Miyakogusa Predicted Gene

Lj3g3v3599500.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3599500.1 Non Chatacterized Hit- tr|D7KN82|D7KN82_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,37.91,1e-18,seg,NULL,CUFF.46038.1
         (319 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13410.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   253   2e-67
AT1G55546.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    92   4e-19

>AT3G13410.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endoplasmic
           reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED
           DURING: 15 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT1G55546.1);
           Has 49 Blast hits to 49 proteins in 14 species: Archae -
           0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48;
           Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
           | chr3:4362149-4364032 REVERSE LENGTH=321
          Length = 321

 Score =  253 bits (645), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 137/297 (46%), Positives = 185/297 (62%), Gaps = 7/297 (2%)

Query: 25  TVPAFLWSSHYNLVSDNG-LKESVNYQVISPKDLAKSVSSEAGWSNFLCKGNKFQEPLDL 83
           TVPAFLWS H  L S NG L E+VNYQV+S KDL  SV ++ GWSNFLC   K ++P+D+
Sbjct: 30  TVPAFLWSPH--LQSANGELDEAVNYQVMSAKDLVGSVFTQGGWSNFLCSEKKLEQPVDV 87

Query: 84  ALLFIGGELQSSDLSVYEQADSVLLDLLEISFARSNTSMAFPYVSASEDVSLEDLLVSGF 143
           AL+FIG EL SSD+S    +D  L++ L   F  SN S+AFPY++A E+  +E+LL+SG 
Sbjct: 88  ALVFIGRELLSSDVSSKRNSDPALVNTLNNLFTASNFSLAFPYIAAPEEERMENLLLSGL 147

Query: 144 TEACGDDLGIGNIASLGSCSRDNTNHEQTGALHSVQDYLTKRKEESHSGKTDLVMFCNGH 203
            EAC +++G+ NI    SC  ++   ++   L S +D+L  R+E    G+TDLV+ C+  
Sbjct: 148 KEACPNNVGVSNIVFSDSCFVEDGTIQKLSDLQSFKDHLLARRETRKEGETDLVVLCSEG 207

Query: 204 SQALKNVDRTQSEGEVLSELIRSVEESGAKYAVLYVSDPSRSIKYPSYRELQRFLAESTN 263
           S++     ++ SE E   EL+ SVE+SG+KY  LYVSDP     Y SY+ LQRFLAE+  
Sbjct: 208 SESNSQAGQSHSERESFLELVSSVEQSGSKYTALYVSDP---YWYTSYKTLQRFLAETAK 264

Query: 264 GNESSN-ATICNPVCQLASXXXXXXXXXXXXXXXXXXXXCCMMGIDTPTRFETPQES 319
           GN +   AT C+ +C+  S                    CCM GIDTPTRFETPQ+S
Sbjct: 265 GNSTPEIATGCDELCKFKSSLLEGILVGIVFLLILISGLCCMAGIDTPTRFETPQDS 321


>AT1G55546.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; BEST Arabidopsis thaliana protein match is:
           unknown protein (TAIR:AT3G13410.1); Has 30201 Blast hits
           to 17322 proteins in 780 species: Archae - 12; Bacteria
           - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr1:20743828-20745109 FORWARD LENGTH=131
          Length = 131

 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 63/89 (70%), Gaps = 3/89 (3%)

Query: 24  STVPAFLWSSHYNLVSDNGLKESVNYQVISPKDLAKSVSSEAGWSNFLCKGNKFQEPLDL 83
           STVPAFLWS H  L   NG +  VNYQV+S KDL  SV +  GWSNFLC   K Q+P+D+
Sbjct: 44  STVPAFLWSPH--LQYANG-ETDVNYQVMSAKDLVDSVFTLGGWSNFLCSEKKLQQPVDV 100

Query: 84  ALLFIGGELQSSDLSVYEQADSVLLDLLE 112
           AL+FIG EL SSD+S  + +D VL++ L+
Sbjct: 101 ALVFIGRELLSSDVSSNQNSDPVLVNTLK 129