNCPDNAFQVALSGTSYTLLQRLGAITRNGAKLFAVGTTS 281

Query: 243 SLVGTAMTNALINAKKAVGKDSDG 266
           SLVGTA+TNA I A+KAV ++S+G
Sbjct: 282 SLVGTAITNAFIKARKAVDQNSEG 305


>AT2G40400.2 | Symbols:  | Protein of unknown function (DUF399 and
           DUF3411) | chr2:16869363-16872569 FORWARD LENGTH=735
          Length = 735

 Score =  131 bits (329), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 112/198 (56%), Gaps = 10/198 (5%)

Query: 69  VLAEAGRSLESVPSDLAAAIKEGKIPASVVSRFLELEKSPLFRWLLQ-FTGFKERLLADD 127
           V+  AGR  +++P D+   +  G +   ++  F +LE+ PL   L Q F GF+ERLLAD 
Sbjct: 417 VMNAAGRRRDALPQDIQKGLDLGLVSPEILQNFFDLEQYPLISELTQRFQGFRERLLADP 476

Query: 128 LFLAKIGMECGVGVFTKTAAEYDRRRENFFKEIEIVFADVVMAILADFMLVYLPAPTVSL 187
            FL ++ +E  + + T   A+Y++R+ENFF+E++ V  D V A + DF  V+LPAPT+S 
Sbjct: 477 KFLNRLAIEEAISITTTLVAQYEKRKENFFEELDYVITDSVRASVVDFFTVWLPAPTLSF 536

Query: 188 RA-------PLAINAGHIAKFFHNCPDNAFQVALSGTSYSILQRIGAIARNGTKLFAVGT 240
            +       P +I+A  +     + PDNAFQ +L G  +++  RI ++   G KL  VG 
Sbjct: 537 ISYADETIGPNSIDA--LRGLLGSIPDNAFQKSLGGQEWTLSLRIASVIIGGLKLAGVGV 594

Query: 241 ASSLVGTAMTNALINAKK 258
            SS      +NAL   +K
Sbjct: 595 VSSFAAVGSSNALYAIRK 612


>AT2G40400.1 | Symbols:  | Protein of unknown function (DUF399 and
           DUF3411) | chr2:16869363-16872569 FORWARD LENGTH=735
          Length = 735

 Score =  131 bits (329), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 112/198 (56%), Gaps = 10/198 (5%)

Query: 69  VLAEAGRSLESVPSDLAAAIKEGKIPASVVSRFLELEKSPLFRWLLQ-FTGFKERLLADD 127
           V+  AGR  +++P D+   +  G +   ++  F +LE+ PL   L Q F GF+ERLLAD 
Sbjct: 417 VMNAAGRRRDALPQDIQKGLDLGLVSPEILQNFFDLEQYPLISELTQRFQGFRERLLADP 476

Query: 128 LFLAKIGMECGVGVFTKTAAEYDRRRENFFKEIEIVFADVVMAILADFMLVYLPAPTVSL 187
            FL ++ +E  + + T   A+Y++R+ENFF+E++ V  D V A + DF  V+LPAPT+S 
Sbjct: 477 KFLNRLAIEEAISITTTLVAQYEKRKENFFEELDYVITDSVRASVVDFFTVWLPAPTLSF 536

Query: 188 RA-------PLAINAGHIAKFFHNCPDNAFQVALSGTSYSILQRIGAIARNGTKLFAVGT 240
            +       P +I+A  +     + PDNAFQ +L G  +++  RI ++   G KL  VG 
Sbjct: 537 ISYADETIGPNSIDA--LRGLLGSIPDNAFQKSLGGQEWTLSLRIASVIIGGLKLAGVGV 594

Query: 241 ASSLVGTAMTNALINAKK 258
            SS      +NAL   +K
Sbjct: 595 VSSFAAVGSSNALYAIRK 612


>AT3G56140.1 | Symbols:  | Protein of unknown function (DUF399 and
           DUF3411) | chr3:20829407-20832669 FORWARD LENGTH=745
          Length = 745

 Score =  130 bits (327), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 73/200 (36%), Positives = 112/200 (56%), Gaps = 10/200 (5%)

Query: 69  VLAEAGRSLESVPSDLAAAIKEGKIPASVVSRFLELEKSPLFRWLLQ-FTGFKERLLADD 127
           V+  AGR  +++P D+   +  G +   V+    +LE+ PL   L Q F GF+ERLLAD 
Sbjct: 426 VMNAAGRRRDALPPDIQNGLDLGLVSPEVLQNLFDLEQYPLISELTQRFQGFRERLLADP 485

Query: 128 LFLAKIGMECGVGVFTKTAAEYDRRRENFFKEIEIVFADVVMAILADFMLVYLPAPTVSL 187
            FL ++ +E  + + T   A+Y++R+ENFF+EI+ V  D V   + DF  V+LPAPT+S 
Sbjct: 486 KFLNRLAIEEAISITTTLIAQYEKRKENFFEEIDYVITDTVRGSVVDFFTVWLPAPTLSF 545

Query: 188 -------RAPLAINAGHIAKFFHNCPDNAFQVALSGTSYSILQRIGAIARNGTKLFAVGT 240
                    P +I+A  +     + PDNAFQ +L+G  +++  RI ++   G KL  VG 
Sbjct: 546 LSYADETTGPDSIDA--LRGLLGSIPDNAFQKSLAGREWNLNLRIASVIVGGLKLAGVGV 603

Query: 241 ASSLVGTAMTNALINAKKAV 260
            SS      +NAL  A+K +
Sbjct: 604 VSSFAAVGASNALNIARKVI 623


>AT5G22790.1 | Symbols: RER1 | reticulata-related 1 |
           chr5:7599395-7601573 REVERSE LENGTH=433
          Length = 433

 Score = 87.4 bits (215), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 95/202 (47%), Gaps = 5/202 (2%)

Query: 69  VLAEAGRSLESVPSDLAAAIKEGKIPASVVSRFLELEKS--PLFRWLLQFTGFKERLLAD 126
           V+ E  R   ++P D+  A K   I    + R+L+L+ S  PL   +      + R+LAD
Sbjct: 154 VMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRSCAMLRNRMLAD 213

Query: 127 DLFLAKIGMECGVGVFTKTAAEYDRRRENFFKEIEIVFADVVMAILADFMLVYLPAPTVS 186
             FL K+G E  +     T AE  +R E+F+ E E+  AD+++ ++ D  LV L AP   
Sbjct: 214 PSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYAR 273

Query: 187 LRAPLAINAGHIAKFFHNC---PDNAFQVALSGTSYSILQRIGAIARNGTKLFAVGTASS 243
           +  P   + G        C   P + F+    G  +S+ QRI      G    +VG    
Sbjct: 274 IGKPSVASTGLFKDLKRACASLPSSVFEAERPGCKFSVNQRIATFFYKGLLYGSVGFGCG 333

Query: 244 LVGTAMTNALINAKKAVGKDSD 265
           L+G  + N ++ AK++V K  +
Sbjct: 334 LIGQGIANLIMTAKRSVKKSEE 355


>AT2G37860.3 | Symbols: LCD1 | Protein of unknown function (DUF3411)
           | chr2:15856952-15858793 FORWARD LENGTH=432
          Length = 432

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 4/191 (2%)

Query: 79  SVPSDLAAAIKEGKIPASVVSRFLELEKSP--LFRWLLQFTGFKERLLADDLFLAKIGME 136
           ++PSD+  A K   I   ++ R+L+L+ S   L   +  +   + R+LAD  FL KIG E
Sbjct: 164 TLPSDMLEAAKNYGIRKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAE 223

Query: 137 CGVGVFTKTAAEYDRRRENFFKEIEIVFADVVMAILADFMLVYLPAPTVSLRAPLAINA- 195
             +     T AE  +R ++F+ E E+  AD+++  + +  LV + AP V    P A    
Sbjct: 224 IVIDSCCATVAEVQKRGKDFWAEFELYVADLLVGTVVNIALVGMLAPYVRFGQPSASPGF 283

Query: 196 -GHIAKFFHNCPDNAFQVALSGTSYSILQRIGAIARNGTKLFAVGTASSLVGTAMTNALI 254
            G +   ++  P + F+    G  +S  QR+      G    AVG    +VG  + N ++
Sbjct: 284 LGRMVFAYNALPSSVFEAERPGCRFSAQQRLATYFYKGIMYGAVGFGCGIVGQGIANLIM 343

Query: 255 NAKKAVGKDSD 265
            AK+ + K  +
Sbjct: 344 TAKRNINKSEE 354


>AT2G37860.1 | Symbols: LCD1 | Protein of unknown function (DUF3411)
           | chr2:15856952-15858351 FORWARD LENGTH=347
          Length = 347

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 4/184 (2%)

Query: 79  SVPSDLAAAIKEGKIPASVVSRFLELEKSP--LFRWLLQFTGFKERLLADDLFLAKIGME 136
           ++PSD+  A K   I   ++ R+L+L+ S   L   +  +   + R+LAD  FL KIG E
Sbjct: 164 TLPSDMLEAAKNYGIRKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAE 223

Query: 137 CGVGVFTKTAAEYDRRRENFFKEIEIVFADVVMAILADFMLVYLPAPTVSLRAPLAINA- 195
             +     T AE  +R ++F+ E E+  AD+++  + +  LV + AP V    P A    
Sbjct: 224 IVIDSCCATVAEVQKRGKDFWAEFELYVADLLVGTVVNIALVGMLAPYVRFGQPSASPGF 283

Query: 196 -GHIAKFFHNCPDNAFQVALSGTSYSILQRIGAIARNGTKLFAVGTASSLVGTAMTNALI 254
            G +   ++  P + F+    G  +S  QR+      G    AVG    +VG  + N ++
Sbjct: 284 LGRMVFAYNALPSSVFEAERPGCRFSAQQRLATYFYKGIMYGAVGFGCGIVGQGIANLIM 343

Query: 255 NAKK 258
            AK+
Sbjct: 344 TAKR 347


>AT2G37860.2 | Symbols: LCD1 | Protein of unknown function (DUF3411)
           | chr2:15856952-15858351 FORWARD LENGTH=347
          Length = 347

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 4/184 (2%)

Query: 79  SVPSDLAAAIKEGKIPASVVSRFLELEKSP--LFRWLLQFTGFKERLLADDLFLAKIGME 136
           ++PSD+  A K   I   ++ R+L+L+ S   L   +  +   + R+LAD  FL KIG E
Sbjct: 164 TLPSDMLEAAKNYGIRKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAE 223

Query: 137 CGVGVFTKTAAEYDRRRENFFKEIEIVFADVVMAILADFMLVYLPAPTVSLRAPLAINA- 195
             +     T AE  +R ++F+ E E+  AD+++  + +  LV + AP V    P A    
Sbjct: 224 IVIDSCCATVAEVQKRGKDFWAEFELYVADLLVGTVVNIALVGMLAPYVRFGQPSASPGF 283

Query: 196 -GHIAKFFHNCPDNAFQVALSGTSYSILQRIGAIARNGTKLFAVGTASSLVGTAMTNALI 254
            G +   ++  P + F+    G  +S  QR+      G    AVG    +VG  + N ++
Sbjct: 284 LGRMVFAYNALPSSVFEAERPGCRFSAQQRLATYFYKGIMYGAVGFGCGIVGQGIANLIM 343

Query: 255 NAKK 258
            AK+
Sbjct: 344 TAKR 347


>AT3G08640.1 | Symbols:  | Protein of unknown function (DUF3411) |
           chr3:2622992-2624005 FORWARD LENGTH=337
          Length = 337

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 7/154 (4%)

Query: 105 EKSPLFRWLLQFTGFKERLLADDLFLAKIGMECGVGVFTKTAAEYDRRRENFFKEIEIVF 164
           E SP     L   G++ R+ AD  F  K+ ME  VG+      +   R      E++ VF
Sbjct: 94  ESSPWGPIGLFIQGWRSRVAADPQFPFKVLMEEIVGLSACVLGDMASRPNFGLNELDFVF 153

Query: 165 ADVVMAILADFMLVYLPAPTVSLRAPLAINAGHIAKFFHNCPDNAFQVALSGTSYSILQR 224
           + +V+  + +F+L+Y+ APT +       ++  +   F NCP +         S++++ R
Sbjct: 154 STLVVGSILNFVLMYMLAPTAATLG----SSQTLPGIFRNCPSSHM---FEQGSFTVMNR 206

Query: 225 IGAIARNGTKLFAVGTASSLVGTAMTNALINAKK 258
            G +   G    +VG A+ LVGTA++N LI  +K
Sbjct: 207 FGTLVYKGMVFASVGLAAGLVGTAISNGLIMLRK 240


>AT3G08630.1 | Symbols:  | Protein of unknown function (DUF3411) |
           chr3:2620943-2621962 FORWARD LENGTH=339
          Length = 339

 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 13/146 (8%)

Query: 118 GFKERLLADDLFLAKIGMECGVGVFTKTAAEYDRRRENFFKEIEIVFADVVMAILADFML 177
           G++ R+ AD  F  K+ ME  VGV      +   R      E++ VF+ +V+  + +F L
Sbjct: 104 GWRSRVAADSQFPFKVLMEMLVGVSANVLGDMASRPNFGLNELDFVFSTLVVGSILNFTL 163

Query: 178 VYLPAPTVSLRAPLAINAGH---IAKFFHNCPDNAFQVALSGTSYSILQRIGAIARNGTK 234
           +YL AP+       AI+ G    +   F +CP +         +++++ R G +   G  
Sbjct: 164 MYLLAPS-------AISHGSSNLLPGIFRSCPSSHM---FEQGNFTLMNRFGTLVYKGMV 213

Query: 235 LFAVGTASSLVGTAMTNALINAKKAV 260
              VG A+ LVGTA++N LI  +K +
Sbjct: 214 FATVGLAAGLVGTAISNGLIMLRKKI 239